Wall clock time and date at job start Mon Mar 30 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 H 1.09000 * 109.47019 * 305.56111 * 3 2 1 5 5 C 1.50700 * 109.46999 * 65.55999 * 3 2 1 6 6 H 1.07994 * 119.99972 * 28.12033 * 5 3 2 7 7 C 1.37877 * 119.99788 * 208.11372 * 5 3 2 8 8 N 1.31515 * 120.00348 * 6.11115 * 7 5 3 9 9 Si 1.86807 * 120.00072 * 186.10444 * 7 5 3 10 10 H 1.48501 * 109.46658 * 90.00194 * 9 7 5 11 11 H 1.48493 * 109.47243 * 210.00508 * 9 7 5 12 12 H 1.48499 * 109.46842 * 330.01114 * 9 7 5 13 13 C 1.52999 * 109.47189 * 185.56585 * 3 2 1 14 14 N 1.46493 * 109.47342 * 64.99986 * 13 3 2 15 15 C 1.34780 * 120.00204 * 179.72969 * 14 13 3 16 16 O 1.21521 * 119.99455 * 0.27058 * 15 14 13 17 17 C 1.48139 * 120.00407 * 180.27238 * 15 14 13 18 18 C 1.39820 * 120.92090 * 359.71798 * 17 15 14 19 19 C 1.38154 * 119.00140 * 179.79606 * 18 17 15 20 20 N 1.31821 * 120.89379 * 0.48949 * 19 18 17 21 21 C 1.31810 * 122.04700 * 359.73476 * 20 19 18 22 22 C 1.38145 * 120.89900 * 0.02874 * 21 20 19 23 23 H 1.09000 * 109.47182 * 174.04527 * 1 2 3 24 24 H 1.08997 * 109.47106 * 294.04646 * 1 2 3 25 25 H 1.09000 * 109.46911 * 54.04881 * 1 2 3 26 26 H 1.09005 * 109.47173 * 239.99980 * 2 1 3 27 27 H 1.08996 * 109.47049 * 119.99963 * 2 1 3 28 28 H 0.97002 * 120.00300 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46898 * 304.99732 * 13 3 2 30 30 H 1.08998 * 109.46842 * 185.00416 * 13 3 2 31 31 H 0.96999 * 119.99883 * 359.97438 * 14 13 3 32 32 H 1.08002 * 120.50054 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.55039 * 180.22556 * 19 18 17 34 34 H 1.08007 * 119.54930 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.49903 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 1.6532 2.1120 1.2935 6 1 1.5265 1.5228 2.1897 7 6 1.4613 3.4768 1.3328 8 7 1.4972 4.1782 0.2209 9 14 1.1501 4.3296 2.9654 10 1 2.4452 4.7446 3.5618 11 1 0.3005 5.5272 2.7443 12 1 0.4574 3.3947 3.8881 13 6 3.5636 1.4447 -0.1399 14 7 3.9346 0.9025 -1.4493 15 6 5.2334 0.8128 -1.7981 16 8 6.0968 1.1770 -1.0245 17 6 5.6083 0.2701 -3.1245 18 6 4.6310 -0.1600 -4.0273 19 6 5.0250 -0.6554 -5.2553 20 7 6.3013 -0.7341 -5.5755 21 6 7.2542 -0.3440 -4.7525 22 6 6.9495 0.1684 -3.5063 23 1 -0.3633 -1.0221 -0.1066 24 1 -0.3633 0.4187 0.9384 25 1 -0.3633 0.6033 -0.8319 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3617 5.1383 0.2485 29 1 4.0015 0.8290 0.6457 30 1 3.9351 2.4656 -0.0508 31 1 3.2454 0.6114 -2.0666 32 1 3.5838 -0.1031 -3.7696 33 1 4.2774 -0.9867 -5.9607 34 1 8.2874 -0.4270 -5.0563 35 1 7.7355 0.4857 -2.8370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259698786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:07 Heat of formation + Delta-G solvation = -39.279882 kcal Electronic energy + Delta-G solvation = -17470.847500 eV Core-core repulsion = 14660.319755 eV Total energy + Delta-G solvation = -2810.527745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57054 -40.07004 -37.67628 -35.08240 -33.84954 -33.39522 -32.20381 -29.93458 -27.17433 -25.47577 -24.48492 -23.89030 -21.81168 -21.29604 -19.42068 -18.39629 -17.60170 -16.69214 -16.55545 -16.37872 -16.32377 -16.13156 -15.20330 -14.86873 -14.82891 -14.53232 -14.39736 -13.99542 -13.85144 -12.95614 -12.85014 -12.73444 -12.65660 -12.25548 -11.95373 -11.59920 -11.42490 -11.02726 -10.98832 -10.96174 -10.57232 -10.50865 -10.18712 -10.00689 -8.17791 -6.24836 -0.33845 0.10670 1.39650 1.43243 1.50806 1.83347 2.13331 2.43040 2.86524 3.16808 3.51833 3.55267 3.83386 3.96647 4.07448 4.31267 4.48833 4.52479 4.60709 4.75947 4.81243 4.82380 4.93222 5.08304 5.10953 5.21648 5.30217 5.38414 5.57204 5.62051 5.63228 5.80341 5.88962 6.32835 6.52257 6.89336 6.90892 7.14164 7.43211 8.91339 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.031405 B = 0.005033 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.357346 B = 5562.430797 C = 6025.442993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C 0.031 3.969 4 H 0.037 0.963 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.919 5.919 9 Si 0.944 3.056 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.144 3.856 14 N -0.699 5.699 15 C 0.542 3.458 16 O -0.584 6.584 17 C -0.100 4.100 18 C -0.138 4.138 19 C 0.099 3.901 20 N -0.488 5.488 21 C 0.098 3.902 22 C -0.129 4.129 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.261 0.739 29 H 0.042 0.958 30 H 0.024 0.976 31 H 0.410 0.590 32 H 0.160 0.840 33 H 0.196 0.804 34 H 0.192 0.808 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -10.141 -10.256 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 C 0.011 3.989 4 H 0.055 0.945 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.771 3.229 10 H -0.208 1.208 11 H -0.210 1.210 12 H -0.188 1.188 13 C 0.021 3.979 14 N -0.350 5.350 15 C 0.329 3.671 16 O -0.466 6.466 17 C -0.111 4.111 18 C -0.158 4.158 19 C -0.058 4.058 20 N -0.197 5.197 21 C -0.058 4.058 22 C -0.150 4.150 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.247 0.753 32 H 0.178 0.822 33 H 0.213 0.787 34 H 0.209 0.791 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.843 -10.028 -10.547 15.338 hybrid contribution -0.572 1.315 1.764 2.274 sum 4.271 -8.713 -8.782 13.088 Atomic orbital electron populations 1.21541 0.95692 1.00311 1.01140 1.21520 0.96416 0.96453 1.00044 1.19038 0.88732 0.93582 0.97505 0.94491 1.21290 1.46167 0.92333 0.95868 0.92702 1.25689 0.94817 0.98620 0.98936 1.70023 1.50760 1.07168 1.27833 0.85756 0.77933 0.78329 0.80916 1.20798 1.21028 1.18818 1.21593 0.99045 0.95501 0.81783 1.46135 1.06740 1.62613 1.19481 1.18812 0.82993 0.78353 0.86935 1.90720 1.50405 1.51317 1.54139 1.20431 0.96051 1.00761 0.93850 1.22642 1.00944 0.97576 0.94632 1.23307 0.93294 0.94464 0.94686 1.67654 1.02127 1.14759 1.35194 1.23201 1.00512 0.93334 0.88733 1.22442 0.95824 0.98125 0.98563 0.91939 0.94167 0.93960 0.92239 0.93751 0.92981 0.93951 0.95795 0.75296 0.82241 0.78703 0.79140 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.63 71.98 0.69 -3.74 16 2 C -0.11 -3.88 5.32 30.59 0.16 -3.72 16 3 C 0.03 1.39 1.87 -11.54 -0.02 1.36 16 4 H 0.04 1.85 7.43 -2.39 -0.02 1.84 16 5 C -0.52 -26.84 7.42 25.60 0.19 -26.65 16 6 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 7 C 0.02 1.02 5.45 84.65 0.46 1.48 16 8 N -0.92 -52.06 12.87 21.45 0.28 -51.79 16 9 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.14 6.50 5.05 86.38 0.44 6.94 16 14 N -0.70 -25.26 5.19 -465.70 -2.42 -27.67 16 15 C 0.54 19.96 7.80 86.87 0.68 20.63 16 16 O -0.58 -26.37 16.45 -3.78 -0.06 -26.44 16 17 C -0.10 -2.79 5.91 -19.88 -0.12 -2.91 16 18 C -0.14 -2.89 9.62 22.63 0.22 -2.68 16 19 C 0.10 1.81 11.17 84.67 0.95 2.75 16 20 N -0.49 -10.34 10.34 -196.00 -2.03 -12.37 16 21 C 0.10 1.97 11.17 84.67 0.95 2.92 16 22 C -0.13 -3.20 9.68 22.63 0.22 -2.98 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.52 7.59 -2.39 -0.02 1.50 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.80 7.06 -2.38 -0.02 1.78 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.41 12.02 5.80 -92.71 -0.54 11.48 16 32 H 0.16 2.63 6.54 -2.91 -0.02 2.61 16 33 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.14 3.58 7.74 -2.91 -0.02 3.56 16 Total: -1.00 -66.56 300.91 3.16 -63.40 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.55 Total: 16.54 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.81 Total: -6.59 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -4.17 Total: -91.83 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -66.56 3.16 -63.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.117 kcal (2) G-P(sol) polarization free energy of solvation -66.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds