Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86795 * 120.00157 * 2 1 4 4 H 1.48506 * 109.47252 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47506 * 119.99738 * 3 2 1 6 6 H 1.48496 * 109.47499 * 240.00171 * 3 2 1 7 7 C 1.39839 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99811 * 4.03741 * 7 2 1 9 9 C 1.41237 * 120.00123 * 184.03562 * 7 2 1 10 10 C 1.41814 * 126.06358 * 185.81662 * 9 7 2 11 11 C 1.35222 * 107.84941 * 179.82443 * 10 9 7 12 12 O 1.35718 * 125.98000 * 180.15246 * 11 10 9 13 13 N 1.36624 * 108.03978 * 0.42882 * 11 10 9 14 14 C 1.39833 * 125.92051 * 179.76108 * 13 11 10 15 15 C 1.38976 * 120.04785 * 324.70739 * 14 13 11 16 16 C 1.38056 * 119.94084 * 179.69587 * 15 14 13 17 17 C 1.38526 * 120.05379 * 0.60318 * 16 15 14 18 18 F 1.35098 * 119.94815 * 179.69922 * 17 16 15 19 19 C 1.38529 * 120.10684 * 359.67216 * 17 16 15 20 20 C 1.38053 * 120.05086 * 0.02904 * 19 17 16 21 21 N 1.33011 * 126.05914 * 6.11847 * 9 7 2 22 22 H 0.96991 * 119.99718 * 174.84077 * 1 2 3 23 23 H 1.07997 * 126.07363 * 359.97438 * 10 9 7 24 24 H 0.96698 * 114.00238 * 270.32316 * 12 11 10 25 25 H 1.08001 * 120.03047 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.97158 * 180.27701 * 16 15 14 27 27 H 1.08006 * 119.97425 * 179.97438 * 19 17 16 28 28 H 1.07998 * 120.02371 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 1.2781 2.7465 0.0006 5 1 3.0969 1.6964 1.2125 6 1 3.0968 1.6964 -1.2125 7 6 2.0083 -1.2110 0.0005 8 1 1.4703 -2.1452 -0.0649 9 6 3.4180 -1.2126 0.0866 10 6 4.2596 -2.3492 -0.0180 11 6 5.5388 -1.9313 0.1137 12 8 6.6435 -2.7186 0.0689 13 7 5.5244 -0.5787 0.3060 14 6 6.6461 0.2357 0.4902 15 6 7.7461 -0.2432 1.1918 16 6 8.8548 0.5606 1.3670 17 6 8.8665 1.8476 0.8549 18 9 9.9502 2.6344 1.0328 19 6 7.7690 2.3291 0.1601 20 6 6.6604 1.5270 -0.0229 21 7 4.1914 -0.1489 0.2858 22 1 -0.4849 -0.8366 -0.0755 23 1 3.9363 -3.3673 -0.1773 24 1 6.9102 -3.0714 0.9288 25 1 7.7353 -1.2447 1.5957 26 1 9.7116 0.1874 1.9082 27 1 7.7803 3.3331 -0.2378 28 1 5.8052 1.9027 -0.5650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259836271.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = 4.544791 kcal Electronic energy + Delta-G solvation = -17173.884328 eV Core-core repulsion = 14105.963564 eV Total energy + Delta-G solvation = -3067.920764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.75591 -40.43226 -38.39902 -36.71204 -33.85795 -32.27391 -31.09379 -28.83174 -28.02855 -25.54159 -23.05739 -22.27226 -20.69233 -19.56075 -18.49868 -17.73226 -17.39905 -16.32525 -15.81219 -15.47370 -14.81252 -14.41637 -13.77030 -13.58086 -13.49600 -13.38986 -13.07458 -12.82304 -12.38081 -12.14110 -11.97104 -11.18658 -10.93564 -10.79309 -10.38775 -9.67058 -9.49630 -9.07234 -8.97861 -8.50440 -8.02818 -7.48979 -7.24283 -4.74860 1.08416 1.30555 2.57003 3.02502 3.38684 3.57964 3.76415 3.95971 3.99082 4.33633 4.36645 4.48788 4.84158 4.89303 5.24614 5.28039 5.39499 5.77581 5.88404 6.08791 6.16189 6.29930 6.46810 6.54754 6.66887 6.86186 7.04967 7.37231 7.56356 8.04386 8.25523 8.36893 8.69746 9.09297 10.11131 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.027287 B = 0.007580 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.900380 B = 3693.000294 C = 4629.285616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.052 3.948 3 Si 1.099 2.901 4 H -0.306 1.306 5 H -0.260 1.260 6 H -0.279 1.279 7 C -0.480 4.480 8 H 0.084 0.916 9 C 0.218 3.782 10 C -0.273 4.273 11 C 0.242 3.758 12 O -0.474 6.474 13 N -0.366 5.366 14 C 0.192 3.808 15 C -0.124 4.124 16 C -0.126 4.126 17 C 0.061 3.939 18 F -0.146 7.146 19 C -0.127 4.127 20 C -0.104 4.104 21 N -0.407 5.407 22 H 0.283 0.717 23 H 0.138 0.862 24 H 0.383 0.617 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.367 0.202 2.212 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.169 4.169 3 Si 0.929 3.071 4 H -0.235 1.235 5 H -0.186 1.186 6 H -0.206 1.206 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.071 3.929 10 C -0.304 4.304 11 C 0.082 3.918 12 O -0.277 6.277 13 N -0.150 5.150 14 C 0.096 3.904 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.041 3.959 18 F -0.125 7.125 19 C -0.146 4.146 20 C -0.125 4.125 21 N -0.243 5.243 22 H 0.094 0.906 23 H 0.155 0.845 24 H 0.238 0.762 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.280 2.990 1.844 13.737 hybrid contribution 0.408 -2.876 0.325 2.923 sum 13.688 0.114 2.169 13.860 Atomic orbital electron populations 1.70665 1.07777 1.32603 1.33560 1.27289 0.95549 1.04939 0.89108 0.82908 0.72622 0.71370 0.80225 1.23547 1.18649 1.20562 1.19901 0.88257 0.96441 1.47437 0.89787 1.19544 0.94354 0.88731 0.90263 1.21304 0.90299 1.00362 1.18396 1.18868 0.86823 0.81880 1.04219 1.84870 1.44289 1.63901 1.34611 1.46248 1.05173 1.03358 1.60214 1.17491 0.85748 0.91256 0.95917 1.20678 0.93147 1.00719 1.00024 1.20801 0.99230 0.92605 1.01917 1.17580 0.84949 0.89902 1.03488 1.91458 1.53018 1.73933 1.94045 1.20973 0.92373 1.00961 1.00317 1.20931 0.98557 0.93094 0.99868 1.77695 0.82201 1.19626 1.44775 0.90608 0.84467 0.76176 0.85401 0.84614 0.84448 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.43 13.66 55.54 0.76 -21.67 15 2 C 0.05 1.40 5.51 -17.35 -0.10 1.30 15 3 Si 1.10 26.90 25.88 -169.99 -4.40 22.50 15 4 H -0.31 -7.30 7.11 56.52 0.40 -6.89 15 5 H -0.26 -6.42 6.75 56.52 0.38 -6.04 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.48 -12.98 9.82 -37.84 -0.37 -13.35 15 8 H 0.08 2.25 8.05 -52.49 -0.42 1.83 15 9 C 0.22 5.62 6.50 -84.85 -0.55 5.07 15 10 C -0.27 -6.13 10.78 -39.29 -0.42 -6.56 15 11 C 0.24 4.95 7.66 -16.49 -0.13 4.82 15 12 O -0.47 -7.63 12.37 -18.86 -0.23 -7.86 15 13 N -0.37 -8.05 3.76 -10.72 -0.04 -8.09 15 14 C 0.19 3.60 6.39 -83.67 -0.53 3.07 15 15 C -0.12 -1.87 9.16 -39.38 -0.36 -2.23 15 16 C -0.13 -1.67 10.02 -39.54 -0.40 -2.06 15 17 C 0.06 0.86 7.30 -39.37 -0.29 0.57 15 18 F -0.15 -2.01 17.26 2.25 0.04 -1.97 15 19 C -0.13 -1.85 10.02 -39.54 -0.40 -2.24 15 20 C -0.10 -1.83 9.75 -39.38 -0.38 -2.21 15 21 N -0.41 -10.31 7.59 32.25 0.24 -10.06 15 22 H 0.28 7.39 8.72 -40.82 -0.36 7.03 15 23 H 0.14 2.77 8.06 -52.49 -0.42 2.35 15 24 H 0.38 4.07 8.38 45.56 0.38 4.45 15 25 H 0.13 1.64 6.49 -52.49 -0.34 1.30 15 26 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.14 1.65 8.06 -52.48 -0.42 1.22 15 28 H 0.14 2.61 8.06 -52.49 -0.42 2.19 15 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -30.14 258.29 -4.91 -35.05 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -1.24 Total: 2.03 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.93 Total: -13.82 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.96 Total: -39.83 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.23 Total: -7.86 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.40 Total: 22.50 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.14 -4.91 -35.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836271.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds