Wall clock time and date at job start Mon Mar 30 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 H 1.09000 * 109.47019 * 305.56111 * 3 2 1 5 5 C 1.50700 * 109.46999 * 65.55999 * 3 2 1 6 6 H 1.07994 * 119.99972 * 28.12033 * 5 3 2 7 7 C 1.37877 * 119.99788 * 208.11372 * 5 3 2 8 8 N 1.31515 * 120.00348 * 6.11115 * 7 5 3 9 9 Si 1.86807 * 120.00072 * 186.10444 * 7 5 3 10 10 H 1.48501 * 109.46658 * 90.00194 * 9 7 5 11 11 H 1.48493 * 109.47243 * 210.00508 * 9 7 5 12 12 H 1.48499 * 109.46842 * 330.01114 * 9 7 5 13 13 C 1.52999 * 109.47189 * 185.56585 * 3 2 1 14 14 N 1.46493 * 109.47342 * 64.99986 * 13 3 2 15 15 C 1.34780 * 120.00204 * 179.72969 * 14 13 3 16 16 O 1.21521 * 119.99455 * 0.27058 * 15 14 13 17 17 C 1.48139 * 120.00407 * 180.27238 * 15 14 13 18 18 C 1.39820 * 120.92090 * 359.71798 * 17 15 14 19 19 C 1.38154 * 119.00140 * 179.79606 * 18 17 15 20 20 N 1.31821 * 120.89379 * 0.48949 * 19 18 17 21 21 C 1.31810 * 122.04700 * 359.73476 * 20 19 18 22 22 C 1.38145 * 120.89900 * 0.02874 * 21 20 19 23 23 H 1.09000 * 109.47182 * 174.04527 * 1 2 3 24 24 H 1.08997 * 109.47106 * 294.04646 * 1 2 3 25 25 H 1.09000 * 109.46911 * 54.04881 * 1 2 3 26 26 H 1.09005 * 109.47173 * 239.99980 * 2 1 3 27 27 H 1.08996 * 109.47049 * 119.99963 * 2 1 3 28 28 H 0.97002 * 120.00300 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46898 * 304.99732 * 13 3 2 30 30 H 1.08998 * 109.46842 * 185.00416 * 13 3 2 31 31 H 0.96999 * 119.99883 * 359.97438 * 14 13 3 32 32 H 1.08002 * 120.50054 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.55039 * 180.22556 * 19 18 17 34 34 H 1.08007 * 119.54930 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.49903 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 1.6532 2.1120 1.2935 6 1 1.5265 1.5228 2.1897 7 6 1.4613 3.4768 1.3328 8 7 1.4972 4.1782 0.2209 9 14 1.1501 4.3296 2.9654 10 1 2.4452 4.7446 3.5618 11 1 0.3005 5.5272 2.7443 12 1 0.4574 3.3947 3.8881 13 6 3.5636 1.4447 -0.1399 14 7 3.9346 0.9025 -1.4493 15 6 5.2334 0.8128 -1.7981 16 8 6.0968 1.1770 -1.0245 17 6 5.6083 0.2701 -3.1245 18 6 4.6310 -0.1600 -4.0273 19 6 5.0250 -0.6554 -5.2553 20 7 6.3013 -0.7341 -5.5755 21 6 7.2542 -0.3440 -4.7525 22 6 6.9495 0.1684 -3.5063 23 1 -0.3633 -1.0221 -0.1066 24 1 -0.3633 0.4187 0.9384 25 1 -0.3633 0.6033 -0.8319 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3617 5.1383 0.2485 29 1 4.0015 0.8290 0.6457 30 1 3.9351 2.4656 -0.0508 31 1 3.2454 0.6114 -2.0666 32 1 3.5838 -0.1031 -3.7696 33 1 4.2774 -0.9867 -5.9607 34 1 8.2874 -0.4270 -5.0563 35 1 7.7355 0.4857 -2.8370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259698786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:07 Heat of formation + Delta-G solvation = -19.910550 kcal Electronic energy + Delta-G solvation = -17470.007583 eV Core-core repulsion = 14660.319755 eV Total energy + Delta-G solvation = -2809.687828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44955 -38.72569 -35.95956 -33.47557 -32.46414 -31.81714 -31.26513 -28.28930 -25.46733 -24.07897 -23.45348 -22.42752 -20.42083 -19.58338 -18.10053 -16.60900 -16.35636 -15.72675 -15.18412 -14.88792 -14.79366 -14.54947 -13.84667 -13.80323 -13.47789 -13.22980 -12.76200 -12.39938 -12.07982 -11.75707 -11.11283 -11.07310 -10.96852 -10.47716 -10.27587 -10.03035 -9.90465 -9.87191 -9.51292 -9.30386 -9.27340 -9.06962 -8.56069 -8.33356 -6.14776 -4.17801 0.73471 0.99512 3.13593 3.25860 3.33870 3.35701 3.56766 3.88900 4.30226 4.36280 4.64578 4.81433 4.95481 5.02449 5.20256 5.41313 5.63790 5.77544 5.92041 6.00742 6.03371 6.21601 6.49245 6.51999 6.58896 6.71052 6.86509 6.89594 6.96036 7.12015 7.41975 7.69462 7.78227 7.80671 7.99748 8.26226 8.59042 8.91264 9.47725 10.94654 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.031405 B = 0.005033 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.357346 B = 5562.430797 C = 6025.442993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.028 3.972 4 H 0.060 0.940 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.126 3.874 14 N -0.707 5.707 15 C 0.542 3.458 16 O -0.541 6.541 17 C -0.078 4.078 18 C -0.143 4.143 19 C 0.094 3.906 20 N -0.477 5.477 21 C 0.092 3.908 22 C -0.120 4.120 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.394 0.606 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -8.460 -8.890 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.009 3.991 4 H 0.078 0.922 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.004 3.996 14 N -0.356 5.356 15 C 0.327 3.673 16 O -0.419 6.419 17 C -0.089 4.089 18 C -0.164 4.164 19 C -0.063 4.063 20 N -0.187 5.187 21 C -0.065 4.065 22 C -0.141 4.141 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.158 0.842 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.243 -8.320 -9.162 13.441 hybrid contribution -0.726 0.846 1.408 1.796 sum 4.517 -7.474 -7.754 11.679 Atomic orbital electron populations 1.21594 0.96620 0.98429 1.02466 1.21601 0.95637 0.99054 0.98671 1.19132 0.88755 0.91533 0.99705 0.92224 1.20934 1.47099 0.92056 0.94759 0.92364 1.25013 0.94526 0.97781 0.96300 1.69920 1.49179 1.07171 1.26185 0.86616 0.78294 0.79175 0.84117 1.20487 1.21250 1.19779 1.22143 0.99559 0.97903 0.79948 1.46422 1.05945 1.62752 1.20510 1.18232 0.83787 0.79467 0.85816 1.90751 1.49349 1.49437 1.52368 1.20678 0.94513 0.98457 0.95254 1.22430 1.00577 0.98476 0.94875 1.22737 0.92968 0.95869 0.94739 1.67544 1.01429 1.14692 1.35002 1.22769 0.99102 0.94752 0.89879 1.22340 0.96452 0.97623 0.97654 0.95328 0.92058 0.93536 0.95254 0.93571 0.92742 0.93155 0.91475 0.77123 0.84167 0.82209 0.82217 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.63 37.16 0.36 -2.05 16 2 C -0.11 -2.12 5.32 -26.73 -0.14 -2.26 16 3 C 0.03 0.63 1.87 -91.77 -0.17 0.45 16 4 H 0.06 1.47 7.43 -51.93 -0.39 1.09 16 5 C -0.51 -13.03 7.42 -34.44 -0.26 -13.29 16 6 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 8 N -0.89 -24.54 12.87 55.43 0.71 -23.83 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.13 2.77 5.05 -4.05 -0.02 2.75 16 14 N -0.71 -12.78 5.19 -61.16 -0.32 -13.10 16 15 C 0.54 9.90 7.80 -12.19 -0.10 9.80 16 16 O -0.54 -11.79 16.45 5.35 0.09 -11.71 16 17 C -0.08 -1.13 5.91 -104.65 -0.62 -1.74 16 18 C -0.14 -1.69 9.62 -39.02 -0.38 -2.06 16 19 C 0.09 1.02 11.17 -17.59 -0.20 0.82 16 20 N -0.48 -5.81 10.34 -13.30 -0.14 -5.94 16 21 C 0.09 1.03 11.17 -17.60 -0.20 0.83 16 22 C -0.12 -1.55 9.68 -39.03 -0.38 -1.93 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 1.19 7.59 -51.93 -0.39 0.80 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.48 7.06 -51.93 -0.37 0.11 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.39 6.04 5.80 -40.82 -0.24 5.80 16 32 H 0.14 1.38 6.54 -52.49 -0.34 1.03 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.15 1.83 7.74 -52.48 -0.41 1.43 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -30.08 300.91 -6.97 -37.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.64 Total: 4.37 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.19 Total: -7.01 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.26 Total: -42.87 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.08 -6.97 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.135 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds