Wall clock time and date at job start Mon Mar 30 2020 03:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47077 * 2 1 4 4 C 1.52999 * 109.47049 * 119.99449 * 2 1 3 5 5 H 1.09006 * 110.23911 * 305.70577 * 4 2 1 6 6 C 1.53625 * 110.35007 * 183.66487 * 4 2 1 7 7 H 1.08998 * 108.92509 * 4.09197 * 6 4 2 8 8 O 1.42893 * 108.93532 * 122.62420 * 6 4 2 9 9 C 1.52973 * 112.26411 * 243.36147 * 6 4 2 10 10 H 1.09000 * 109.65457 * 89.91292 * 9 6 4 11 11 C 1.50699 * 109.64863 * 210.22601 * 9 6 4 12 12 H 1.07999 * 120.00249 * 4.48940 * 11 9 6 13 13 C 1.37885 * 120.00072 * 184.48993 * 11 9 6 14 14 N 1.31519 * 119.99635 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 120.00124 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46883 * 90.00389 * 15 13 11 17 17 H 1.48503 * 109.47196 * 210.00138 * 15 13 11 18 18 H 1.48500 * 109.47488 * 330.00347 * 15 13 11 19 19 C 1.55093 * 108.67023 * 330.06596 * 9 6 4 20 20 S 1.83246 * 110.26967 * 67.69734 * 4 2 1 21 21 O 1.42105 * 109.61074 * 252.38749 * 20 4 2 22 22 O 1.42094 * 109.61008 * 26.33930 * 20 4 2 23 23 H 1.08994 * 109.47953 * 300.00034 * 1 2 3 24 24 H 1.09007 * 109.47134 * 60.00495 * 1 2 3 25 25 H 1.08999 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47953 * 239.99966 * 2 1 3 27 27 H 1.09004 * 109.46917 * 300.00238 * 3 2 1 28 28 H 1.09005 * 109.47213 * 59.99224 * 3 2 1 29 29 H 1.08992 * 109.47421 * 179.97438 * 3 2 1 30 30 H 0.96703 * 114.00020 * 294.54661 * 8 6 4 31 31 H 0.96997 * 119.99840 * 180.02562 * 14 13 11 32 32 H 1.09000 * 111.07860 * 283.90234 * 19 9 6 33 33 H 1.08994 * 111.08100 * 159.85664 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6029 -0.2790 2.1447 6 6 3.5732 -0.6537 1.3166 7 1 3.9367 -0.0416 0.4912 8 8 3.9567 -0.0397 2.5486 9 6 4.2186 -2.0379 1.2298 10 1 4.4131 -2.2869 0.1866 11 6 5.5145 -2.0419 1.9991 12 1 5.8114 -1.1689 2.5613 13 6 6.3210 -3.1602 1.9853 14 7 5.9596 -4.2231 1.3002 15 14 7.9275 -3.1649 2.9383 16 1 7.6842 -3.6627 4.3160 17 1 8.9046 -4.0517 2.2569 18 1 8.4709 -1.7843 2.9995 19 6 3.2454 -3.0787 1.8420 20 16 1.6365 -2.5064 1.1609 21 8 0.5954 -2.8062 2.0805 22 8 1.5258 -2.9036 -0.1989 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 3.6926 0.8874 2.6250 31 1 6.5267 -5.0099 1.2908 32 1 3.2506 -3.0274 2.9308 33 1 3.4809 -4.0857 1.4976 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260678911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:46 Heat of formation + Delta-G solvation = -131.490095 kcal Electronic energy + Delta-G solvation = -17558.826011 eV Core-core repulsion = 14711.617836 eV Total energy + Delta-G solvation = -2847.208174 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.29692 -36.33634 -35.54775 -35.04186 -33.72113 -31.33879 -27.89921 -27.29267 -25.79799 -23.56792 -20.64479 -19.58939 -18.20830 -17.43345 -16.59208 -15.70922 -15.45997 -15.07865 -14.69019 -14.29006 -13.79110 -13.45702 -12.98100 -12.72283 -12.57759 -12.27523 -12.14556 -11.57723 -11.47436 -11.36639 -11.17868 -11.13593 -10.96132 -10.87004 -10.71147 -10.34345 -10.23969 -9.86184 -9.60403 -9.22016 -8.86777 -8.47834 -6.16384 -4.18021 0.81496 3.22048 3.28279 3.33240 3.36761 4.21405 4.35107 4.38377 4.82165 4.93805 5.02610 5.11644 5.18140 5.35650 5.52773 5.62165 5.66139 5.74002 5.79313 5.93691 5.98155 6.13231 6.21686 6.25148 6.34064 6.51556 7.06989 7.32947 7.86470 8.03938 8.33055 8.91081 9.46914 10.93940 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.008783 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.421776 B = 3187.087632 C = 3698.250601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.585 4.585 5 H 0.138 0.862 6 C 0.129 3.871 7 H 0.067 0.933 8 O -0.535 6.535 9 C 0.048 3.952 10 H 0.066 0.934 11 C -0.489 4.489 12 H 0.081 0.919 13 C 0.057 3.943 14 N -0.892 5.892 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.513 4.513 20 S 2.335 3.665 21 O -0.967 6.967 22 O -0.947 6.947 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.354 0.646 31 H 0.264 0.736 32 H 0.121 0.879 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 8.778 -1.359 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.094 4.094 3 C -0.202 4.202 4 C -0.694 4.694 5 H 0.156 0.844 6 C 0.068 3.932 7 H 0.084 0.916 8 O -0.337 6.337 9 C 0.028 3.972 10 H 0.084 0.916 11 C -0.529 4.529 12 H 0.099 0.901 13 C -0.145 4.145 14 N -0.530 5.530 15 Si 0.729 3.271 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.649 4.649 20 S 2.525 3.475 21 O -0.964 6.964 22 O -0.944 6.944 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.199 0.801 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.912 7.499 -1.628 10.328 hybrid contribution 1.110 0.789 0.719 1.540 sum -5.802 8.288 -0.909 10.158 Atomic orbital electron populations 1.22044 0.95066 1.02104 1.02731 1.20842 0.95486 0.97177 0.95905 1.21889 1.01719 0.94907 1.01726 1.31046 1.07537 1.24663 1.06192 0.84397 1.22165 0.85533 0.98116 0.87339 0.91566 1.86855 1.81178 1.27403 1.38245 1.19374 0.94770 0.84181 0.98904 0.91577 1.20904 1.01467 1.00666 1.29819 0.90134 1.25078 0.98454 0.95589 0.95404 1.69902 1.38265 1.04067 1.40746 0.86434 0.82783 0.78024 0.79831 1.20634 1.21297 1.19741 1.30592 1.12497 1.11243 1.10525 1.10775 0.80574 0.79775 0.76404 1.93501 1.55935 1.82461 1.64517 1.93534 1.87453 1.79809 1.33581 0.91961 0.91369 0.92973 0.88980 0.92391 0.92576 0.91727 0.80150 0.92619 0.86015 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.06 37.16 0.34 -1.74 16 2 C -0.07 -1.03 2.19 -90.62 -0.20 -1.23 16 3 C -0.14 -1.60 8.89 37.16 0.33 -1.27 16 4 C -0.59 -9.26 2.61 -26.41 -0.07 -9.33 16 5 H 0.14 1.95 7.92 -51.93 -0.41 1.54 16 6 C 0.13 2.30 2.99 -26.42 -0.08 2.22 16 7 H 0.07 1.09 5.83 -51.93 -0.30 0.79 16 8 O -0.53 -9.45 11.17 -35.23 -0.39 -9.84 16 9 C 0.05 1.08 2.33 -90.68 -0.21 0.87 16 10 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 11 C -0.49 -12.49 8.08 -34.44 -0.28 -12.77 16 12 H 0.08 2.06 6.50 -52.49 -0.34 1.72 16 13 C 0.06 1.50 5.34 -17.81 -0.10 1.41 16 14 N -0.89 -24.32 12.13 55.43 0.67 -23.64 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 C -0.51 -11.15 6.28 38.26 0.24 -10.91 16 20 S 2.34 45.08 4.83 -107.50 -0.52 44.56 16 21 O -0.97 -20.64 18.16 -57.67 -1.05 -21.68 16 22 O -0.95 -20.26 17.07 -57.67 -0.98 -21.24 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.74 7.20 -51.93 -0.37 0.37 16 26 H 0.09 1.35 7.62 -51.93 -0.40 0.96 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.72 6.18 -51.93 -0.32 0.40 16 30 H 0.35 4.42 9.11 45.56 0.42 4.83 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.12 2.61 8.10 -51.93 -0.42 2.19 16 33 H 0.14 3.25 7.32 -51.93 -0.38 2.87 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -31.57 276.79 -6.93 -38.49 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.78 Total: 6.32 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: -0.02 Total: -32.74 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.67 Total: -23.64 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -2.43 Total: -52.77 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 45.08 SS G_CDS: -0.52 Total: 44.56 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.57 -6.93 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.999 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds