Wall clock time and date at job start Mon Mar 30 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20763 * 119.99711 * 2 1 4 4 C 1.50700 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.50694 * 109.47047 * 180.02562 * 4 2 1 6 6 C 1.38838 * 119.70964 * 90.00398 * 5 4 2 7 7 C 1.38204 * 120.68137 * 179.97438 * 6 5 4 8 8 C 1.39286 * 120.08882 * 359.97438 * 7 6 5 9 9 C 1.47286 * 120.29016 * 179.97438 * 8 7 6 10 10 O 1.21531 * 120.00306 * 174.07378 * 9 8 7 11 11 O 1.34810 * 119.99817 * 354.08119 * 9 8 7 12 12 C 1.42003 * 119.42384 * 0.02562 * 8 7 6 13 13 C 1.40862 * 120.33076 * 179.97438 * 12 8 7 14 14 H 1.07995 * 119.99990 * 322.71935 * 13 12 8 15 15 C 1.40299 * 119.99787 * 143.00246 * 13 12 8 16 16 N 1.30613 * 119.99786 * 169.30957 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 349.30418 * 15 13 12 18 18 H 1.48496 * 109.47039 * 86.20416 * 17 15 13 19 19 H 1.48503 * 109.47160 * 206.20716 * 17 15 13 20 20 H 1.48506 * 109.47290 * 326.20678 * 17 15 13 21 21 C 1.37604 * 119.70605 * 270.23437 * 5 4 2 22 22 H 1.09005 * 109.47049 * 270.00136 * 1 2 3 23 23 H 1.08995 * 109.47614 * 29.99983 * 1 2 3 24 24 H 1.09002 * 109.47439 * 150.00045 * 1 2 3 25 25 H 1.09004 * 109.46830 * 59.99852 * 4 2 1 26 26 H 1.09000 * 109.47402 * 300.00312 * 4 2 1 27 27 H 1.07997 * 119.65848 * 359.95150 * 6 5 4 28 28 H 1.07999 * 119.95273 * 179.97438 * 7 6 5 29 29 H 0.96700 * 116.99575 * 180.02562 * 11 9 8 30 30 H 0.96997 * 119.99895 * 179.97438 * 16 15 13 31 31 H 1.07999 * 120.06157 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7421 -1.0297 0.0011 6 6 4.4181 -0.9037 1.2072 7 6 5.7768 -0.6517 1.2311 8 6 6.4839 -0.5216 0.0382 9 6 7.9319 -0.2524 0.0585 10 8 8.5635 -0.2467 -0.9797 11 8 8.5565 -0.0125 1.2288 12 6 5.7966 -0.6496 -1.1978 13 6 6.4928 -0.5210 -2.4155 14 1 7.2889 0.2028 -2.5086 15 6 6.1480 -1.3291 -3.5094 16 7 6.6417 -1.0737 -4.6913 17 14 4.9831 -2.7705 -3.2753 18 1 3.5806 -2.2981 -3.3967 19 1 5.2513 -3.7974 -4.3140 20 1 5.1915 -3.3619 -1.9291 21 6 4.4121 -0.9005 -1.1939 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 1.9971 -1.8771 -0.8892 26 1 1.9972 -1.8763 0.8908 27 1 3.8766 -1.0034 2.1363 28 1 6.2908 -0.5555 2.1760 29 1 9.5074 0.1593 1.1917 30 1 6.4037 -1.6326 -5.4475 31 1 3.8770 -0.9959 -2.1271 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396128556.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:11 Heat of formation + Delta-G solvation = -116.152616 kcal Electronic energy + Delta-G solvation = -17678.128109 eV Core-core repulsion = 14696.141066 eV Total energy + Delta-G solvation = -2981.987043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.46815 -38.95660 -37.31352 -35.00858 -33.77070 -32.29823 -30.53183 -30.19464 -26.97235 -25.55936 -22.39009 -21.59749 -19.91010 -19.04135 -17.50466 -17.02848 -16.14636 -15.48005 -15.38874 -15.07831 -14.64363 -14.45000 -13.89000 -13.63245 -13.32439 -12.86222 -12.41039 -12.22088 -12.16846 -11.98369 -11.53323 -11.52109 -10.99047 -10.81318 -10.60179 -10.47595 -10.21467 -9.87174 -9.41974 -9.28656 -8.95460 -7.79279 -7.64996 -6.99872 -4.57092 1.90516 2.25907 2.58358 2.99778 3.09648 3.20620 3.67947 3.87810 4.18117 4.34858 4.55314 5.12247 5.23383 5.30224 5.32905 5.55201 5.63599 5.84719 6.00124 6.08764 6.12288 6.50387 6.53218 6.76766 7.06987 7.17994 7.34367 7.45757 7.56638 7.69794 7.82597 7.95471 8.37067 8.51826 8.71950 9.12901 9.98726 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.010190 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.200478 B = 2747.044305 C = 3918.847273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.349 3.651 3 O -0.439 6.439 4 C -0.135 4.135 5 C -0.021 4.021 6 C -0.242 4.242 7 C -0.018 4.018 8 C -0.239 4.239 9 C 0.514 3.486 10 O -0.513 6.513 11 O -0.536 6.536 12 C 0.122 3.878 13 C -0.398 4.398 14 H 0.116 0.884 15 C 0.078 3.922 16 N -0.789 5.789 17 Si 0.910 3.090 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.244 1.244 21 C -0.213 4.213 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.393 0.607 30 H 0.289 0.711 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.068 -3.137 7.461 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.223 3.777 3 O -0.311 6.311 4 C -0.172 4.172 5 C -0.021 4.021 6 C -0.261 4.261 7 C -0.036 4.036 8 C -0.241 4.241 9 C 0.363 3.637 10 O -0.403 6.403 11 O -0.347 6.347 12 C 0.117 3.883 13 C -0.424 4.424 14 H 0.133 0.867 15 C -0.143 4.143 16 N -0.412 5.412 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.167 1.167 21 C -0.232 4.232 22 H 0.110 0.890 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.249 0.751 30 H 0.099 0.901 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.924 -2.668 6.876 11.578 hybrid contribution 0.093 -0.583 -0.111 0.601 sum -8.831 -3.252 6.765 11.590 Atomic orbital electron populations 1.22299 0.95001 1.04455 1.04213 1.24558 0.91285 0.90540 0.71307 1.90459 1.71814 1.34820 1.34028 1.21226 0.94188 0.97424 1.04366 1.19144 0.92256 0.96752 0.93973 1.20147 0.94410 1.15970 0.95613 1.20913 0.93660 0.92779 0.96275 1.18678 0.88221 1.23001 0.94246 1.21048 0.88952 0.73797 0.79928 1.90857 1.67449 1.48949 1.33088 1.84639 1.27889 1.84564 1.37639 1.17451 0.90775 0.88073 0.91985 1.20010 1.14799 1.16074 0.91561 0.86650 1.26358 0.94871 0.99167 0.93855 1.69552 1.35861 1.35437 1.00390 0.86377 0.80001 0.80058 0.79997 1.19050 1.21368 1.16722 1.21007 0.94178 1.11840 0.96157 0.89044 0.90001 0.89935 0.88362 0.88075 0.88342 0.87286 0.75126 0.90067 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 10.25 36.00 0.37 -1.62 16 2 C 0.35 5.27 7.26 -29.04 -0.21 5.06 16 3 O -0.44 -8.80 16.77 6.00 0.10 -8.70 16 4 C -0.13 -2.04 5.74 -29.04 -0.17 -2.20 16 5 C -0.02 -0.43 4.37 -104.63 -0.46 -0.88 16 6 C -0.24 -4.90 9.67 -39.37 -0.38 -5.28 16 7 C -0.02 -0.39 9.60 -39.20 -0.38 -0.76 16 8 C -0.24 -5.89 5.92 -104.39 -0.62 -6.50 16 9 C 0.51 12.26 8.22 34.41 0.28 12.54 16 10 O -0.51 -13.79 14.45 -19.29 -0.28 -14.07 16 11 O -0.54 -10.08 12.70 -40.79 -0.52 -10.60 16 12 C 0.12 3.18 5.01 -106.53 -0.53 2.65 16 13 C -0.40 -11.25 8.10 -37.82 -0.31 -11.55 16 14 H 0.12 3.59 6.30 -52.49 -0.33 3.26 16 15 C 0.08 2.08 5.47 -17.30 -0.09 1.99 16 16 N -0.79 -21.29 13.92 55.57 0.77 -20.52 16 17 Si 0.91 20.29 24.61 -169.99 -4.18 16.10 16 18 H -0.26 -5.48 6.45 56.52 0.36 -5.11 16 19 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.24 -5.54 7.06 56.52 0.40 -5.14 16 21 C -0.21 -5.05 6.84 -38.88 -0.27 -5.31 16 22 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 25 H 0.10 1.33 8.08 -51.93 -0.42 0.91 16 26 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 27 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.11 2.09 7.62 -52.49 -0.40 1.69 16 29 H 0.39 5.39 9.11 45.56 0.42 5.81 16 30 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 31 H 0.11 2.53 4.96 -52.49 -0.26 2.27 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -33.00 274.42 -5.01 -38.01 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -2.28 Total: 7.51 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.76 Total: -11.88 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.77 Total: -20.52 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.70 Total: -33.36 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.18 Total: 16.10 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.00 -5.01 -38.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396128556.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.142 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds