Wall clock time and date at job start Mon Mar 30 2020 03:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47077 * 2 1 4 4 C 1.52999 * 109.47049 * 119.99449 * 2 1 3 5 5 H 1.09006 * 110.23911 * 305.70577 * 4 2 1 6 6 C 1.53625 * 110.35007 * 183.66487 * 4 2 1 7 7 H 1.08998 * 108.92509 * 4.09197 * 6 4 2 8 8 O 1.42893 * 108.93532 * 122.62420 * 6 4 2 9 9 C 1.52973 * 112.26411 * 243.36147 * 6 4 2 10 10 H 1.09000 * 109.65457 * 89.91292 * 9 6 4 11 11 C 1.50699 * 109.64863 * 210.22601 * 9 6 4 12 12 H 1.07999 * 120.00249 * 4.48940 * 11 9 6 13 13 C 1.37885 * 120.00072 * 184.48993 * 11 9 6 14 14 N 1.31519 * 119.99635 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 120.00124 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46883 * 90.00389 * 15 13 11 17 17 H 1.48503 * 109.47196 * 210.00138 * 15 13 11 18 18 H 1.48500 * 109.47488 * 330.00347 * 15 13 11 19 19 C 1.55093 * 108.67023 * 330.06596 * 9 6 4 20 20 S 1.83246 * 110.26967 * 67.69734 * 4 2 1 21 21 O 1.42105 * 109.61074 * 252.38749 * 20 4 2 22 22 O 1.42094 * 109.61008 * 26.33930 * 20 4 2 23 23 H 1.08994 * 109.47953 * 300.00034 * 1 2 3 24 24 H 1.09007 * 109.47134 * 60.00495 * 1 2 3 25 25 H 1.08999 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47953 * 239.99966 * 2 1 3 27 27 H 1.09004 * 109.46917 * 300.00238 * 3 2 1 28 28 H 1.09005 * 109.47213 * 59.99224 * 3 2 1 29 29 H 1.08992 * 109.47421 * 179.97438 * 3 2 1 30 30 H 0.96703 * 114.00020 * 294.54661 * 8 6 4 31 31 H 0.96997 * 119.99840 * 180.02562 * 14 13 11 32 32 H 1.09000 * 111.07860 * 283.90234 * 19 9 6 33 33 H 1.08994 * 111.08100 * 159.85664 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6029 -0.2790 2.1447 6 6 3.5732 -0.6537 1.3166 7 1 3.9367 -0.0416 0.4912 8 8 3.9567 -0.0397 2.5486 9 6 4.2186 -2.0379 1.2298 10 1 4.4131 -2.2869 0.1866 11 6 5.5145 -2.0419 1.9991 12 1 5.8114 -1.1689 2.5613 13 6 6.3210 -3.1602 1.9853 14 7 5.9596 -4.2231 1.3002 15 14 7.9275 -3.1649 2.9383 16 1 7.6842 -3.6627 4.3160 17 1 8.9046 -4.0517 2.2569 18 1 8.4709 -1.7843 2.9995 19 6 3.2454 -3.0787 1.8420 20 16 1.6365 -2.5064 1.1609 21 8 0.5954 -2.8062 2.0805 22 8 1.5258 -2.9036 -0.1989 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 3.6926 0.8874 2.6250 31 1 6.5267 -5.0099 1.2908 32 1 3.2506 -3.0274 2.9308 33 1 3.4809 -4.0857 1.4976 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260678911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:46 Heat of formation + Delta-G solvation = -156.471919 kcal Electronic energy + Delta-G solvation = -17559.909304 eV Core-core repulsion = 14711.617836 eV Total energy + Delta-G solvation = -2848.291467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69525 -38.00365 -37.10097 -36.40206 -35.43337 -33.11711 -29.31040 -28.18964 -27.64333 -25.17866 -21.96820 -21.03826 -19.77788 -19.04960 -18.12013 -17.36495 -17.03098 -16.70067 -16.41704 -15.72893 -15.01788 -14.97486 -14.45858 -14.10679 -14.00387 -13.64312 -13.23932 -13.08297 -13.00140 -12.97761 -12.75946 -12.69444 -12.67071 -12.16280 -12.10634 -11.96655 -11.62972 -11.43364 -11.16991 -10.84660 -10.60481 -10.31884 -8.14608 -6.21561 -0.77346 1.43707 1.45693 1.55454 1.67312 2.43998 2.67688 2.97975 3.20278 3.50551 3.54655 3.87207 3.97742 4.17780 4.22516 4.25896 4.41395 4.59830 4.62528 4.79670 4.81051 4.90454 5.03949 5.19059 5.28367 5.34415 5.43927 5.56843 5.86065 6.21934 6.90327 7.15837 7.48865 8.95332 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.008783 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.421776 B = 3187.087632 C = 3698.250601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.550 4.550 5 H 0.168 0.832 6 C 0.137 3.863 7 H 0.088 0.912 8 O -0.551 6.551 9 C 0.034 3.966 10 H 0.041 0.959 11 C -0.497 4.497 12 H 0.080 0.920 13 C 0.005 3.995 14 N -0.925 5.925 15 Si 0.958 3.042 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.531 4.531 20 S 2.354 3.646 21 O -0.986 6.986 22 O -0.971 6.971 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.382 0.618 31 H 0.261 0.739 32 H 0.117 0.883 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 11.656 -1.000 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.663 4.663 5 H 0.186 0.814 6 C 0.077 3.923 7 H 0.105 0.895 8 O -0.357 6.357 9 C 0.014 3.986 10 H 0.059 0.941 11 C -0.536 4.536 12 H 0.098 0.902 13 C -0.194 4.194 14 N -0.564 5.564 15 Si 0.784 3.216 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.664 4.664 20 S 2.546 3.454 21 O -0.983 6.983 22 O -0.968 6.968 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.510 10.356 -1.255 12.854 hybrid contribution 1.242 -0.023 0.591 1.375 sum -6.268 10.332 -0.664 12.103 Atomic orbital electron populations 1.22139 0.94065 1.01326 1.05013 1.20994 0.96443 0.98760 0.93774 1.21893 1.01634 0.92631 1.03732 1.30868 1.06228 1.20087 1.09157 0.81419 1.21866 0.86270 0.95711 0.88449 0.89472 1.86781 1.81525 1.29729 1.37710 1.19359 0.94786 0.87379 0.97062 0.94095 1.21236 1.02718 1.00318 1.29311 0.90161 1.25835 1.01485 0.95556 0.96495 1.70037 1.39308 1.04587 1.42506 0.85545 0.79436 0.78229 0.78378 1.20657 1.21420 1.18751 1.30466 1.15754 1.09920 1.10281 1.09965 0.78600 0.81738 0.75098 1.93472 1.55701 1.84139 1.64969 1.93498 1.87208 1.81686 1.34401 0.89989 0.89014 0.95242 0.90293 0.90534 0.90580 0.91834 0.77007 0.92954 0.86422 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.06 71.98 0.65 -3.06 16 2 C -0.08 -1.94 2.19 -10.79 -0.02 -1.96 16 3 C -0.14 -2.43 8.89 71.98 0.64 -1.79 16 4 C -0.55 -15.92 2.61 30.80 0.08 -15.84 16 5 H 0.17 3.98 7.92 -2.38 -0.02 3.96 16 6 C 0.14 4.63 2.99 30.80 0.09 4.73 16 7 H 0.09 2.62 5.83 -2.39 -0.01 2.61 16 8 O -0.55 -17.81 11.17 -148.98 -1.66 -19.48 16 9 C 0.03 1.57 2.33 -10.83 -0.03 1.55 16 10 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 11 C -0.50 -25.54 8.08 25.60 0.21 -25.33 16 12 H 0.08 4.05 6.50 -2.91 -0.02 4.03 16 13 C 0.00 0.26 5.34 84.66 0.45 0.71 16 14 N -0.92 -52.30 12.13 21.45 0.26 -52.04 16 15 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 19 C -0.53 -23.90 6.28 72.70 0.46 -23.44 16 20 S 2.35 90.71 4.83 -56.49 -0.27 90.44 16 21 O -0.99 -41.63 18.16 -127.52 -2.32 -43.95 16 22 O -0.97 -42.14 17.07 -127.52 -2.18 -44.32 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.03 0.77 7.20 -2.39 -0.02 0.76 16 26 H 0.08 2.15 7.62 -2.39 -0.02 2.14 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 1.13 6.18 -2.39 -0.01 1.11 16 30 H 0.38 7.76 9.11 -74.06 -0.67 7.08 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.12 5.23 8.10 -2.39 -0.02 5.21 16 33 H 0.11 5.62 7.32 -2.39 -0.02 5.60 16 Total: -1.00 -69.08 276.79 -1.17 -70.25 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.44 Total: 18.81 kcal Atomic # 6 Polarization: -66.97 SS G_CDS: 2.53 Total: -64.44 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.26 Total: -52.04 kcal Atomic # 8 Polarization: -101.59 SS G_CDS: -6.16 Total: -107.74 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 90.71 SS G_CDS: -0.27 Total: 90.44 kcal Total: -69.08 -1.17 -70.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.224 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds