Wall clock time and date at job start Mon Mar 30 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47427 * 2 1 4 4 H 1.08993 * 109.47026 * 306.74000 * 3 2 1 5 5 C 1.50695 * 109.47006 * 186.73294 * 3 2 1 6 6 H 1.08001 * 120.00349 * 245.21314 * 5 3 2 7 7 C 1.37874 * 120.00079 * 65.22084 * 5 3 2 8 8 N 1.31512 * 120.00230 * 196.39735 * 7 5 3 9 9 Si 1.86800 * 119.99980 * 16.38627 * 7 5 3 10 10 H 1.48503 * 109.46813 * 94.55206 * 9 7 5 11 11 H 1.48501 * 109.47610 * 214.54988 * 9 7 5 12 12 H 1.48496 * 109.47349 * 334.55531 * 9 7 5 13 13 C 1.53007 * 109.46695 * 66.73421 * 3 2 1 14 14 N 1.46501 * 109.47268 * 292.83251 * 13 3 2 15 15 C 1.34772 * 119.99626 * 173.27535 * 14 13 3 16 16 O 1.21548 * 120.00558 * 359.97438 * 15 14 13 17 17 C 1.47844 * 119.99740 * 179.97438 * 15 14 13 18 18 C 1.40025 * 120.56045 * 180.27446 * 17 15 14 19 19 C 1.38359 * 118.28855 * 180.24363 * 18 17 15 20 20 C 1.38356 * 119.30000 * 359.46121 * 19 18 17 21 21 N 1.31919 * 121.08217 * 0.29800 * 20 19 18 22 22 C 1.31694 * 121.88203 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.46970 * 52.43660 * 1 2 3 24 24 H 1.08999 * 109.47558 * 172.43607 * 1 2 3 25 25 H 1.09004 * 109.47209 * 292.43922 * 1 2 3 26 26 H 1.08996 * 109.47284 * 239.99916 * 2 1 3 27 27 H 1.09000 * 109.46718 * 120.00321 * 2 1 3 28 28 H 0.97002 * 120.00491 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46707 * 172.82845 * 13 3 2 30 30 H 1.08998 * 109.47262 * 52.83368 * 13 3 2 31 31 H 0.96997 * 119.99988 * 353.26626 * 14 13 3 32 32 H 1.08005 * 120.85495 * 359.97438 * 18 17 15 33 33 H 1.08000 * 120.34603 * 179.73531 * 19 18 17 34 34 H 1.08003 * 119.45663 * 180.28437 * 20 19 18 35 35 H 1.07999 * 119.72182 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5816 1.9899 -0.8235 5 6 3.5378 1.4456 -0.1666 6 1 4.1692 1.8054 0.6323 7 6 4.1020 0.9894 -1.3389 8 7 5.3811 0.6862 -1.3787 9 14 3.0495 0.8016 -2.8708 10 1 3.1589 2.0287 -3.6999 11 1 3.5201 -0.3688 -3.6544 12 1 1.6329 0.5956 -2.4759 13 6 1.6728 2.1132 1.3253 14 7 0.2181 2.2643 1.4096 15 6 -0.3484 2.7077 2.5492 16 8 0.3476 2.9819 3.5073 17 6 -1.8164 2.8607 2.6341 18 6 -2.4169 3.3260 3.8104 19 6 -3.7949 3.4464 3.8399 20 6 -4.5276 3.1172 2.7133 21 7 -3.9341 2.6861 1.6169 22 6 -2.6264 2.5496 1.5415 23 1 -0.3633 0.6265 -0.8146 24 1 -0.3634 -1.0187 -0.1353 25 1 -0.3634 0.3923 0.9499 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 5.7781 0.3656 -2.2037 29 1 2.1438 3.0948 1.3784 30 1 2.0227 1.4971 2.1536 31 1 -0.3374 2.0452 0.6451 32 1 -1.8201 3.5801 4.6740 33 1 -4.2930 3.7978 4.7314 34 1 -5.6031 3.2146 2.7320 35 1 -2.1771 2.1940 0.6260 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259726741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:59 Heat of formation + Delta-G solvation = -22.442927 kcal Electronic energy + Delta-G solvation = -17752.003590 eV Core-core repulsion = 14942.205950 eV Total energy + Delta-G solvation = -2809.797640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.65997 -40.14732 -38.04337 -35.05669 -33.72785 -33.49941 -32.37656 -30.54898 -27.30391 -25.26090 -24.43653 -23.87589 -21.96101 -21.38292 -19.13794 -18.83551 -17.78247 -17.38654 -16.87561 -16.44663 -16.17158 -15.84520 -15.31254 -14.81553 -14.74022 -14.40552 -14.39061 -14.09932 -13.84289 -13.24542 -13.10019 -13.03716 -12.63312 -12.22802 -11.94442 -11.58872 -11.49009 -11.15656 -11.12403 -10.97245 -10.59415 -10.46908 -10.28009 -9.90743 -8.30698 -6.31565 -0.38079 0.19790 1.38290 1.42004 1.52104 1.80190 2.12665 2.37917 2.84675 3.04232 3.30673 3.71078 3.81318 3.93871 4.02316 4.13426 4.28835 4.45084 4.48930 4.56584 4.64057 4.67041 4.81730 5.01921 5.04093 5.14107 5.22047 5.23542 5.30091 5.51911 5.58936 5.61332 5.78924 6.26975 6.47629 6.73261 6.83476 7.11808 7.32107 8.86076 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.005339 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.631697 B = 5243.023968 C = 5718.651290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C 0.014 3.986 4 H 0.044 0.956 5 C -0.531 4.531 6 H 0.028 0.972 7 C 0.020 3.980 8 N -0.942 5.942 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.216 1.216 13 C 0.148 3.852 14 N -0.707 5.707 15 C 0.552 3.448 16 O -0.582 6.582 17 C -0.200 4.200 18 C -0.031 4.031 19 C -0.166 4.166 20 C 0.120 3.880 21 N -0.505 5.505 22 C 0.131 3.869 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.413 0.587 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.197 0.803 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.130 3.249 5.411 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.158 4.158 3 C -0.006 4.006 4 H 0.062 0.938 5 C -0.569 4.569 6 H 0.047 0.953 7 C -0.178 4.178 8 N -0.581 5.581 9 Si 0.755 3.245 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.138 1.138 13 C 0.024 3.976 14 N -0.361 5.361 15 C 0.339 3.661 16 O -0.464 6.464 17 C -0.205 4.205 18 C -0.057 4.057 19 C -0.185 4.185 20 C -0.036 4.036 21 N -0.214 5.214 22 C -0.027 4.027 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.214 0.786 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.993 3.155 5.227 23.790 hybrid contribution 1.247 -0.030 -0.247 1.272 sum -21.745 3.126 4.980 22.526 Atomic orbital electron populations 1.22249 0.95154 1.02788 1.02166 1.21849 0.95803 0.97701 1.00453 1.19280 0.94447 0.93616 0.93226 0.93806 1.21072 0.91347 1.43099 1.01429 0.95338 1.25857 0.96025 0.93562 1.02398 1.70135 1.14804 1.44808 1.28401 0.86046 0.82235 0.77555 0.78624 1.20396 1.21635 1.13785 1.21177 0.78351 0.99417 0.98630 1.46501 1.08924 1.65357 1.15325 1.18574 0.88079 0.76692 0.82720 1.90739 1.65005 1.52358 1.38293 1.20940 0.92863 1.08230 0.98471 1.21957 0.96119 0.91188 0.96459 1.22535 0.92987 1.01138 1.01859 1.23697 1.02544 0.90093 0.87293 1.67788 1.10896 1.14143 1.28570 1.23154 0.89430 0.92967 0.97161 0.91433 0.91695 0.91429 0.93730 0.93869 0.92517 0.93522 0.93333 0.74575 0.83808 0.80358 0.78589 0.81426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 8.36 71.98 0.60 -4.05 16 2 C -0.12 -4.64 4.67 30.59 0.14 -4.50 16 3 C 0.01 0.58 1.53 -11.54 -0.02 0.57 16 4 H 0.04 1.78 6.64 -2.39 -0.02 1.77 16 5 C -0.53 -29.51 8.97 25.60 0.23 -29.28 16 6 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 7 C 0.02 1.11 5.31 84.65 0.45 1.56 16 8 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 9 Si 0.93 41.43 25.79 68.60 1.77 43.20 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.22 -8.21 5.62 99.48 0.56 -7.65 16 13 C 0.15 5.96 4.99 86.38 0.43 6.39 16 14 N -0.71 -22.44 3.70 -465.97 -1.72 -24.16 16 15 C 0.55 17.96 7.78 86.79 0.68 18.63 16 16 O -0.58 -23.56 16.40 -3.87 -0.06 -23.62 16 17 C -0.20 -4.96 5.89 -19.99 -0.12 -5.08 16 18 C -0.03 -0.63 9.72 22.73 0.22 -0.41 16 19 C -0.17 -2.19 10.10 22.33 0.23 -1.97 16 20 C 0.12 1.66 11.17 84.71 0.95 2.60 16 21 N -0.51 -10.04 10.35 -194.75 -2.01 -12.05 16 22 C 0.13 2.80 10.71 85.02 0.91 3.71 16 23 H 0.07 1.64 7.79 -2.39 -0.02 1.62 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.78 5.53 -2.39 -0.01 1.77 16 26 H 0.04 1.81 5.23 -2.39 -0.01 1.80 16 27 H 0.04 1.75 8.12 -2.39 -0.02 1.73 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 30 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 31 H 0.41 10.72 3.81 -92.71 -0.35 10.37 16 32 H 0.14 2.99 7.74 -2.91 -0.02 2.97 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.20 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.17 3.02 6.42 -2.91 -0.02 3.00 16 Total: -1.00 -72.06 287.28 3.57 -68.50 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.60 Total: 17.75 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.70 Total: -11.82 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -3.44 Total: -94.00 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.77 Total: 43.20 kcal Total: -72.06 3.57 -68.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.053 kcal (2) G-P(sol) polarization free energy of solvation -72.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds