Wall clock time and date at job start Mon Mar 30 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47427 * 2 1 4 4 H 1.08993 * 109.47026 * 306.74000 * 3 2 1 5 5 C 1.50695 * 109.47006 * 186.73294 * 3 2 1 6 6 H 1.08001 * 120.00349 * 245.21314 * 5 3 2 7 7 C 1.37874 * 120.00079 * 65.22084 * 5 3 2 8 8 N 1.31512 * 120.00230 * 196.39735 * 7 5 3 9 9 Si 1.86800 * 119.99980 * 16.38627 * 7 5 3 10 10 H 1.48503 * 109.46813 * 94.55206 * 9 7 5 11 11 H 1.48501 * 109.47610 * 214.54988 * 9 7 5 12 12 H 1.48496 * 109.47349 * 334.55531 * 9 7 5 13 13 C 1.53007 * 109.46695 * 66.73421 * 3 2 1 14 14 N 1.46501 * 109.47268 * 292.83251 * 13 3 2 15 15 C 1.34772 * 119.99626 * 173.27535 * 14 13 3 16 16 O 1.21548 * 120.00558 * 359.97438 * 15 14 13 17 17 C 1.47844 * 119.99740 * 179.97438 * 15 14 13 18 18 C 1.40025 * 120.56045 * 180.27446 * 17 15 14 19 19 C 1.38359 * 118.28855 * 180.24363 * 18 17 15 20 20 C 1.38356 * 119.30000 * 359.46121 * 19 18 17 21 21 N 1.31919 * 121.08217 * 0.29800 * 20 19 18 22 22 C 1.31694 * 121.88203 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.46970 * 52.43660 * 1 2 3 24 24 H 1.08999 * 109.47558 * 172.43607 * 1 2 3 25 25 H 1.09004 * 109.47209 * 292.43922 * 1 2 3 26 26 H 1.08996 * 109.47284 * 239.99916 * 2 1 3 27 27 H 1.09000 * 109.46718 * 120.00321 * 2 1 3 28 28 H 0.97002 * 120.00491 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46707 * 172.82845 * 13 3 2 30 30 H 1.08998 * 109.47262 * 52.83368 * 13 3 2 31 31 H 0.96997 * 119.99988 * 353.26626 * 14 13 3 32 32 H 1.08005 * 120.85495 * 359.97438 * 18 17 15 33 33 H 1.08000 * 120.34603 * 179.73531 * 19 18 17 34 34 H 1.08003 * 119.45663 * 180.28437 * 20 19 18 35 35 H 1.07999 * 119.72182 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5816 1.9899 -0.8235 5 6 3.5378 1.4456 -0.1666 6 1 4.1692 1.8054 0.6323 7 6 4.1020 0.9894 -1.3389 8 7 5.3811 0.6862 -1.3787 9 14 3.0495 0.8016 -2.8708 10 1 3.1589 2.0287 -3.6999 11 1 3.5201 -0.3688 -3.6544 12 1 1.6329 0.5956 -2.4759 13 6 1.6728 2.1132 1.3253 14 7 0.2181 2.2643 1.4096 15 6 -0.3484 2.7077 2.5492 16 8 0.3476 2.9819 3.5073 17 6 -1.8164 2.8607 2.6341 18 6 -2.4169 3.3260 3.8104 19 6 -3.7949 3.4464 3.8399 20 6 -4.5276 3.1172 2.7133 21 7 -3.9341 2.6861 1.6169 22 6 -2.6264 2.5496 1.5415 23 1 -0.3633 0.6265 -0.8146 24 1 -0.3634 -1.0187 -0.1353 25 1 -0.3634 0.3923 0.9499 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 5.7781 0.3656 -2.2037 29 1 2.1438 3.0948 1.3784 30 1 2.0227 1.4971 2.1536 31 1 -0.3374 2.0452 0.6451 32 1 -1.8201 3.5801 4.6740 33 1 -4.2930 3.7978 4.7314 34 1 -5.6031 3.2146 2.7320 35 1 -2.1771 2.1940 0.6260 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259726741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:59 Heat of formation + Delta-G solvation = -0.935552 kcal Electronic energy + Delta-G solvation = -17751.070960 eV Core-core repulsion = 14942.205950 eV Total energy + Delta-G solvation = -2808.865010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64889 -38.96125 -36.45321 -33.38888 -32.67389 -31.97391 -31.33991 -28.97872 -25.74477 -24.05649 -23.50409 -22.40352 -20.54146 -19.89168 -17.88904 -17.12981 -16.70678 -16.38893 -15.43214 -15.06426 -14.75326 -14.49264 -14.07628 -13.66557 -13.34000 -13.14187 -12.99286 -12.69737 -12.38881 -12.26678 -11.55174 -11.40916 -10.91124 -10.40043 -10.35496 -10.11984 -10.11139 -9.85945 -9.66394 -9.43880 -9.39184 -9.22158 -8.52040 -8.42995 -6.17304 -4.13099 0.49744 0.99179 2.93402 3.23431 3.33692 3.35066 3.41933 3.75016 4.09758 4.36341 4.55613 4.65386 4.74136 4.90660 5.12189 5.18626 5.34892 5.67553 5.75725 5.81647 5.88019 5.97032 6.06724 6.20647 6.32339 6.47540 6.48367 6.63632 6.73956 6.89546 7.18149 7.36810 7.61915 7.68332 7.77155 8.36659 8.44445 8.90349 9.47110 10.95397 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.005339 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.631697 B = 5243.023968 C = 5718.651290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C 0.010 3.990 4 H 0.029 0.971 5 C -0.523 4.523 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.865 3.135 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.133 3.867 14 N -0.716 5.716 15 C 0.550 3.450 16 O -0.541 6.541 17 C -0.179 4.179 18 C -0.020 4.020 19 C -0.181 4.181 20 C 0.114 3.886 21 N -0.487 5.487 22 C 0.131 3.869 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.400 0.600 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.658 3.197 6.070 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.157 4.157 3 C -0.010 4.010 4 H 0.047 0.953 5 C -0.561 4.561 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.692 3.308 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.011 3.989 14 N -0.370 5.370 15 C 0.335 3.665 16 O -0.419 6.419 17 C -0.184 4.184 18 C -0.047 4.047 19 C -0.200 4.200 20 C -0.043 4.043 21 N -0.196 5.196 22 C -0.028 4.028 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.238 0.762 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.470 3.101 5.886 19.631 hybrid contribution -0.130 -0.067 -0.603 0.621 sum -18.599 3.034 5.283 19.572 Atomic orbital electron populations 1.22326 0.99079 1.00818 1.00771 1.21957 0.92330 0.99872 1.01586 1.19365 0.97813 0.91770 0.92025 0.95279 1.20762 0.88689 1.43970 1.02634 0.90640 1.24929 0.94765 0.93922 0.98820 1.69983 1.12339 1.42776 1.27386 0.87116 0.82242 0.77805 0.83626 1.20692 1.21397 1.17730 1.21651 0.76047 1.00977 1.00198 1.46772 1.10597 1.65122 1.14462 1.18064 0.86595 0.78122 0.83727 1.90763 1.63619 1.50593 1.36949 1.21215 0.95300 1.05210 0.96691 1.21775 0.94614 0.91149 0.97126 1.22171 0.94430 1.02827 1.00613 1.22989 1.00751 0.92373 0.88176 1.67701 1.11362 1.13246 1.27250 1.23043 0.89172 0.93242 0.97299 0.93464 0.93707 0.92306 0.92609 0.92481 0.92566 0.91757 0.91402 0.76174 0.83464 0.84085 0.82324 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.36 37.16 0.31 -2.41 16 2 C -0.12 -2.39 4.67 -26.73 -0.12 -2.52 16 3 C 0.01 0.21 1.53 -91.77 -0.14 0.07 16 4 H 0.03 0.62 6.64 -51.93 -0.34 0.28 16 5 C -0.52 -13.96 8.97 -34.44 -0.31 -14.27 16 6 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 7 C 0.08 2.17 5.31 -17.82 -0.09 2.08 16 8 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 9 Si 0.87 20.28 25.79 -169.99 -4.38 15.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.25 -5.45 5.62 56.52 0.32 -5.13 16 13 C 0.13 2.62 4.99 -4.04 -0.02 2.60 16 14 N -0.72 -11.65 3.70 -61.25 -0.23 -11.88 16 15 C 0.55 9.02 7.78 -12.33 -0.10 8.93 16 16 O -0.54 -10.66 16.40 5.32 0.09 -10.58 16 17 C -0.18 -2.36 5.89 -104.82 -0.62 -2.98 16 18 C -0.02 -0.23 9.72 -38.87 -0.38 -0.60 16 19 C -0.18 -1.56 10.10 -39.49 -0.40 -1.95 16 20 C 0.11 1.04 11.17 -17.47 -0.20 0.85 16 21 N -0.49 -5.72 10.35 -12.91 -0.13 -5.85 16 22 C 0.13 1.58 10.71 -17.13 -0.18 1.39 16 23 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.86 5.53 -51.93 -0.29 0.57 16 26 H 0.06 1.19 5.23 -51.93 -0.27 0.92 16 27 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 31 H 0.40 5.65 3.81 -40.82 -0.16 5.50 16 32 H 0.15 1.60 7.74 -52.48 -0.41 1.19 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.16 1.66 6.42 -52.49 -0.34 1.33 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -31.43 287.28 -6.18 -37.60 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.38 Total: 4.83 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.25 Total: -8.82 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.41 Total: -43.26 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.38 Total: 15.89 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.43 -6.18 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.668 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds