Wall clock time and date at job start Mon Mar 30 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21307 * 120.00009 * 2 1 4 4 N 1.34778 * 119.99474 * 180.02562 * 2 1 3 5 5 N 1.40104 * 119.99333 * 179.97438 * 4 2 1 6 6 C 1.29848 * 119.99284 * 179.97438 * 5 4 2 7 7 C 1.47305 * 119.99409 * 180.02562 * 6 5 4 8 8 C 1.39684 * 120.19611 * 180.02562 * 7 6 5 9 9 C 1.37891 * 119.90875 * 179.72487 * 8 7 6 10 10 C 1.38529 * 120.31344 * 0.02562 * 9 8 7 11 11 C 1.38112 * 120.40807 * 359.97438 * 10 9 8 12 12 C 1.38726 * 120.08245 * 0.02562 * 11 10 9 13 13 O 1.35612 * 120.15718 * 179.97438 * 12 11 10 14 14 C 1.34804 * 116.99684 * 354.41690 * 13 12 11 15 15 H 1.07996 * 120.00564 * 5.08200 * 14 13 12 16 16 C 1.38648 * 119.99708 * 185.08031 * 14 13 12 17 17 N 1.31558 * 120.00000 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47069 * 60.00045 * 18 16 14 20 20 H 1.48497 * 109.47035 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46948 * 300.00182 * 18 16 14 22 22 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46458 * 299.99503 * 1 2 3 24 24 H 1.08997 * 109.47125 * 59.99155 * 1 2 3 25 25 H 0.96993 * 120.00417 * 359.97438 * 4 2 1 26 26 H 1.07995 * 120.00657 * 0.02562 * 6 5 4 27 27 H 1.07998 * 120.04933 * 359.73792 * 8 7 6 28 28 H 1.07999 * 119.84311 * 179.97438 * 9 8 7 29 29 H 1.08002 * 119.79545 * 179.97438 * 10 9 8 30 30 H 1.08001 * 119.95869 * 180.02562 * 11 10 9 31 31 H 0.96996 * 120.00033 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1808 -1.1673 -0.0005 5 7 3.5819 -1.1672 -0.0011 6 6 4.2310 -2.2918 -0.0011 7 6 5.7040 -2.2918 -0.0011 8 6 6.4066 -3.4991 -0.0016 9 6 7.7855 -3.4922 -0.0073 10 6 8.4787 -2.2928 -0.0120 11 6 7.7972 -1.0915 -0.0116 12 6 6.4100 -1.0790 -0.0058 13 8 5.7393 0.0996 -0.0048 14 6 6.4762 1.2229 0.1073 15 1 7.5545 1.1636 0.1084 16 6 5.8496 2.4545 0.2211 17 7 4.5360 2.5269 0.2192 18 14 6.8706 4.0111 0.3757 19 1 7.7345 4.1576 -0.8232 20 1 5.9687 5.1861 0.4819 21 1 7.7202 3.9271 1.5907 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6958 -2.0072 -0.0005 26 1 3.6910 -3.2271 -0.0011 27 1 5.8706 -4.4367 0.0023 28 1 8.3276 -4.4263 -0.0073 29 1 9.5587 -2.2972 -0.0161 30 1 8.3449 -0.1607 -0.0157 31 1 4.0977 3.3885 0.2984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006949234.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:28 Heat of formation + Delta-G solvation = -6.725947 kcal Electronic energy + Delta-G solvation = -17580.449120 eV Core-core repulsion = 14635.499925 eV Total energy + Delta-G solvation = -2944.949195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66355 -40.11637 -37.99133 -37.08098 -34.17278 -33.67578 -31.53166 -30.47496 -29.31065 -27.20607 -24.55648 -23.15073 -21.56505 -21.39893 -19.64182 -18.74413 -17.87059 -17.51169 -16.45487 -16.11104 -16.07822 -15.76697 -15.37194 -15.04639 -14.79485 -14.20587 -14.05261 -13.66397 -13.41430 -13.29486 -13.00738 -12.65741 -12.37146 -12.35243 -12.24113 -12.06704 -11.19909 -10.73905 -10.65948 -10.45088 -10.35926 -9.22413 -8.61203 -8.14831 -5.91290 0.19195 0.89380 1.33063 1.44749 1.48517 1.54929 1.93139 2.23132 2.24490 3.03142 3.38200 3.66605 3.89559 3.90595 4.22671 4.35060 4.45822 4.52351 4.65835 4.68417 4.83873 5.02738 5.05122 5.18875 5.26500 5.37155 5.74643 5.78512 5.86420 6.11616 6.34367 6.51873 7.00228 7.13947 7.88889 7.99347 8.92320 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.011612 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.987552 B = 2410.657420 C = 4575.898821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.481 3.519 3 O -0.523 6.523 4 N -0.585 5.585 5 N -0.255 5.255 6 C 0.099 3.901 7 C -0.163 4.163 8 C -0.033 4.033 9 C -0.205 4.205 10 C -0.057 4.057 11 C -0.265 4.265 12 C 0.126 3.874 13 O -0.167 6.167 14 C -0.438 4.438 15 H 0.092 0.908 16 C -0.017 4.017 17 N -0.844 5.844 18 Si 1.002 2.998 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.261 1.261 22 H 0.112 0.888 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.393 0.607 26 H 0.153 0.847 27 H 0.166 0.834 28 H 0.156 0.844 29 H 0.141 0.859 30 H 0.111 0.889 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -12.922 -0.146 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.269 3.731 3 O -0.395 6.395 4 N -0.332 5.332 5 N -0.061 5.061 6 C -0.109 4.109 7 C -0.167 4.167 8 C -0.053 4.053 9 C -0.224 4.224 10 C -0.076 4.076 11 C -0.285 4.285 12 C 0.070 3.930 13 O -0.068 6.068 14 C -0.514 4.514 15 H 0.110 0.890 16 C -0.221 4.221 17 N -0.476 5.476 18 Si 0.823 3.177 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.186 1.186 22 H 0.130 0.870 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.233 0.767 26 H 0.170 0.830 27 H 0.183 0.817 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.129 0.871 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.352 -10.870 -0.153 11.376 hybrid contribution 0.075 -0.004 0.057 0.094 sum -3.277 -10.874 -0.096 11.358 Atomic orbital electron populations 1.21791 0.86056 1.06518 1.05906 1.22156 0.92013 0.82693 0.76282 1.91084 1.71033 1.31936 1.45412 1.47231 1.01880 1.09778 1.74272 1.75843 0.91373 1.26592 1.12297 1.24608 0.93893 0.94529 0.97913 1.18065 0.90379 0.91595 1.16630 1.21241 0.94442 0.95368 0.94286 1.21074 0.93902 0.98201 1.09195 1.21284 1.00369 0.91463 0.94526 1.21233 0.93489 0.99852 1.13884 1.20298 0.91936 0.87825 0.92982 1.84203 1.34438 1.10932 1.77210 1.21664 0.91293 0.83683 1.54763 0.89049 1.26495 0.97404 1.01495 0.96687 1.70533 1.08424 1.25354 1.43286 0.84907 0.77375 0.75927 0.79486 1.18572 1.20241 1.18555 0.86958 0.88034 0.87961 0.76661 0.83019 0.81702 0.82628 0.84141 0.87149 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 10.39 71.24 0.74 -2.55 16 2 C 0.48 19.50 8.06 87.66 0.71 20.21 16 3 O -0.52 -29.60 16.35 -3.11 -0.05 -29.65 16 4 N -0.59 -22.05 6.26 -173.51 -1.09 -23.13 16 5 N -0.25 -12.27 8.90 -52.26 -0.47 -12.74 16 6 C 0.10 3.85 10.75 87.37 0.94 4.79 16 7 C -0.16 -6.74 5.88 -20.03 -0.12 -6.86 16 8 C -0.03 -1.00 9.79 22.54 0.22 -0.78 16 9 C -0.21 -5.84 10.03 22.26 0.22 -5.61 16 10 C -0.06 -1.95 10.03 22.31 0.22 -1.72 16 11 C -0.27 -11.98 9.16 22.36 0.20 -11.77 16 12 C 0.13 6.48 6.66 22.90 0.15 6.63 16 13 O -0.17 -10.44 7.64 -20.96 -0.16 -10.60 16 14 C -0.44 -27.20 9.49 67.92 0.64 -26.55 16 15 H 0.09 5.27 5.21 -2.91 -0.02 5.26 16 16 C -0.02 -1.04 5.49 84.83 0.47 -0.58 16 17 N -0.84 -55.95 12.59 21.61 0.27 -55.67 16 18 Si 1.00 46.78 29.55 68.60 2.03 48.81 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H 0.11 1.57 7.91 -2.39 -0.02 1.55 16 23 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 24 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.39 9.92 8.49 -213.33 -1.81 8.11 16 26 H 0.15 3.93 8.02 -2.91 -0.02 3.91 16 27 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 28 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 31 H 0.26 16.42 8.31 -92.71 -0.77 15.64 16 Total: -1.00 -91.55 282.37 4.30 -87.26 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.64 Total: 20.53 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.40 Total: -24.79 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -1.28 Total: -91.55 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.21 Total: -40.25 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -91.55 4.30 -87.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006949234.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.531 kcal (2) G-P(sol) polarization free energy of solvation -91.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds