Wall clock time and date at job start Mon Mar 30 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21307 * 120.00009 * 2 1 4 4 N 1.34778 * 119.99474 * 180.02562 * 2 1 3 5 5 N 1.40104 * 119.99333 * 179.97438 * 4 2 1 6 6 C 1.29848 * 119.99284 * 179.97438 * 5 4 2 7 7 C 1.47305 * 119.99409 * 180.02562 * 6 5 4 8 8 C 1.39684 * 120.19611 * 180.02562 * 7 6 5 9 9 C 1.37891 * 119.90875 * 179.72487 * 8 7 6 10 10 C 1.38529 * 120.31344 * 0.02562 * 9 8 7 11 11 C 1.38112 * 120.40807 * 359.97438 * 10 9 8 12 12 C 1.38726 * 120.08245 * 0.02562 * 11 10 9 13 13 O 1.35612 * 120.15718 * 179.97438 * 12 11 10 14 14 C 1.34804 * 116.99684 * 354.41690 * 13 12 11 15 15 H 1.07996 * 120.00564 * 5.08200 * 14 13 12 16 16 C 1.38648 * 119.99708 * 185.08031 * 14 13 12 17 17 N 1.31558 * 120.00000 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47069 * 60.00045 * 18 16 14 20 20 H 1.48497 * 109.47035 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46948 * 300.00182 * 18 16 14 22 22 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46458 * 299.99503 * 1 2 3 24 24 H 1.08997 * 109.47125 * 59.99155 * 1 2 3 25 25 H 0.96993 * 120.00417 * 359.97438 * 4 2 1 26 26 H 1.07995 * 120.00657 * 0.02562 * 6 5 4 27 27 H 1.07998 * 120.04933 * 359.73792 * 8 7 6 28 28 H 1.07999 * 119.84311 * 179.97438 * 9 8 7 29 29 H 1.08002 * 119.79545 * 179.97438 * 10 9 8 30 30 H 1.08001 * 119.95869 * 180.02562 * 11 10 9 31 31 H 0.96996 * 120.00033 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1808 -1.1673 -0.0005 5 7 3.5819 -1.1672 -0.0011 6 6 4.2310 -2.2918 -0.0011 7 6 5.7040 -2.2918 -0.0011 8 6 6.4066 -3.4991 -0.0016 9 6 7.7855 -3.4922 -0.0073 10 6 8.4787 -2.2928 -0.0120 11 6 7.7972 -1.0915 -0.0116 12 6 6.4100 -1.0790 -0.0058 13 8 5.7393 0.0996 -0.0048 14 6 6.4762 1.2229 0.1073 15 1 7.5545 1.1636 0.1084 16 6 5.8496 2.4545 0.2211 17 7 4.5360 2.5269 0.2192 18 14 6.8706 4.0111 0.3757 19 1 7.7345 4.1576 -0.8232 20 1 5.9687 5.1861 0.4819 21 1 7.7202 3.9271 1.5907 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6958 -2.0072 -0.0005 26 1 3.6910 -3.2271 -0.0011 27 1 5.8706 -4.4367 0.0023 28 1 8.3276 -4.4263 -0.0073 29 1 9.5587 -2.2972 -0.0161 30 1 8.3449 -0.1607 -0.0157 31 1 4.0977 3.3885 0.2984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006949234.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:28 Heat of formation + Delta-G solvation = 20.934284 kcal Electronic energy + Delta-G solvation = -17579.249682 eV Core-core repulsion = 14635.499925 eV Total energy + Delta-G solvation = -2943.749757 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.97114 -38.53471 -36.26466 -35.45656 -32.30182 -31.96960 -30.07975 -28.94362 -27.88784 -25.20982 -22.99579 -21.45439 -20.04882 -19.82355 -17.79769 -17.06526 -16.22430 -16.00713 -14.80697 -14.65562 -14.38686 -14.03296 -13.54958 -13.44950 -13.25942 -12.66265 -12.38216 -12.30211 -12.24112 -11.52642 -11.44912 -10.98150 -10.74704 -10.71824 -10.63001 -10.34932 -9.42593 -9.14787 -8.87628 -8.82311 -8.62994 -7.62884 -6.88538 -6.13520 -3.78541 1.75773 2.50839 3.07420 3.23015 3.24766 3.26675 3.30389 3.73574 4.09677 4.76721 5.16845 5.26020 5.32921 5.35295 5.42236 5.63543 5.65084 5.75338 5.94304 5.98826 6.15501 6.33174 6.58229 6.80177 6.93448 7.19874 7.30876 7.45960 7.49367 7.89124 7.91748 8.13579 8.46906 9.16119 9.30509 9.88396 10.91338 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.011612 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.987552 B = 2410.657420 C = 4575.898821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.494 3.506 3 O -0.444 6.444 4 N -0.597 5.597 5 N -0.184 5.184 6 C 0.092 3.908 7 C -0.147 4.147 8 C -0.044 4.044 9 C -0.230 4.230 10 C -0.062 4.062 11 C -0.238 4.238 12 C 0.163 3.837 13 O -0.114 6.114 14 C -0.410 4.410 15 H 0.088 0.912 16 C 0.045 3.955 17 N -0.788 5.788 18 Si 0.928 3.072 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.272 1.272 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.365 0.635 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 -8.937 -0.172 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.279 3.721 3 O -0.310 6.310 4 N -0.341 5.341 5 N 0.010 4.990 6 C -0.116 4.116 7 C -0.151 4.151 8 C -0.065 4.065 9 C -0.250 4.250 10 C -0.081 4.081 11 C -0.257 4.257 12 C 0.103 3.897 13 O -0.010 6.010 14 C -0.486 4.486 15 H 0.106 0.894 16 C -0.166 4.166 17 N -0.416 5.416 18 Si 0.753 3.247 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.202 0.798 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.934 -6.772 -0.175 7.834 hybrid contribution 0.122 -0.683 0.081 0.699 sum -3.812 -7.455 -0.094 8.374 Atomic orbital electron populations 1.21809 0.92187 1.03271 1.04937 1.20663 0.89294 0.83658 0.78534 1.91094 1.68862 1.29274 1.41802 1.47376 1.03161 1.08448 1.75133 1.75850 0.88593 1.23605 1.10980 1.24198 0.94282 0.93088 1.00077 1.17352 0.88962 0.91379 1.17431 1.20624 0.93896 0.95033 0.96942 1.20383 0.93738 0.97015 1.13850 1.20824 0.98404 0.92376 0.96521 1.21112 0.94071 0.98517 1.12001 1.19452 0.90303 0.87326 0.92616 1.84184 1.33700 1.10094 1.73047 1.21299 0.90880 0.82655 1.53778 0.89445 1.25366 0.96119 0.98171 0.96993 1.70277 1.06511 1.25485 1.39367 0.86003 0.79085 0.80597 0.78986 1.19713 1.20439 1.19714 0.91418 0.89061 0.89078 0.79816 0.88482 0.86979 0.87616 0.87664 0.85537 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 10.39 36.01 0.37 -1.62 16 2 C 0.49 9.75 8.06 -10.98 -0.09 9.66 16 3 O -0.44 -11.69 16.35 5.53 0.09 -11.60 16 4 N -0.60 -11.25 6.26 31.22 0.20 -11.05 16 5 N -0.18 -4.32 8.90 32.13 0.29 -4.04 16 6 C 0.09 1.86 10.75 -14.70 -0.16 1.70 16 7 C -0.15 -3.15 5.88 -104.88 -0.62 -3.76 16 8 C -0.04 -0.78 9.79 -39.17 -0.38 -1.16 16 9 C -0.23 -3.96 10.03 -39.60 -0.40 -4.36 16 10 C -0.06 -1.15 10.03 -39.52 -0.40 -1.55 16 11 C -0.24 -5.30 9.16 -39.45 -0.36 -5.66 16 12 C 0.16 4.08 6.66 -38.62 -0.26 3.82 16 13 O -0.11 -3.32 7.64 0.55 0.00 -3.32 16 14 C -0.41 -11.83 9.49 30.88 0.29 -11.54 16 15 H 0.09 2.34 5.21 -52.49 -0.27 2.06 16 16 C 0.04 1.27 5.49 -17.52 -0.10 1.17 16 17 N -0.79 -24.02 12.59 55.48 0.70 -23.32 16 18 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.37 5.00 8.49 -182.60 -1.55 3.45 16 26 H 0.10 1.47 8.02 -52.49 -0.42 1.05 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 31 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -36.18 282.37 -5.78 -41.96 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.20 Total: 4.12 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.09 Total: -13.30 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 1.18 Total: -38.41 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -36.18 -5.78 -41.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006949234.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.894 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds