Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38679 * 120.11304 * 2 1 4 4 N 1.39711 * 120.00647 * 0.02562 * 3 2 1 5 5 C 1.38986 * 119.99053 * 180.24937 * 3 2 1 6 6 C 1.38240 * 120.22174 * 359.76684 * 5 3 2 7 7 C 1.37992 * 120.22851 * 359.97438 * 6 5 3 8 8 C 1.39453 * 120.11151 * 179.74177 * 2 1 3 9 9 C 1.47863 * 120.11417 * 0.02562 * 8 2 1 10 10 O 1.21557 * 119.99369 * 353.54096 * 9 8 2 11 11 N 1.34773 * 120.00200 * 173.26496 * 9 8 2 12 12 C 1.46502 * 119.99915 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47016 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47188 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99797 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00563 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99497 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00592 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46725 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47292 * 119.99692 * 18 16 14 21 21 H 1.48500 * 109.46754 * 240.00255 * 18 16 14 22 22 H 1.08996 * 109.47632 * 263.74270 * 1 2 3 23 23 H 1.09003 * 109.47306 * 23.74699 * 1 2 3 24 24 H 1.09009 * 109.46912 * 143.74014 * 1 2 3 25 25 H 0.97000 * 120.00331 * 180.23253 * 4 3 2 26 26 H 0.97005 * 119.99877 * 0.23097 * 4 3 2 27 27 H 1.08002 * 119.88566 * 179.74802 * 5 3 2 28 28 H 1.08000 * 119.89339 * 179.97438 * 6 5 3 29 29 H 1.08000 * 119.99970 * 179.97438 * 7 6 5 30 30 H 0.96996 * 120.00138 * 359.97438 * 11 9 8 31 31 H 1.08997 * 109.46856 * 300.00364 * 12 11 9 32 32 H 1.09001 * 109.46833 * 59.99524 * 12 11 9 33 33 H 1.08992 * 109.47573 * 300.00001 * 13 12 11 34 34 H 1.08997 * 109.46874 * 60.00488 * 13 12 11 35 35 H 0.97001 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.1996 0.0000 4 7 1.5067 2.4110 0.0005 5 6 3.5926 1.1967 -0.0052 6 6 4.2859 0.0007 -0.0056 7 6 3.6028 -1.1983 -0.0002 8 6 2.2066 -1.2063 0.0054 9 6 1.4723 -2.4897 0.0106 10 8 0.2625 -2.4972 0.1286 11 7 2.1438 -3.6508 -0.1210 12 6 1.4163 -4.9224 -0.1153 13 6 2.4064 -6.0772 -0.2799 14 6 1.6581 -7.3853 -0.2733 15 1 0.5837 -7.3922 -0.1632 16 6 2.3450 -8.5731 -0.4079 17 7 3.6533 -8.5646 -0.5415 18 14 1.4174 -10.1945 -0.4005 19 1 -0.0352 -9.9330 -0.2370 20 1 1.6516 -10.9047 -1.6835 21 1 1.8985 -11.0348 0.7254 22 1 -0.3634 -0.1120 1.0215 23 1 -0.3634 0.9407 -0.4138 24 1 -0.3633 -0.8287 -0.6079 25 1 1.9934 3.2501 -0.0029 26 1 0.5367 2.4130 0.0043 27 1 4.1327 2.1319 -0.0093 28 1 5.3658 0.0046 -0.0101 29 1 4.1481 -2.1305 -0.0009 30 1 3.1087 -3.6446 -0.2195 31 1 0.8835 -5.0319 0.8293 32 1 0.7023 -4.9362 -0.9388 33 1 2.9388 -5.9675 -1.2246 34 1 3.1206 -6.0635 0.5434 35 1 4.1366 -9.4003 -0.6365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134198433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = -44.876602 kcal Electronic energy + Delta-G solvation = -17190.291826 eV Core-core repulsion = 14379.521389 eV Total energy + Delta-G solvation = -2810.770437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37046 -39.58413 -36.68743 -35.60715 -34.76644 -33.26323 -31.81303 -29.79143 -27.86054 -26.73659 -24.53478 -22.97028 -21.99232 -21.49724 -18.93177 -18.45170 -17.96424 -16.82905 -16.58893 -16.55140 -16.43892 -16.23078 -15.23936 -14.92843 -14.68400 -14.32006 -14.27580 -14.13116 -13.26702 -13.20087 -13.16522 -12.94026 -12.66419 -12.50836 -12.25135 -12.05241 -11.64434 -11.56563 -11.41792 -10.61958 -10.59580 -10.10203 -9.66275 -8.40431 -8.24009 -6.34563 -0.04402 0.61288 1.41471 1.42187 1.55596 1.94830 2.22709 2.45113 2.96161 3.04035 3.10662 3.75912 3.95409 4.10859 4.17843 4.47318 4.48479 4.54405 4.72603 4.80400 4.82086 4.84251 4.88315 5.22181 5.29909 5.34897 5.50493 5.57180 5.57399 5.60555 5.78690 5.90480 6.15859 6.56589 6.62229 6.78601 7.02250 7.24473 7.34748 8.88184 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.047630 B = 0.003989 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.720472 B = 7018.161119 C = 7575.012384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.126 4.126 3 C 0.204 3.796 4 N -0.866 5.866 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.151 4.151 8 C -0.111 4.111 9 C 0.543 3.457 10 O -0.573 6.573 11 N -0.713 5.713 12 C 0.141 3.859 13 C 0.022 3.978 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.411 0.589 26 H 0.403 0.597 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.408 0.592 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 22.454 0.739 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C 0.098 3.902 4 N -0.408 5.408 5 C -0.192 4.192 6 C -0.100 4.100 7 C -0.172 4.172 8 C -0.115 4.115 9 C 0.333 3.667 10 O -0.455 6.455 11 N -0.364 5.364 12 C 0.018 3.982 13 C -0.015 4.015 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.241 0.759 26 H 0.234 0.766 27 H 0.173 0.827 28 H 0.174 0.826 29 H 0.148 0.852 30 H 0.245 0.755 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.463 22.289 0.800 22.309 hybrid contribution -0.084 -0.971 -0.043 0.976 sum 0.379 21.318 0.756 21.335 Atomic orbital electron populations 1.20735 0.90625 1.02340 1.02275 1.19582 0.96622 0.91027 1.05956 1.17562 0.91830 0.86180 0.94609 1.42487 1.09515 1.04310 1.84497 1.21112 0.91479 0.99978 1.06675 1.21149 1.01227 0.90777 0.96839 1.21281 0.91963 1.00024 1.03901 1.19547 0.94457 0.91524 1.05928 1.18879 0.87012 0.84727 0.76095 1.90661 1.15255 1.87863 1.51762 1.46101 1.11719 1.05739 1.72827 1.21254 0.95146 0.81918 0.99907 1.19141 0.94253 0.91823 0.96308 1.21488 0.94197 0.92043 1.50740 0.92288 1.25883 0.95799 1.03137 0.94388 1.70069 1.07958 1.28245 1.50317 0.85374 0.78925 0.78679 0.77927 1.18982 1.20164 1.20174 0.92228 0.90709 0.91545 0.75852 0.76607 0.82731 0.82579 0.85174 0.75520 0.93390 0.93403 0.97298 0.97265 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 8.43 71.24 0.60 -2.17 16 2 C -0.13 -3.42 5.93 -19.47 -0.12 -3.53 16 3 C 0.20 4.10 6.73 38.17 0.26 4.36 16 4 N -0.87 -11.14 8.99 -51.44 -0.46 -11.61 16 5 C -0.17 -2.88 9.89 22.45 0.22 -2.65 16 6 C -0.08 -1.52 10.02 22.21 0.22 -1.29 16 7 C -0.15 -3.72 9.52 22.55 0.21 -3.51 16 8 C -0.11 -3.38 5.87 -20.10 -0.12 -3.50 16 9 C 0.54 20.50 7.70 86.79 0.67 21.17 16 10 O -0.57 -24.77 13.35 -3.90 -0.05 -24.82 16 11 N -0.71 -27.06 5.50 -465.96 -2.57 -29.63 16 12 C 0.14 6.36 5.61 86.38 0.48 6.84 16 13 C 0.02 1.15 5.09 29.85 0.15 1.30 16 14 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.38 5.46 84.65 0.46 0.84 16 17 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 18 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.07 1.45 6.24 -2.39 -0.01 1.44 16 24 H 0.07 2.20 5.86 -2.38 -0.01 2.19 16 25 H 0.41 2.99 8.84 -92.71 -0.82 2.17 16 26 H 0.40 4.66 6.69 -92.70 -0.62 4.04 16 27 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.13 2.96 6.45 -2.91 -0.02 2.94 16 30 H 0.41 13.55 6.54 -92.71 -0.61 12.94 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -69.73 294.85 1.60 -68.12 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.91 Total: 19.29 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 3.28 Total: -12.95 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -2.74 Total: -95.73 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.73 1.60 -68.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134198433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.245 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds