Wall clock time and date at job start Mon Mar 30 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47537 * 2 1 4 4 H 1.08996 * 109.47083 * 305.00126 * 3 2 1 5 5 C 1.50693 * 109.47369 * 185.00039 * 3 2 1 6 6 H 1.08003 * 119.99926 * 240.00014 * 5 3 2 7 7 C 1.37880 * 120.00152 * 59.99701 * 5 3 2 8 8 N 1.31517 * 119.99748 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99890 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47337 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47013 * 120.00253 * 9 7 5 12 12 H 1.48503 * 109.47043 * 240.00193 * 9 7 5 13 13 N 1.46499 * 109.46706 * 64.99766 * 3 2 1 14 14 C 1.34774 * 120.00216 * 274.99969 * 13 3 2 15 15 O 1.21600 * 120.00198 * 0.02562 * 14 13 3 16 16 C 1.47528 * 120.00098 * 180.02562 * 14 13 3 17 17 C 1.39797 * 120.06730 * 180.02562 * 16 14 13 18 18 C 1.37605 * 119.93088 * 180.02562 * 17 16 14 19 19 C 1.39226 * 120.06644 * 359.97438 * 18 17 16 20 20 N 1.39040 * 119.92827 * 179.97438 * 19 18 17 21 21 C 1.39217 * 120.13769 * 0.27615 * 19 18 17 22 22 C 1.37607 * 120.06910 * 359.44806 * 21 19 18 23 23 H 1.09005 * 109.46706 * 60.00017 * 1 2 3 24 24 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46850 * 300.00124 * 1 2 3 26 26 H 1.09000 * 109.46850 * 239.99876 * 2 1 3 27 27 H 1.08998 * 109.46721 * 120.00381 * 2 1 3 28 28 H 0.96998 * 119.99245 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00263 * 95.00834 * 13 3 2 30 30 H 1.08000 * 120.03456 * 359.97438 * 17 16 14 31 31 H 1.07994 * 119.96721 * 179.97438 * 18 17 16 32 32 H 0.97001 * 120.00446 * 0.02562 * 20 19 18 33 33 H 0.97005 * 119.99828 * 179.72463 * 20 19 18 34 34 H 1.08003 * 119.96773 * 179.70394 * 21 19 18 35 35 H 1.07999 * 120.03528 * 180.25107 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8782 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0051 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4962 -0.5193 -1.4626 12 1 6.4001 1.6155 -2.6091 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6643 1.3669 15 8 -0.3415 2.6319 0.4319 16 6 0.0452 3.3243 2.6274 17 6 -1.2173 3.9124 2.7485 18 6 -1.5780 4.5278 3.9252 19 6 -0.6873 4.5646 4.9947 20 7 -1.0546 5.1875 6.1822 21 6 0.5725 3.9844 4.8754 22 6 0.9371 3.3626 3.7032 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8294 -0.0605 -2.9502 29 1 2.2720 2.1231 1.9978 30 1 -1.9084 3.8845 1.9191 31 1 -2.5530 4.9826 4.0193 32 1 -1.9307 5.5956 6.2651 33 1 -0.4364 5.2103 6.9294 34 1 1.2631 4.0187 5.7051 35 1 1.9131 2.9092 3.6126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054179964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:36 Heat of formation + Delta-G solvation = -43.676175 kcal Electronic energy + Delta-G solvation = -17692.882652 eV Core-core repulsion = 14882.164269 eV Total energy + Delta-G solvation = -2810.718383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04796 -39.54727 -36.89279 -35.40244 -34.26551 -32.84974 -31.75663 -29.96564 -28.61257 -25.18297 -23.98704 -23.58081 -21.87835 -21.02739 -19.34200 -18.10535 -17.82875 -17.38897 -17.02422 -16.25080 -16.13992 -15.50347 -14.89027 -14.68806 -14.50101 -14.34431 -14.17834 -13.68674 -13.43832 -13.33371 -13.12429 -12.85045 -12.68705 -12.12970 -12.03699 -11.89151 -11.61265 -11.46583 -11.01951 -10.66556 -10.49615 -9.92927 -9.60614 -8.44226 -8.14175 -6.31685 0.20125 0.53837 1.45429 1.46153 1.58442 2.16323 2.38997 2.74899 2.99481 3.09898 3.15934 3.93757 4.09337 4.13409 4.46707 4.50528 4.58697 4.61881 4.77437 4.79197 5.08005 5.12735 5.26230 5.31127 5.41839 5.46143 5.57157 5.62387 5.66949 5.81269 5.86428 5.99271 6.18962 6.55699 6.76567 7.00076 7.06917 7.35642 7.65022 8.91663 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032617 B = 0.005294 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.253626 B = 5287.971727 C = 5880.680380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.704 5.704 14 C 0.543 3.457 15 O -0.597 6.597 16 C -0.218 4.218 17 C -0.027 4.027 18 C -0.212 4.212 19 C 0.245 3.755 20 N -0.853 5.853 21 C -0.208 4.208 22 C -0.038 4.038 23 H 0.025 0.975 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.154 0.846 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 7.793 18.449 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.333 3.667 15 O -0.481 6.481 16 C -0.224 4.224 17 C -0.046 4.046 18 C -0.234 4.234 19 C 0.135 3.865 20 N -0.391 5.391 21 C -0.230 4.230 22 C -0.057 4.057 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.236 0.764 30 H 0.136 0.864 31 H 0.166 0.834 32 H 0.240 0.760 33 H 0.242 0.758 34 H 0.171 0.829 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.089 7.666 17.613 20.151 hybrid contribution 0.916 -0.056 -0.255 0.953 sum -5.172 7.610 17.358 19.646 Atomic orbital electron populations 1.21677 0.97126 0.99061 1.00190 1.21778 0.93665 0.99163 1.01275 1.18384 0.93755 0.89173 0.81334 0.98566 1.21609 0.91317 1.38889 1.06778 0.91072 1.25792 1.03443 0.94322 0.94944 1.70067 1.37032 1.38429 1.09859 0.85296 0.78957 0.77848 0.78206 1.18401 1.20354 1.21019 1.46167 1.15429 1.56125 1.17498 1.18782 0.81770 0.78125 0.88044 1.90684 1.52736 1.62351 1.42332 1.19740 0.98271 1.09668 0.94676 1.20998 0.94040 0.92237 0.97375 1.20695 1.01636 1.08303 0.92798 1.18017 0.92398 0.88979 0.87073 1.42391 1.21486 1.62535 1.12711 1.20757 0.96859 1.05940 0.99483 1.21218 0.98184 0.94691 0.91617 0.95601 0.93496 0.94005 0.90869 0.94074 0.92609 0.76434 0.86447 0.83435 0.75957 0.75824 0.82874 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.51 71.98 0.61 -5.29 16 2 C -0.12 -6.19 5.45 30.60 0.17 -6.02 16 3 C 0.28 14.91 2.24 44.24 0.10 15.01 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 5 C -0.55 -29.83 8.73 25.60 0.22 -29.61 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.01 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -53.42 11.30 21.45 0.24 -53.18 16 9 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 13 N -0.70 -31.42 4.97 -449.29 -2.23 -33.66 16 14 C 0.54 24.01 6.33 86.69 0.55 24.56 16 15 O -0.60 -31.01 13.47 -4.03 -0.05 -31.07 16 16 C -0.22 -7.48 5.88 -20.07 -0.12 -7.60 16 17 C -0.03 -0.81 9.58 22.50 0.22 -0.59 16 18 C -0.21 -4.67 9.87 22.36 0.22 -4.45 16 19 C 0.24 4.53 6.75 38.47 0.26 4.79 16 20 N -0.85 -8.37 9.05 -51.38 -0.47 -8.84 16 21 C -0.21 -4.19 9.87 22.36 0.22 -3.97 16 22 C -0.04 -1.00 9.53 22.50 0.21 -0.79 16 23 H 0.02 1.32 7.84 -2.38 -0.02 1.30 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.97 5.64 -2.39 -0.01 1.95 16 26 H 0.07 4.17 5.95 -2.39 -0.01 4.15 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.40 15.24 6.56 -92.71 -0.61 14.63 16 30 H 0.12 3.84 7.64 -2.91 -0.02 3.82 16 31 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.41 2.50 8.83 -92.71 -0.82 1.68 16 33 H 0.41 2.34 8.83 -92.70 -0.82 1.52 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.13 3.26 6.39 -2.91 -0.02 3.24 16 Total: -1.00 -71.45 291.39 1.52 -69.93 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -1.11 Total: 24.80 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.11 Total: -12.71 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -2.46 Total: -95.68 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.45 1.52 -69.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.253 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds