Wall clock time and date at job start Mon Mar 30 2020 04:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36930 * 120.00242 * 2 1 4 4 H 1.08004 * 119.99656 * 202.37435 * 3 2 1 5 5 C 1.38807 * 120.00134 * 22.37316 * 3 2 1 6 6 N 1.31622 * 120.00131 * 11.32859 * 5 3 2 7 7 Si 1.86804 * 119.99907 * 191.32873 * 5 3 2 8 8 H 1.48500 * 109.47306 * 89.99835 * 7 5 3 9 9 H 1.48496 * 109.47027 * 210.00241 * 7 5 3 10 10 H 1.48504 * 109.46971 * 330.00001 * 7 5 3 11 11 C 1.46507 * 119.99212 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47095 * 269.99765 * 11 2 1 13 13 C 1.38410 * 119.90699 * 269.98220 * 12 11 2 14 14 C 1.38128 * 120.30843 * 179.97438 * 13 12 11 15 15 C 1.38614 * 119.91659 * 0.04774 * 14 13 12 16 16 O 1.35554 * 132.99506 * 179.97438 * 15 14 13 17 17 C 1.34230 * 109.18165 * 180.02562 * 16 15 14 18 18 O 1.21596 * 125.27362 * 179.97438 * 17 16 15 19 19 N 1.34776 * 109.44406 * 0.24442 * 17 16 15 20 20 H 0.97006 * 126.25333 * 179.73408 * 19 17 16 21 21 C 1.39456 * 107.49501 * 359.61389 * 19 17 16 22 22 C 1.38129 * 119.90571 * 90.00368 * 12 11 2 23 23 H 1.09001 * 109.47054 * 274.21347 * 1 2 3 24 24 H 1.09003 * 109.46642 * 34.20332 * 1 2 3 25 25 H 1.08999 * 109.47508 * 154.20415 * 1 2 3 26 26 H 0.97001 * 119.99639 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46618 * 150.00147 * 11 2 1 28 28 H 1.08996 * 109.47378 * 30.00214 * 11 2 1 29 29 H 1.07990 * 119.84714 * 359.97438 * 13 12 11 30 30 H 1.07995 * 120.03661 * 180.02562 * 14 13 12 31 31 H 1.08006 * 120.08494 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2209 -0.3561 5 6 1.5341 2.3427 0.4576 6 7 0.3845 2.2688 1.0943 7 14 2.3372 4.0046 0.1697 8 1 1.8684 4.5635 -1.1238 9 1 1.9691 4.9297 1.2713 10 1 3.8128 3.8414 0.1325 11 6 2.1974 -1.2689 0.0006 12 6 2.4485 -1.7033 1.4216 13 6 3.6028 -1.3028 2.0719 14 6 3.8412 -1.6956 3.3745 15 6 2.9215 -2.4956 4.0346 16 8 2.8843 -3.0255 5.2817 17 6 1.7548 -3.7365 5.4252 18 8 1.4259 -4.3368 6.4302 19 7 1.0449 -3.6868 4.2807 20 1 0.1919 -4.1182 4.1155 21 6 1.7592 -2.8995 3.3781 22 6 1.5263 -2.5004 2.0712 23 1 -0.3633 0.0755 1.0249 24 1 -0.3633 0.8500 -0.5777 25 1 -0.3634 -0.9252 -0.4472 26 1 -0.0454 3.0773 1.4143 27 1 3.1498 -1.1388 -0.5133 28 1 1.6083 -2.0287 -0.5129 29 1 4.3205 -0.6802 1.5585 30 1 4.7431 -1.3802 3.8778 31 1 0.6261 -2.8119 1.5622 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258795708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:25 Heat of formation + Delta-G solvation = -13.475906 kcal Electronic energy + Delta-G solvation = -17629.570083 eV Core-core repulsion = 14684.328188 eV Total energy + Delta-G solvation = -2945.241895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -44.28431 -39.87427 -38.70637 -37.17633 -36.23929 -33.52439 -31.61187 -30.56793 -27.91590 -27.29402 -24.57876 -24.01000 -23.73230 -22.39522 -19.57421 -18.90505 -18.67716 -18.44570 -17.34619 -16.72751 -16.67789 -15.87281 -15.46276 -15.10086 -14.97134 -14.84086 -14.44697 -14.00877 -13.68976 -13.23694 -12.86476 -12.81135 -12.49703 -12.46054 -12.20683 -12.02513 -11.93865 -11.79398 -11.72011 -10.59492 -9.65629 -9.20164 -8.75869 -7.78291 -5.24480 0.16169 0.21498 1.20371 1.30808 1.51374 1.53205 1.60248 1.88271 2.52298 2.68155 3.37401 3.41038 3.82251 3.92724 4.04752 4.24582 4.37996 4.42087 4.73860 4.85978 4.92639 5.02061 5.14306 5.27218 5.42228 5.46363 5.60507 5.71202 5.75425 5.80993 6.11747 6.37611 6.60024 7.20108 7.91479 8.33891 9.24739 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.005908 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.102975 B = 4738.441470 C = 4880.718029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.605 5.605 3 C -0.250 4.250 4 H 0.082 0.918 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.960 3.040 8 H -0.290 1.290 9 H -0.304 1.304 10 H -0.263 1.263 11 C 0.179 3.821 12 C -0.069 4.069 13 C -0.090 4.090 14 C -0.078 4.078 15 C -0.004 4.004 16 O -0.249 6.249 17 C 0.635 3.365 18 O -0.531 6.531 19 N -0.627 5.627 20 H 0.454 0.546 21 C 0.059 3.941 22 C -0.093 4.093 23 H 0.000 1.000 24 H 0.016 0.984 25 H 0.036 0.964 26 H 0.244 0.756 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -10.069 -0.776 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.326 5.326 3 C -0.380 4.380 4 H 0.099 0.901 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.790 3.210 8 H -0.217 1.217 9 H -0.232 1.232 10 H -0.187 1.187 11 C 0.053 3.947 12 C -0.074 4.074 13 C -0.110 4.110 14 C -0.097 4.097 15 C -0.050 4.050 16 O -0.154 6.154 17 C 0.389 3.611 18 O -0.418 6.418 19 N -0.285 5.285 20 H 0.300 0.700 21 C -0.039 4.039 22 C -0.114 4.114 23 H 0.018 0.982 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.167 0.833 30 H 0.175 0.825 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.193 -10.197 0.028 11.025 hybrid contribution -0.556 0.989 0.383 1.198 sum 3.636 -9.208 0.411 9.909 Atomic orbital electron populations 1.20591 0.82687 0.96297 0.97461 1.44306 1.02098 1.01401 1.84824 1.19596 0.98496 0.85974 1.33964 0.90055 1.25736 0.98388 1.01655 0.98935 1.70232 1.19315 1.27146 1.41819 0.85357 0.78881 0.80416 0.76365 1.21666 1.23176 1.18728 1.20186 0.97684 0.87270 0.89544 1.21097 0.92735 0.92865 1.00664 1.21068 0.98185 0.98658 0.93079 1.20241 0.98829 0.96532 0.94090 1.19235 0.98906 1.04400 0.82499 1.84879 1.39718 1.58825 1.32000 1.18531 0.78879 0.79675 0.84013 1.91124 1.71658 1.47716 1.31338 1.43386 1.24499 1.49044 1.11572 0.70015 1.18528 0.92919 0.98686 0.93782 1.20093 1.01145 0.99956 0.90222 0.98152 0.96474 0.94551 0.94669 0.90788 0.90415 0.83337 0.82484 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.78 9.01 127.77 1.15 8.93 16 2 N -0.61 -26.37 2.91 -731.29 -2.13 -28.50 16 3 C -0.25 -12.21 9.67 84.03 0.81 -11.40 16 4 H 0.08 3.74 7.84 -2.91 -0.02 3.72 16 5 C -0.05 -2.73 5.13 84.86 0.44 -2.29 16 6 N -0.94 -53.03 10.59 21.65 0.23 -52.80 16 7 Si 0.96 42.65 29.57 68.60 2.03 44.67 16 8 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 9 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 11 C 0.18 5.78 5.83 85.63 0.50 6.28 16 12 C -0.07 -2.14 5.46 -19.85 -0.11 -2.25 16 13 C -0.09 -2.65 9.68 22.28 0.22 -2.44 16 14 C -0.08 -2.18 10.06 22.33 0.22 -1.96 16 15 C 0.00 -0.14 7.35 22.66 0.17 0.03 16 16 O -0.25 -8.17 10.72 8.58 0.09 -8.07 16 17 C 0.63 20.36 9.44 129.79 1.23 21.59 16 18 O -0.53 -19.50 18.05 19.20 0.35 -19.16 16 19 N -0.63 -16.31 6.22 -430.03 -2.68 -18.99 16 20 H 0.45 8.66 8.96 -92.70 -0.83 7.83 16 21 C 0.06 1.71 7.25 38.31 0.28 1.99 16 22 C -0.09 -2.64 9.72 22.33 0.22 -2.42 16 23 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 24 H 0.02 0.83 7.19 -2.39 -0.02 0.82 16 25 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 26 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 27 H 0.07 2.21 7.97 -2.39 -0.02 2.19 16 28 H 0.08 2.11 7.80 -2.39 -0.02 2.09 16 29 H 0.15 4.01 8.06 -2.92 -0.02 3.99 16 30 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -63.89 275.51 3.35 -60.54 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.33 Total: 6.24 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.12 Total: 16.06 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.57 Total: -100.29 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: 0.44 Total: -27.23 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -63.89 3.35 -60.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258795708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.066 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds