Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47138 * 2 1 4 4 C 1.37886 * 120.34617 * 95.01940 * 3 2 1 5 5 C 1.39840 * 119.26528 * 180.17804 * 4 3 2 6 6 O 1.22118 * 119.71694 * 180.14855 * 5 4 3 7 7 N 1.34389 * 120.69022 * 0.22573 * 5 4 3 8 8 C 1.36707 * 120.99675 * 359.19699 * 7 5 4 9 9 C 1.38514 * 119.58417 * 0.93753 * 8 7 5 10 10 C 1.50702 * 119.92666 * 179.47910 * 9 8 7 11 11 C 1.50700 * 109.47057 * 95.00055 * 10 9 8 12 12 H 1.07998 * 120.00241 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99597 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99686 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00400 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47064 * 89.99904 * 15 13 11 17 17 H 1.48502 * 109.47162 * 210.00340 * 15 13 11 18 18 H 1.48507 * 109.46836 * 330.00078 * 15 13 11 19 19 N 1.38191 * 111.66159 * 180.89061 * 8 7 5 20 20 C 1.47978 * 107.19055 * 341.78862 * 19 8 7 21 21 C 1.47609 * 130.41756 * 179.30988 * 7 5 4 22 22 H 1.08996 * 109.46843 * 60.00342 * 1 2 3 23 23 H 1.09008 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47489 * 300.00255 * 1 2 3 25 25 H 1.09003 * 109.47358 * 239.99600 * 2 1 3 26 26 H 1.08996 * 109.46843 * 119.99658 * 2 1 3 27 27 H 1.07997 * 120.36891 * 0.20568 * 4 3 2 28 28 H 1.09009 * 109.46885 * 214.99642 * 10 9 8 29 29 H 1.08997 * 109.47247 * 334.99591 * 10 9 8 30 30 H 0.97005 * 120.00149 * 179.97438 * 14 13 11 31 31 H 1.00901 * 111.00007 * 103.15500 * 19 8 7 32 32 H 1.08997 * 110.94260 * 268.41442 * 20 19 8 33 33 H 1.09001 * 110.97002 * 144.74808 * 20 19 8 34 34 H 1.09002 * 110.72469 * 77.29926 * 21 7 5 35 35 H 1.09003 * 110.71856 * 314.20198 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3627 2.0429 1.1854 5 6 2.8230 3.3631 1.1594 6 8 3.1205 3.9211 2.2041 7 7 2.9403 4.0259 -0.0038 8 6 2.6293 3.4243 -1.1913 9 6 2.1680 2.1183 -1.1961 10 6 1.8117 1.4515 -2.4998 11 6 2.9919 0.6568 -2.9965 12 1 3.9081 0.6362 -2.4251 13 6 2.9019 -0.0440 -4.1805 14 7 3.9319 -0.7371 -4.6142 15 14 1.3170 -0.0090 -5.1685 16 1 1.3576 1.1223 -6.1294 17 1 1.1692 -1.2856 -5.9127 18 1 0.1640 0.1640 -4.2486 19 7 2.8384 4.2718 -2.2626 20 6 2.8985 5.6493 -1.7253 21 6 3.3830 5.4071 -0.2778 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2675 1.5162 2.1234 28 1 0.9631 0.7846 -2.3468 29 1 1.5490 2.2108 -3.2363 30 1 3.8686 -1.2305 -5.4470 31 1 3.6903 4.0361 -2.7493 32 1 1.9125 6.1139 -1.7333 33 1 3.6162 6.2535 -2.2802 34 1 4.4687 5.4835 -0.2166 35 1 2.9092 6.1076 0.4099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259641549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = 3.844271 kcal Electronic energy + Delta-G solvation = -18456.771541 eV Core-core repulsion = 15648.113799 eV Total energy + Delta-G solvation = -2808.657741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53774 -37.90570 -36.85204 -33.39592 -32.79360 -31.78565 -30.08936 -28.94131 -26.42515 -24.07589 -23.14884 -22.57168 -20.96459 -20.19261 -17.42627 -17.28170 -16.75770 -15.92633 -15.54566 -14.80426 -14.36932 -14.32411 -13.69485 -13.60549 -13.43800 -13.14716 -12.69756 -12.51270 -12.10330 -11.93916 -11.77765 -11.55967 -11.17508 -10.90840 -10.63101 -10.39344 -10.21127 -10.05367 -9.58944 -9.45289 -9.20702 -8.96125 -8.60888 -6.98125 -6.11285 -4.10197 1.21177 2.43689 2.87744 3.26672 3.35240 3.37656 3.76053 4.05957 4.38657 4.42551 4.74013 4.93168 5.18777 5.21289 5.25629 5.44782 5.56543 5.58878 5.66298 5.74925 5.83041 5.98145 6.00247 6.29345 6.45594 6.52161 6.63991 6.75768 6.87168 7.02723 7.07830 7.26995 7.39596 7.59754 7.66871 8.45070 8.51370 8.93190 9.49891 11.01298 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.008691 C = 0.007015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.742796 B = 3220.841394 C = 3990.327748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C 0.060 3.940 4 C -0.286 4.286 5 C 0.530 3.470 6 O -0.588 6.588 7 N -0.528 5.528 8 C 0.301 3.699 9 C -0.129 4.129 10 C 0.034 3.966 11 C -0.512 4.512 12 H 0.071 0.929 13 C 0.072 3.928 14 N -0.900 5.900 15 Si 0.874 3.126 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.264 1.264 19 N -0.606 5.606 20 C 0.038 3.962 21 C 0.061 3.939 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.377 0.623 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 8.478 4.276 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C 0.055 3.945 4 C -0.308 4.308 5 C 0.336 3.664 6 O -0.475 6.475 7 N -0.247 5.247 8 C 0.098 3.902 9 C -0.136 4.136 10 C -0.004 4.004 11 C -0.550 4.550 12 H 0.089 0.911 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.188 1.188 19 N -0.240 5.240 20 C -0.090 4.090 21 C -0.062 4.062 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.207 0.793 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.792 8.803 4.580 11.019 hybrid contribution 0.195 0.060 -0.304 0.366 sum -4.597 8.863 4.276 10.861 Atomic orbital electron populations 1.21707 0.94664 1.01691 1.01945 1.20748 0.96043 0.92074 1.04649 1.20138 0.87765 0.95341 0.91252 1.21844 1.15013 0.94735 0.99223 1.16573 0.80961 0.87556 0.81294 1.90881 1.56075 1.69960 1.30541 1.47237 1.55287 1.13694 1.08450 1.20255 0.96647 0.92192 0.81067 1.19224 1.06844 0.89767 0.97770 1.18557 0.97724 0.95431 0.88647 1.20941 0.98811 1.28644 1.06600 0.91136 1.24963 0.96054 0.94821 0.97163 1.69901 1.30174 1.31668 1.22069 0.86857 0.84786 0.77503 0.80691 1.20213 1.21465 1.18804 1.58237 1.42306 1.01249 1.22163 1.23438 1.03683 0.90200 0.91710 1.23090 1.01362 0.83168 0.98580 0.92035 0.92322 0.93137 0.87490 0.91172 0.83913 0.94905 0.95181 0.92653 0.79277 0.88331 0.87842 0.89489 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.73 37.16 0.36 -1.72 16 2 C -0.10 -1.64 5.40 -27.88 -0.15 -1.79 16 3 C 0.06 1.11 5.15 -104.42 -0.54 0.57 16 4 C -0.29 -5.35 9.67 -39.11 -0.38 -5.73 16 5 C 0.53 10.63 7.56 -15.83 -0.12 10.51 16 6 O -0.59 -13.26 17.63 4.81 0.08 -13.17 16 7 N -0.53 -9.22 3.12 -116.77 -0.36 -9.59 16 8 C 0.30 5.39 7.08 -152.21 -1.08 4.31 16 9 C -0.13 -2.56 5.10 -104.19 -0.53 -3.09 16 10 C 0.03 0.75 3.46 -29.03 -0.10 0.65 16 11 C -0.51 -13.20 8.90 -34.44 -0.31 -13.50 16 12 H 0.07 2.02 7.98 -52.49 -0.42 1.60 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -26.04 13.96 55.43 0.77 -25.27 16 15 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 19 N -0.61 -8.99 6.78 -57.88 -0.39 -9.38 16 20 C 0.04 0.40 7.88 -2.41 -0.02 0.38 16 21 C 0.06 0.77 7.56 -2.62 -0.02 0.75 16 22 H 0.06 0.95 6.83 -51.93 -0.35 0.60 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.11 2.05 6.50 -51.93 -0.34 1.71 16 26 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 27 H 0.14 2.44 8.06 -52.49 -0.42 2.01 16 28 H 0.03 0.71 4.75 -51.92 -0.25 0.47 16 29 H 0.03 0.66 7.19 -51.93 -0.37 0.29 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.38 5.39 8.84 -39.29 -0.35 5.04 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -32.27 288.04 -7.83 -40.09 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.62 Total: 4.24 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.98 Total: -6.83 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.02 Total: -44.24 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.27 -7.83 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.939 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds