Wall clock time and date at job start Mon Mar 30 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35294 * 117.00282 * 2 1 4 4 N 1.32065 * 121.10802 * 0.02562 * 3 2 1 5 5 C 1.33972 * 121.23874 * 179.97438 * 4 3 2 6 6 C 1.41266 * 118.38098 * 180.02562 * 5 4 3 7 7 H 1.07994 * 119.99752 * 179.97438 * 6 5 4 8 8 C 1.40081 * 119.99784 * 359.97438 * 6 5 4 9 9 N 1.30688 * 120.00322 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00066 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46800 * 59.99986 * 10 8 6 12 12 H 1.48498 * 109.47152 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47120 * 300.00292 * 10 8 6 14 14 N 1.32863 * 123.23835 * 0.02562 * 5 4 3 15 15 C 1.33283 * 120.92774 * 0.02562 * 14 5 4 16 16 C 1.40837 * 122.02500 * 179.97438 * 15 14 5 17 17 F 1.35107 * 120.20094 * 0.02562 * 16 15 14 18 18 C 1.36536 * 119.59987 * 180.02562 * 16 15 14 19 19 C 1.39155 * 121.04983 * 359.97438 * 18 16 15 20 20 C 1.37734 * 120.85017 * 0.02562 * 19 18 16 21 21 C 1.39492 * 119.47235 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.47502 * 300.00373 * 1 2 3 23 23 H 1.09003 * 109.47197 * 60.00272 * 1 2 3 24 24 H 1.09005 * 109.47348 * 180.02562 * 1 2 3 25 25 H 0.96998 * 120.00253 * 180.02562 * 9 8 6 26 26 H 1.07994 * 119.47626 * 180.28090 * 18 16 15 27 27 H 1.08007 * 119.57294 * 179.97438 * 19 18 16 28 28 H 1.08002 * 120.26818 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3455 2.3268 0.0005 5 6 1.9511 3.5218 0.0010 6 6 1.1459 4.6826 0.0021 7 1 1.6067 5.6593 0.0030 8 6 -0.2501 4.5666 0.0021 9 7 -0.8076 3.3846 0.0015 10 14 -1.3148 6.1014 0.0042 11 1 -1.0218 6.9088 -1.2073 12 1 -2.7473 5.7101 0.0032 13 1 -1.0216 6.9056 1.2177 14 7 3.2715 3.6692 0.0006 15 6 4.0791 2.6088 -0.0010 16 6 5.4815 2.7382 -0.0020 17 9 6.0510 3.9633 -0.0010 18 6 6.2621 1.6179 -0.0041 19 6 5.6943 0.3475 -0.0047 20 6 4.3265 0.1852 -0.0037 21 6 3.5019 1.3102 -0.0015 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -1.7743 3.3043 0.0011 26 1 7.3372 1.7194 -0.0003 27 1 6.3344 -0.5224 -0.0068 28 1 3.8959 -0.8053 -0.0046 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:01 Heat of formation + Delta-G solvation = -40.331578 kcal Electronic energy + Delta-G solvation = -17496.911353 eV Core-core repulsion = 14427.044603 eV Total energy + Delta-G solvation = -3069.866750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.53870 -41.45556 -39.31381 -38.05742 -35.48491 -33.53113 -31.93438 -30.77478 -28.57328 -27.99516 -24.64015 -24.22974 -22.66737 -20.67722 -19.23458 -18.58107 -18.22225 -16.94167 -16.92993 -16.85769 -16.35116 -16.34959 -15.68760 -15.00700 -14.84090 -14.66069 -14.12934 -13.43015 -13.13773 -13.03335 -12.91569 -12.69292 -12.59615 -12.42214 -12.39930 -12.01736 -11.22418 -11.09211 -10.68444 -9.92890 -9.60253 -8.87311 -8.63781 -6.84508 -0.24604 0.22729 1.20453 1.37525 1.46683 1.50890 2.01033 2.14268 2.22164 2.79490 3.46333 3.73983 3.80879 3.82474 4.03177 4.11278 4.44824 4.49021 4.54364 4.58154 4.88330 4.92477 4.97835 5.20944 5.37751 5.40794 5.55970 5.86977 6.07914 6.18531 6.33012 6.46830 6.95527 8.02239 8.16902 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.008710 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.981941 B = 3214.030599 C = 4373.868130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.305 6.305 3 C 0.365 3.635 4 N -0.542 5.542 5 C 0.384 3.616 6 C -0.403 4.403 7 H 0.093 0.907 8 C 0.026 3.974 9 N -0.723 5.723 10 Si 1.004 2.996 11 H -0.260 1.260 12 H -0.254 1.254 13 H -0.260 1.260 14 N -0.668 5.668 15 C 0.173 3.827 16 C 0.010 3.990 17 F -0.152 7.152 18 C -0.080 4.080 19 C -0.174 4.174 20 C -0.033 4.033 21 C -0.253 4.253 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.132 0.868 25 H 0.292 0.708 26 H 0.165 0.835 27 H 0.172 0.828 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -7.123 -0.005 7.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.208 6.208 3 C 0.157 3.843 4 N -0.275 5.275 5 C 0.150 3.850 6 C -0.436 4.436 7 H 0.111 0.889 8 C -0.201 4.201 9 N -0.343 5.343 10 Si 0.822 3.178 11 H -0.184 1.184 12 H -0.178 1.178 13 H -0.184 1.184 14 N -0.396 5.396 15 C 0.038 3.962 16 C -0.012 4.012 17 F -0.131 7.131 18 C -0.100 4.100 19 C -0.193 4.193 20 C -0.053 4.053 21 C -0.262 4.262 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.150 0.850 25 H 0.104 0.896 26 H 0.182 0.818 27 H 0.190 0.810 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.429 -6.534 -0.003 6.548 hybrid contribution -0.211 0.462 0.000 0.508 sum 0.218 -6.072 -0.003 6.076 Atomic orbital electron populations 1.22931 0.75667 1.03668 1.02053 1.85981 1.24348 1.23627 1.86889 1.22047 0.88533 0.86570 0.87155 1.69070 1.38038 0.97480 1.22869 1.19904 0.86272 0.90320 0.88462 1.19878 0.91562 0.92519 1.39647 0.88940 1.27119 0.98917 1.01741 0.92276 1.70094 1.13201 1.26152 1.24864 0.84928 0.76504 0.76119 0.80207 1.18382 1.17771 1.18375 1.68885 1.04973 1.31576 1.34121 1.19136 0.93929 0.89295 0.93870 1.17294 0.88520 0.81072 1.14286 1.91360 1.84275 1.42581 1.94873 1.21121 1.01023 0.90686 0.97216 1.21029 0.94053 0.96838 1.07397 1.21248 0.93766 0.96958 0.93331 1.19319 0.90927 0.95526 1.20438 0.93588 0.93583 0.85035 0.89640 0.81782 0.81042 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.77 10.43 113.37 1.18 2.95 15 2 O -0.31 -12.39 10.01 -85.80 -0.86 -13.25 15 3 C 0.36 17.90 7.74 86.74 0.67 18.57 15 4 N -0.54 -29.72 6.72 -302.43 -2.03 -31.75 15 5 C 0.38 22.62 7.34 135.09 0.99 23.61 15 6 C -0.40 -22.35 9.33 23.46 0.22 -22.13 15 7 H 0.09 5.05 7.85 -2.91 -0.02 5.03 15 8 C 0.03 1.23 5.50 85.31 0.47 1.70 15 9 N -0.72 -34.86 11.34 21.84 0.25 -34.61 15 10 Si 1.00 35.76 29.56 68.60 2.03 37.79 15 11 H -0.26 -9.15 7.11 99.48 0.71 -8.45 15 12 H -0.25 -8.14 7.11 99.48 0.71 -7.44 15 13 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 14 N -0.67 -39.51 10.18 -187.82 -1.91 -41.42 15 15 C 0.17 9.04 6.64 40.52 0.27 9.31 15 16 C 0.01 0.45 7.33 22.51 0.16 0.61 15 17 F -0.15 -7.11 17.16 44.97 0.77 -6.34 15 18 C -0.08 -2.65 9.92 22.09 0.22 -2.43 15 19 C -0.17 -5.12 10.01 22.37 0.22 -4.90 15 20 C -0.03 -1.17 9.70 22.45 0.22 -0.95 15 21 C -0.25 -11.91 5.90 -19.93 -0.12 -12.02 15 22 H 0.05 1.73 8.13 -2.38 -0.02 1.71 15 23 H 0.05 1.73 8.13 -2.39 -0.02 1.71 15 24 H 0.13 3.14 8.14 -2.38 -0.02 3.12 15 25 H 0.29 12.28 8.29 -92.71 -0.77 11.51 15 26 H 0.16 4.07 8.06 -2.91 -0.02 4.05 15 27 H 0.17 3.34 8.06 -2.91 -0.02 3.31 15 28 H 0.15 4.40 7.81 -2.91 -0.02 4.38 15 Total: -1.00 -68.73 260.60 3.96 -64.77 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.20 Total: 10.48 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 4.51 Total: 14.32 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.70 Total: -107.78 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.86 Total: -13.25 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.77 Total: -6.34 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -68.73 3.96 -64.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.438 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds