Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86795 * 120.00157 * 2 1 4 4 H 1.48506 * 109.47252 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47506 * 119.99738 * 3 2 1 6 6 H 1.48496 * 109.47499 * 240.00171 * 3 2 1 7 7 C 1.39839 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99811 * 4.03741 * 7 2 1 9 9 C 1.41237 * 120.00123 * 184.03562 * 7 2 1 10 10 C 1.41814 * 126.06358 * 185.81662 * 9 7 2 11 11 C 1.35222 * 107.84941 * 179.82443 * 10 9 7 12 12 O 1.35718 * 125.98000 * 180.15246 * 11 10 9 13 13 N 1.36624 * 108.03978 * 0.42882 * 11 10 9 14 14 C 1.39833 * 125.92051 * 179.76108 * 13 11 10 15 15 C 1.38976 * 120.04785 * 324.70739 * 14 13 11 16 16 C 1.38056 * 119.94084 * 179.69587 * 15 14 13 17 17 C 1.38526 * 120.05379 * 0.60318 * 16 15 14 18 18 F 1.35098 * 119.94815 * 179.69922 * 17 16 15 19 19 C 1.38529 * 120.10684 * 359.67216 * 17 16 15 20 20 C 1.38053 * 120.05086 * 0.02904 * 19 17 16 21 21 N 1.33011 * 126.05914 * 6.11847 * 9 7 2 22 22 H 0.96991 * 119.99718 * 174.84077 * 1 2 3 23 23 H 1.07997 * 126.07363 * 359.97438 * 10 9 7 24 24 H 0.96698 * 114.00238 * 270.32316 * 12 11 10 25 25 H 1.08001 * 120.03047 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.97158 * 180.27701 * 16 15 14 27 27 H 1.08006 * 119.97425 * 179.97438 * 19 17 16 28 28 H 1.07998 * 120.02371 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 1.2781 2.7465 0.0006 5 1 3.0969 1.6964 1.2125 6 1 3.0968 1.6964 -1.2125 7 6 2.0083 -1.2110 0.0005 8 1 1.4703 -2.1452 -0.0649 9 6 3.4180 -1.2126 0.0866 10 6 4.2596 -2.3492 -0.0180 11 6 5.5388 -1.9313 0.1137 12 8 6.6435 -2.7186 0.0689 13 7 5.5244 -0.5787 0.3060 14 6 6.6461 0.2357 0.4902 15 6 7.7461 -0.2432 1.1918 16 6 8.8548 0.5606 1.3670 17 6 8.8665 1.8476 0.8549 18 9 9.9502 2.6344 1.0328 19 6 7.7690 2.3291 0.1601 20 6 6.6604 1.5270 -0.0229 21 7 4.1914 -0.1489 0.2858 22 1 -0.4849 -0.8366 -0.0755 23 1 3.9363 -3.3673 -0.1773 24 1 6.9102 -3.0714 0.9288 25 1 7.7353 -1.2447 1.5957 26 1 9.7116 0.1874 1.9082 27 1 7.7803 3.3331 -0.2378 28 1 5.8052 1.9027 -0.5650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259836271.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = -16.297122 kcal Electronic energy + Delta-G solvation = -17174.788102 eV Core-core repulsion = 14105.963564 eV Total energy + Delta-G solvation = -3068.824537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.88863 -42.05687 -39.71568 -38.17878 -35.74285 -33.89860 -32.28635 -30.47032 -29.67706 -27.31531 -24.28735 -23.72309 -22.21722 -21.37877 -20.11699 -19.32415 -18.68737 -17.77505 -17.11021 -16.61925 -16.35114 -15.96142 -15.44656 -15.03856 -14.97835 -14.66747 -14.59077 -14.36163 -14.00475 -13.78346 -13.43130 -12.80428 -12.57936 -12.33604 -11.96281 -11.65870 -11.34660 -10.73222 -10.36889 -10.23766 -9.67898 -9.31560 -9.04650 -6.75924 -0.22373 0.13070 1.02550 1.30334 1.44692 1.66008 2.05053 2.06737 2.39579 2.50812 3.09111 3.20614 3.23402 3.65556 3.79589 4.04997 4.11943 4.46553 4.52535 4.82384 4.88563 4.92428 4.99651 5.04571 5.22537 5.34671 5.53335 5.69048 6.03172 6.12593 6.33486 6.68884 6.89462 7.22363 8.07160 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.027287 B = 0.007580 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.900380 B = 3693.000294 C = 4629.285616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.023 3.977 3 Si 1.135 2.865 4 H -0.298 1.298 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.070 0.930 9 C 0.203 3.797 10 C -0.310 4.310 11 C 0.273 3.727 12 O -0.463 6.463 13 N -0.368 5.368 14 C 0.144 3.856 15 C -0.111 4.111 16 C -0.113 4.113 17 C 0.072 3.928 18 F -0.139 7.139 19 C -0.123 4.123 20 C -0.120 4.120 21 N -0.424 5.424 22 H 0.280 0.720 23 H 0.151 0.849 24 H 0.414 0.586 25 H 0.154 0.846 26 H 0.176 0.824 27 H 0.161 0.839 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.201 0.382 3.048 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.193 4.193 3 Si 0.963 3.037 4 H -0.227 1.227 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.089 0.911 9 C 0.054 3.946 10 C -0.340 4.340 11 C 0.110 3.890 12 O -0.270 6.270 13 N -0.154 5.154 14 C 0.051 3.949 15 C -0.132 4.132 16 C -0.132 4.132 17 C 0.052 3.948 18 F -0.118 7.118 19 C -0.143 4.143 20 C -0.140 4.140 21 N -0.259 5.259 22 H 0.091 0.909 23 H 0.169 0.831 24 H 0.274 0.726 25 H 0.172 0.828 26 H 0.193 0.807 27 H 0.179 0.821 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.147 3.186 2.705 17.649 hybrid contribution -0.334 -2.897 0.117 2.918 sum 16.813 0.289 2.822 17.050 Atomic orbital electron populations 1.70683 1.08056 1.32480 1.36180 1.27968 0.95827 1.06637 0.88856 0.82420 0.71772 0.69932 0.79578 1.22727 1.19306 1.21003 1.19897 0.89388 0.95995 1.49727 0.91137 1.19624 0.94202 0.90336 0.90483 1.21380 0.90814 1.00363 1.21471 1.18680 0.87320 0.81726 1.01232 1.84816 1.42187 1.62948 1.37006 1.46351 1.04800 1.04420 1.59782 1.18005 0.86113 0.91880 0.98926 1.20956 0.91887 1.01961 0.98378 1.21194 0.99601 0.91679 1.00728 1.17730 0.84601 0.90267 1.02226 1.91491 1.52570 1.73861 1.93831 1.21141 0.91507 1.01665 0.99941 1.20904 0.99097 0.93416 1.00589 1.77489 0.84332 1.20450 1.43637 0.90892 0.83135 0.72605 0.82846 0.80659 0.82131 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.08 13.66 21.81 0.30 -47.78 15 2 C 0.02 1.28 5.51 85.22 0.47 1.75 15 3 Si 1.14 56.34 25.88 68.60 1.78 58.12 15 4 H -0.30 -14.14 7.11 99.48 0.71 -13.44 15 5 H -0.27 -13.29 6.75 99.48 0.67 -12.62 15 6 H -0.28 -13.99 7.11 99.48 0.71 -13.28 15 7 C -0.51 -28.80 9.82 23.39 0.23 -28.57 15 8 H 0.07 4.01 8.05 -2.91 -0.02 3.99 15 9 C 0.20 10.67 6.50 40.59 0.26 10.93 15 10 C -0.31 -13.88 10.78 22.46 0.24 -13.64 15 11 C 0.27 10.66 7.66 83.25 0.64 11.30 15 12 O -0.46 -13.10 12.37 -90.40 -1.12 -14.22 15 13 N -0.37 -15.73 3.76 -298.35 -1.12 -16.85 15 14 C 0.14 5.09 6.39 38.22 0.24 5.33 15 15 C -0.11 -2.85 9.16 22.40 0.21 -2.65 15 16 C -0.11 -2.38 10.02 22.30 0.22 -2.16 15 17 C 0.07 1.70 7.30 22.41 0.16 1.87 15 18 F -0.14 -3.17 17.26 44.97 0.78 -2.40 15 19 C -0.12 -3.22 10.02 22.30 0.22 -3.00 15 20 C -0.12 -4.03 9.75 22.40 0.22 -3.81 15 21 N -0.42 -21.61 7.59 -51.87 -0.39 -22.00 15 22 H 0.28 15.39 8.72 -92.72 -0.81 14.58 15 23 H 0.15 6.08 8.06 -2.91 -0.02 6.06 15 24 H 0.41 6.70 8.38 -74.06 -0.62 6.07 15 25 H 0.15 3.08 6.49 -2.91 -0.02 3.06 15 26 H 0.18 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.16 3.35 8.06 -2.91 -0.02 3.32 15 28 H 0.12 4.49 8.06 -2.91 -0.02 4.47 15 Total: -1.00 -67.03 258.29 3.86 -63.18 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.52 Total: 4.59 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.12 Total: -22.64 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.22 Total: -86.63 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.12 Total: -14.22 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 56.34 SS G_CDS: 1.78 Total: 58.12 kcal Total: -67.03 3.86 -63.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836271.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.879 kcal (2) G-P(sol) polarization free energy of solvation -67.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds