Wall clock time and date at job start Mon Mar 30 2020 03:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.53004 * 109.46629 * 120.00055 * 2 1 3 5 5 C 1.50706 * 109.46531 * 184.99964 * 4 2 1 6 6 H 1.08002 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99514 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99982 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00263 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47058 * 89.99918 * 9 7 5 11 11 H 1.48499 * 109.47610 * 210.00130 * 9 7 5 12 12 H 1.48501 * 109.47340 * 330.00424 * 9 7 5 13 13 S 1.81398 * 109.47055 * 240.00001 * 2 1 3 14 14 O 1.42105 * 108.57879 * 305.51255 * 13 2 1 15 15 O 1.42097 * 108.57629 * 174.49016 * 13 2 1 16 16 C 1.81391 * 101.92304 * 60.00174 * 13 2 1 17 17 H 1.09003 * 110.80384 * 300.69945 * 16 13 2 18 18 C 1.54809 * 110.90958 * 177.07276 * 16 13 2 19 19 C 1.54105 * 104.18936 * 220.92352 * 18 16 13 20 20 O 1.43738 * 107.29148 * 357.96369 * 19 18 16 21 21 C 1.44422 * 107.00132 * 26.49502 * 20 19 18 22 22 H 1.09004 * 109.47046 * 59.99809 * 1 2 3 23 23 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47067 * 300.00382 * 1 2 3 25 25 H 1.08998 * 109.47238 * 304.99353 * 4 2 1 26 26 H 1.08992 * 109.47416 * 65.00199 * 4 2 1 27 27 H 0.97003 * 120.00516 * 179.97438 * 8 7 5 28 28 H 1.08996 * 110.48774 * 339.59671 * 18 16 13 29 29 H 1.09005 * 110.49134 * 102.24562 * 18 16 13 30 30 H 1.08994 * 109.88217 * 117.39489 * 19 18 16 31 31 H 1.09003 * 109.87633 * 238.54734 * 19 18 16 32 32 H 1.09006 * 110.65227 * 201.47972 * 21 20 19 33 33 H 1.08992 * 110.60760 * 78.46696 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1936 2.3578 8 7 5.5410 -1.1004 2.4136 9 14 3.3014 -2.1087 3.6954 10 1 3.1698 -3.5386 3.3169 11 1 4.0452 -2.0022 4.9763 12 1 1.9507 -1.5130 3.8563 13 16 2.1347 -0.8551 -1.4811 14 8 1.5479 -2.1485 -1.5284 15 8 3.5496 -0.7331 -1.5284 16 6 1.4230 0.1514 -2.8118 17 1 0.3354 0.1720 -2.7422 18 6 1.8782 -0.3644 -4.1986 19 6 2.1652 0.9182 -5.0031 20 8 1.8471 2.0345 -4.1553 21 6 2.0059 1.5875 -2.7913 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2057 27 1 6.0254 -1.5072 3.1490 28 1 2.7824 -0.9657 -4.1040 29 1 1.0830 -0.9412 -4.6710 30 1 3.2183 0.9529 -5.2822 31 1 1.5418 0.9423 -5.8970 32 1 1.4388 2.2222 -2.1102 33 1 3.0597 1.5701 -2.5135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703066340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:55 Heat of formation + Delta-G solvation = -149.447490 kcal Electronic energy + Delta-G solvation = -17236.124928 eV Core-core repulsion = 14388.138063 eV Total energy + Delta-G solvation = -2847.986865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29363 -37.95564 -37.02076 -36.60519 -34.29055 -33.45873 -30.61598 -29.70959 -25.17143 -24.17345 -23.45771 -22.24134 -19.66479 -18.96204 -18.57612 -17.72776 -17.20249 -16.73137 -16.39367 -16.00943 -15.64401 -14.96588 -14.80307 -14.56997 -14.11567 -14.02084 -13.65939 -13.38770 -13.04967 -12.99943 -12.82804 -12.68919 -12.57503 -12.48119 -12.17343 -11.92002 -11.78050 -11.53669 -11.42901 -10.86978 -10.79551 -10.70636 -8.28851 -6.36633 -0.94454 1.32560 1.34617 1.44226 1.91025 2.33065 2.56677 2.88560 3.03924 3.10562 3.23072 3.59072 3.84098 3.86118 3.97594 4.07264 4.12454 4.42615 4.50383 4.59072 4.63571 4.76541 4.81154 4.85313 4.90250 5.03282 5.19436 5.28910 5.53245 5.66409 6.22102 6.81263 7.28446 8.87358 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037076 B = 0.007430 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.020104 B = 3767.752384 C = 3954.464161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.537 4.537 3 H 0.150 0.850 4 C -0.006 4.006 5 C -0.560 4.560 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.943 5.943 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.232 1.232 13 S 2.409 3.591 14 O -0.980 6.980 15 O -0.968 6.968 16 C -0.606 4.606 17 H 0.187 0.813 18 C -0.142 4.142 19 C 0.046 3.954 20 O -0.379 6.379 21 C 0.063 3.937 22 H 0.103 0.897 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.267 0.733 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.164 4.986 -11.223 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.650 4.650 3 H 0.168 0.832 4 C -0.044 4.044 5 C -0.598 4.598 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.754 3.246 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.155 1.155 13 S 2.596 3.404 14 O -0.977 6.977 15 O -0.965 6.965 16 C -0.716 4.716 17 H 0.204 0.796 18 C -0.181 4.181 19 C -0.031 4.031 20 O -0.298 6.298 21 C -0.015 4.015 22 H 0.121 0.879 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.528 4.377 -11.281 18.150 hybrid contribution 0.280 -0.315 0.928 1.019 sum -13.248 4.062 -10.353 17.297 Atomic orbital electron populations 1.21912 0.88014 1.04398 1.06323 1.29754 1.07350 1.13169 1.14696 0.83246 1.19467 0.94833 0.95771 0.94343 1.21865 0.91898 1.35841 1.10214 0.91776 1.25986 0.95592 0.96697 1.00699 1.70077 1.08578 1.46328 1.33296 0.85941 0.80660 0.79500 0.78500 1.19806 1.20336 1.15457 1.08318 0.75593 0.77400 0.79095 1.93448 1.79855 1.37484 1.86930 1.93557 1.29647 1.87192 1.86149 1.31889 1.15485 1.10608 1.13602 0.79598 1.22924 1.03289 1.00119 0.91723 1.23367 1.01974 0.83207 0.94547 1.88830 1.89983 1.35168 1.15786 1.23575 1.01103 0.90373 0.86434 0.87875 0.91260 0.88734 0.92212 0.96095 0.92449 0.91323 0.85898 0.91513 0.86242 0.84176 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.95 71.98 0.64 -2.70 16 2 C -0.54 -18.03 2.52 30.60 0.08 -17.95 16 3 H 0.15 4.39 7.97 -2.39 -0.02 4.37 16 4 C -0.01 -0.26 3.52 29.85 0.10 -0.16 16 5 C -0.56 -32.47 8.71 25.60 0.22 -32.25 16 6 H 0.06 4.08 6.40 -2.91 -0.02 4.06 16 7 C 0.01 0.49 5.47 84.65 0.46 0.95 16 8 N -0.94 -60.98 13.96 21.45 0.30 -60.68 16 9 Si 0.93 44.25 27.47 68.60 1.88 46.13 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.23 -9.71 6.54 99.48 0.65 -9.06 16 13 S 2.41 88.88 3.57 -56.49 -0.20 88.68 16 14 O -0.98 -41.08 17.91 -127.37 -2.28 -43.36 16 15 O -0.97 -46.79 15.18 -127.37 -1.93 -48.72 16 16 C -0.61 -14.12 3.07 31.90 0.10 -14.02 16 17 H 0.19 2.80 6.91 -2.39 -0.02 2.78 16 18 C -0.14 -3.10 6.62 31.59 0.21 -2.89 16 19 C 0.05 0.90 7.70 72.36 0.56 1.46 16 20 O -0.38 -8.99 11.52 -148.98 -1.72 -10.71 16 21 C 0.06 1.45 6.79 72.67 0.49 1.95 16 22 H 0.10 1.39 6.57 -2.39 -0.02 1.37 16 23 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 24 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.06 2.50 7.20 -2.39 -0.02 2.48 16 26 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 27 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 28 H 0.07 1.73 7.78 -2.39 -0.02 1.71 16 29 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.07 1.79 7.56 -2.39 -0.02 1.77 16 Total: -1.00 -82.28 278.74 -0.04 -82.32 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.04 Total: 11.95 kcal Atomic # 6 Polarization: -68.48 SS G_CDS: 2.87 Total: -65.61 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.30 Total: -60.68 kcal Atomic # 8 Polarization: -96.85 SS G_CDS: -5.93 Total: -102.78 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Atomic # 16 Polarization: 88.88 SS G_CDS: -0.20 Total: 88.68 kcal Total: -82.28 -0.04 -82.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703066340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.129 kcal (2) G-P(sol) polarization free energy of solvation -82.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds