Wall clock time and date at job start Mon Mar 30 2020 03:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38229 * 119.95448 * 2 1 4 4 C 1.38086 * 120.15415 * 179.76628 * 3 2 1 5 5 C 1.39127 * 120.06472 * 0.50950 * 4 3 2 6 6 N 1.39514 * 120.04613 * 179.72010 * 5 4 3 7 7 C 1.34774 * 120.00256 * 324.90178 * 6 5 4 8 8 O 1.21741 * 119.99819 * 4.58664 * 7 6 5 9 9 C 1.46155 * 120.00112 * 184.59633 * 7 6 5 10 10 H 1.07998 * 120.00297 * 5.02000 * 9 7 6 11 11 C 1.40123 * 120.00017 * 185.03154 * 9 7 6 12 12 N 1.30635 * 119.99986 * 354.95543 * 11 9 7 13 13 Si 1.86801 * 120.00189 * 174.96182 * 11 9 7 14 14 H 1.48498 * 109.47308 * 94.99483 * 13 11 9 15 15 H 1.48497 * 109.47306 * 214.99626 * 13 11 9 16 16 H 1.48495 * 109.46986 * 334.99848 * 13 11 9 17 17 C 1.38865 * 119.90868 * 359.74832 * 5 4 3 18 18 C 1.38748 * 119.84673 * 359.97438 * 17 5 4 19 19 N 1.39657 * 120.02953 * 180.02562 * 18 17 5 20 20 C 1.46897 * 110.99959 * 299.97653 * 19 18 17 21 21 C 1.46898 * 111.00238 * 63.93302 * 19 18 17 22 22 H 1.09001 * 109.46531 * 269.72518 * 1 2 3 23 23 H 1.08993 * 109.46770 * 149.72848 * 1 2 3 24 24 H 1.09000 * 109.47214 * 29.72420 * 1 2 3 25 25 H 1.08001 * 119.92192 * 0.02562 * 3 2 1 26 26 H 1.07997 * 119.97123 * 180.23164 * 4 3 2 27 27 H 0.97001 * 119.99737 * 144.90035 * 6 5 4 28 28 H 0.97002 * 120.00017 * 179.97438 * 12 11 9 29 29 H 1.08002 * 120.07400 * 180.02562 * 17 5 4 30 30 H 1.09006 * 109.47168 * 60.00428 * 20 19 18 31 31 H 1.09000 * 109.46860 * 180.02562 * 20 19 18 32 32 H 1.08999 * 109.47390 * 300.00391 * 20 19 18 33 33 H 1.09006 * 109.47037 * 59.99796 * 21 19 18 34 34 H 1.08996 * 109.47170 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.47228 * 299.99810 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1976 0.0000 4 6 3.5781 1.2025 0.0049 5 6 4.2793 0.0008 -0.0009 6 7 5.6744 0.0062 -0.0019 7 6 6.3442 0.9666 -0.6692 8 8 5.7346 1.8764 -1.2011 9 6 7.8024 0.9159 -0.7546 10 1 8.3376 0.0679 -0.3537 11 6 8.5059 1.9677 -1.3565 12 7 7.8556 2.9457 -1.9285 13 14 10.3739 1.9714 -1.3411 14 1 10.8805 1.3795 -2.6053 15 1 10.8652 3.3671 -1.2163 16 1 10.8609 1.1703 -0.1895 17 6 3.5886 -1.2039 -0.0063 18 6 2.2011 -1.2044 -0.0054 19 7 1.5027 -2.4137 -0.0102 20 6 1.8320 -3.2070 -1.2019 21 6 1.7621 -3.1765 1.2181 22 1 -0.3632 -0.0049 1.0277 23 1 -0.3632 -0.8875 -0.5180 24 1 -0.3634 0.8924 -0.5095 25 1 1.6552 2.1318 0.0004 26 1 4.1143 2.1399 0.0086 27 1 6.1624 -0.6814 0.4778 28 1 8.3426 3.6739 -2.3448 29 1 4.1303 -2.1382 -0.0104 30 1 2.9008 -3.4207 -1.2122 31 1 1.2741 -4.1432 -1.1807 32 1 1.5651 -2.6456 -2.0973 33 1 1.4443 -2.5928 2.0822 34 1 1.2057 -4.1133 1.1884 35 1 2.8283 -3.3891 1.2955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135465515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:32 Heat of formation + Delta-G solvation = -28.245881 kcal Electronic energy + Delta-G solvation = -17763.736462 eV Core-core repulsion = 14953.687187 eV Total energy + Delta-G solvation = -2810.049275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23039 -39.58060 -37.27758 -35.44899 -34.59962 -32.25742 -30.83071 -28.82226 -28.45914 -26.87426 -25.30167 -23.01337 -22.60439 -20.92876 -19.52950 -18.09010 -17.63000 -16.65158 -16.35388 -16.04835 -15.91032 -15.78264 -15.13525 -14.75044 -14.32745 -14.27306 -14.12150 -13.33691 -13.25703 -13.21120 -12.95480 -12.85862 -12.73784 -12.63241 -12.55919 -12.43986 -12.05468 -11.94244 -11.03527 -10.67337 -9.98030 -9.61305 -9.48140 -8.67122 -8.39464 -6.97329 0.41445 0.49261 1.37753 1.39077 1.55679 2.19102 2.33957 2.78163 2.89699 3.01301 3.53139 3.96072 4.19894 4.26004 4.39595 4.43967 4.49535 4.65110 4.65644 4.79976 4.81447 4.98147 4.99362 5.00428 5.02908 5.22764 5.27027 5.46968 5.52659 5.70270 5.79000 5.87471 5.96088 6.12265 6.25503 6.51958 6.75195 7.30391 8.32312 8.54215 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.037835 B = 0.005202 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.879862 B = 5380.985426 C = 5854.982400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.102 4.102 3 C -0.100 4.100 4 C -0.155 4.155 5 C 0.159 3.841 6 N -0.695 5.695 7 C 0.529 3.471 8 O -0.606 6.606 9 C -0.567 4.567 10 H 0.092 0.908 11 C 0.030 3.970 12 N -0.813 5.813 13 Si 1.002 2.998 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.247 1.247 17 C -0.190 4.190 18 C 0.101 3.899 19 N -0.503 5.503 20 C 0.026 3.974 21 C 0.027 3.973 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.405 0.595 28 H 0.278 0.722 29 H 0.126 0.874 30 H 0.023 0.977 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -11.182 5.201 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.119 4.119 4 C -0.176 4.176 5 C 0.062 3.938 6 N -0.339 5.339 7 C 0.336 3.664 8 O -0.491 6.491 9 C -0.603 4.603 10 H 0.110 0.890 11 C -0.186 4.186 12 N -0.442 5.442 13 Si 0.821 3.179 14 H -0.186 1.186 15 H -0.195 1.195 16 H -0.171 1.171 17 C -0.213 4.213 18 C 0.007 3.993 19 N -0.224 5.224 20 C -0.121 4.121 21 C -0.119 4.119 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.119 0.881 27 H 0.240 0.760 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.042 0.958 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.604 -10.293 4.689 15.504 hybrid contribution 2.175 -0.037 0.037 2.176 sum -8.429 -10.329 4.727 14.145 Atomic orbital electron populations 1.20534 0.88504 1.02848 1.02583 1.19980 0.97780 0.90609 1.02065 1.21048 0.92469 0.98701 0.99634 1.21346 0.95122 0.97544 1.03563 1.18036 0.84258 0.93948 0.97598 1.43668 1.03441 1.32421 1.54377 1.18757 0.89293 0.80508 0.77873 1.90577 1.70223 1.36924 1.51406 1.21389 0.89760 1.07914 1.41244 0.89032 1.27016 1.06660 0.93365 0.91558 1.70148 1.39848 1.08545 1.25683 0.84940 0.74190 0.78736 0.80070 1.18616 1.19548 1.17056 1.21367 0.95290 0.96068 1.08610 1.18451 0.88882 0.91759 1.00217 1.59745 1.55599 1.02784 1.04283 1.22508 0.99346 0.98370 0.91887 1.22506 0.99788 0.98664 0.90936 0.90771 0.90463 0.91637 0.84426 0.88106 0.76042 0.91170 0.85604 0.95788 0.88366 0.92075 0.91341 0.88630 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 9.76 71.24 0.70 -1.38 16 2 C -0.10 -3.25 5.90 -19.68 -0.12 -3.36 16 3 C -0.10 -3.65 9.68 22.23 0.22 -3.44 16 4 C -0.15 -7.11 8.69 22.45 0.20 -6.91 16 5 C 0.16 7.07 6.29 38.28 0.24 7.31 16 6 N -0.69 -33.06 5.31 -307.61 -1.63 -34.70 16 7 C 0.53 30.97 7.57 86.30 0.65 31.62 16 8 O -0.61 -40.26 12.46 -4.48 -0.06 -40.31 16 9 C -0.57 -31.86 9.53 24.78 0.24 -31.62 16 10 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 11 C 0.03 1.67 5.50 85.33 0.47 2.14 16 12 N -0.81 -49.08 11.84 21.85 0.26 -48.82 16 13 Si 1.00 40.07 29.56 68.60 2.03 42.10 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 15 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 16 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 17 C -0.19 -6.84 8.49 22.54 0.19 -6.65 16 18 C 0.10 3.20 4.71 38.20 0.18 3.38 16 19 N -0.50 -12.40 3.93 -745.18 -2.93 -15.32 16 20 C 0.03 0.56 9.34 127.69 1.19 1.75 16 21 C 0.03 0.55 9.38 127.69 1.20 1.74 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 23 H 0.08 1.75 7.45 -2.39 -0.02 1.73 16 24 H 0.06 1.40 8.08 -2.39 -0.02 1.38 16 25 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 26 H 0.10 5.46 6.21 -2.91 -0.02 5.44 16 27 H 0.40 16.37 8.80 -92.71 -0.82 15.55 16 28 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 29 H 0.13 4.08 7.01 -2.91 -0.02 4.06 16 30 H 0.02 0.56 7.12 -2.38 -0.02 0.54 16 31 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.10 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.03 0.54 7.34 -2.39 -0.02 0.53 16 Total: -1.00 -73.58 296.16 3.30 -70.28 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.28 Total: 32.20 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.35 Total: -5.43 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -4.30 Total: -98.84 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.06 Total: -40.31 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -73.58 3.30 -70.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135465515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.031 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds