Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30908 * 126.19960 * 2 1 4 4 N 1.40308 * 109.10146 * 179.97438 * 3 2 1 5 5 C 1.46492 * 125.73510 * 179.89589 * 4 3 2 6 6 C 1.33154 * 108.52599 * 359.92056 * 4 3 2 7 7 C 1.39270 * 107.10246 * 0.14281 * 6 4 3 8 8 C 1.47155 * 121.49951 * 179.78844 * 7 6 4 9 9 O 1.21309 * 122.44804 * 168.44977 * 8 7 6 10 10 C 1.52151 * 115.09082 * 348.43061 * 8 7 6 11 11 C 1.53188 * 108.46097 * 42.84677 * 10 8 7 12 12 H 1.08997 * 109.23242 * 55.39491 * 11 10 8 13 13 C 1.52998 * 109.23581 * 174.81366 * 11 10 8 14 14 C 1.50706 * 109.47348 * 295.57853 * 13 11 10 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.50583 * 129.79364 * 180.16445 * 6 4 3 23 23 H 1.09006 * 109.47312 * 270.04750 * 1 2 3 24 24 H 1.09001 * 109.46978 * 30.04066 * 1 2 3 25 25 H 1.08998 * 109.47483 * 150.04541 * 1 2 3 26 26 H 1.09001 * 109.47418 * 270.02609 * 5 4 3 27 27 H 1.09001 * 109.47518 * 30.03015 * 5 4 3 28 28 H 1.09002 * 109.47430 * 150.02733 * 5 4 3 29 29 H 1.09008 * 109.66927 * 283.14106 * 10 8 7 30 30 H 1.09000 * 109.61403 * 162.52590 * 10 8 7 31 31 H 1.09001 * 109.47671 * 175.58062 * 13 11 10 32 32 H 1.09006 * 109.47297 * 55.57781 * 13 11 10 33 33 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 34 34 H 1.08997 * 109.51011 * 39.68313 * 22 6 4 35 35 H 1.09007 * 109.51100 * 279.53898 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2801 1.0564 0.0000 4 7 3.6212 0.6439 0.0006 5 6 4.7886 1.5289 -0.0014 6 6 3.6544 -0.6873 0.0027 7 6 2.3339 -1.1299 0.0002 8 6 2.0036 -2.5639 -0.0031 9 8 0.8799 -2.9735 0.1996 10 6 3.1747 -3.4950 -0.2798 11 6 4.3879 -2.9972 0.5121 12 1 4.1227 -2.9240 1.5668 13 6 5.5386 -3.9923 0.3497 14 6 5.1534 -5.3113 0.9687 15 1 4.1848 -5.4280 1.4320 16 6 6.0375 -6.3690 0.9436 17 7 7.2172 -6.2268 0.3799 18 14 5.5602 -8.0036 1.7115 19 1 6.6766 -8.9698 1.5527 20 1 5.2760 -7.8078 3.1559 21 1 4.3483 -8.5328 1.0358 22 6 4.8350 -1.6219 0.0075 23 1 -0.3634 0.0009 1.0277 24 1 -0.3633 0.8896 -0.5145 25 1 -0.3634 -0.8903 -0.5131 26 1 5.0777 1.7467 -1.0295 27 1 4.5407 2.4584 0.5111 28 1 5.6160 1.0400 0.5129 29 1 3.4049 -3.4884 -1.3453 30 1 2.9205 -4.5066 0.0368 31 1 6.4278 -3.6039 0.8463 32 1 5.7481 -4.1359 -0.7104 33 1 7.4651 -5.3778 -0.0186 34 1 5.6093 -1.2269 0.6651 35 1 5.2290 -1.7159 -1.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259831844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = 10.491007 kcal Electronic energy + Delta-G solvation = -17979.198732 eV Core-core repulsion = 15170.829215 eV Total energy + Delta-G solvation = -2808.369517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56615 -38.42136 -36.30234 -34.11289 -33.01111 -30.28088 -29.49009 -28.50487 -26.61170 -25.58410 -23.25235 -21.66933 -20.42132 -19.41497 -18.35781 -16.92767 -16.55987 -15.84533 -15.19213 -14.48783 -14.24554 -13.97715 -13.83225 -13.67037 -13.42789 -13.10878 -13.00049 -12.58143 -12.19002 -12.15798 -11.74793 -11.67721 -11.34767 -10.95287 -10.77407 -10.56118 -10.18606 -10.10025 -9.89989 -9.18087 -9.00110 -8.60678 -8.41130 -8.37421 -6.40505 -4.10591 1.49545 2.10157 2.31526 3.37792 3.44808 3.45679 3.64025 4.32384 4.49136 4.54870 4.71117 4.84447 4.92874 5.04752 5.18720 5.29768 5.32735 5.38706 5.62278 5.66379 5.71602 5.83483 5.87247 5.95063 6.02284 6.16172 6.55903 6.58122 6.66834 6.76635 6.91493 7.21214 7.35517 7.63780 8.08072 8.12605 8.41033 8.83115 9.60647 10.99901 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.005959 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.204468 B = 4697.854651 C = 5492.477079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.131 3.869 3 N -0.319 5.319 4 N -0.354 5.354 5 C 0.094 3.906 6 C 0.151 3.849 7 C -0.333 4.333 8 C 0.432 3.568 9 O -0.475 6.475 10 C -0.147 4.147 11 C -0.061 4.061 12 H 0.068 0.932 13 C 0.016 3.984 14 C -0.601 4.601 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 1.065 2.935 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.286 1.286 22 C -0.062 4.062 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.012 0.988 32 H 0.013 0.987 33 H 0.268 0.732 34 H 0.084 0.916 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 13.786 -1.925 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.047 4.047 6 C 0.016 3.984 7 C -0.345 4.345 8 C 0.311 3.689 9 O -0.351 6.351 10 C -0.184 4.184 11 C -0.080 4.080 12 H 0.087 0.913 13 C -0.021 4.021 14 C -0.639 4.639 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.548 5.548 18 Si 0.893 3.107 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.101 4.101 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.084 13.439 -1.529 14.450 hybrid contribution -0.274 0.992 -0.289 1.069 sum -5.358 14.431 -1.818 15.501 Atomic orbital electron populations 1.20231 0.86029 1.03419 1.03401 1.22155 0.96879 0.89506 0.94850 1.77403 0.85381 1.22167 1.29168 1.48008 1.06255 1.04320 1.54354 1.21979 0.84259 0.94647 1.03815 1.22269 0.97709 0.84574 0.93811 1.20910 0.91730 0.96672 1.25166 1.22222 0.89120 0.87320 0.70244 1.90455 1.24804 1.80769 1.39107 1.22362 0.93505 1.00671 1.01879 1.21061 0.96429 0.91554 0.98998 0.91314 1.19276 0.92142 0.93859 0.96857 1.22017 1.03849 0.97134 1.40918 0.92924 1.25800 0.93693 1.03202 0.95952 1.70810 1.20604 1.28205 1.35221 0.83587 0.75662 0.75335 0.76079 1.20829 1.21424 1.21290 1.20698 0.92330 0.93682 1.03379 0.90155 0.91048 0.89590 0.90239 0.89009 0.88979 0.89150 0.87537 0.96974 0.96894 0.92194 0.89784 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.14 36.00 0.37 -0.57 16 2 C 0.13 2.11 7.26 -82.32 -0.60 1.51 16 3 N -0.32 -5.03 12.52 33.71 0.42 -4.61 16 4 N -0.35 -4.94 3.96 -63.31 -0.25 -5.19 16 5 C 0.09 0.83 11.31 59.84 0.68 1.51 16 6 C 0.15 2.32 6.84 -81.69 -0.56 1.76 16 7 C -0.33 -5.72 6.08 -105.23 -0.64 -6.36 16 8 C 0.43 8.05 7.09 -29.97 -0.21 7.84 16 9 O -0.47 -9.74 16.95 5.53 0.09 -9.64 16 10 C -0.15 -2.73 5.29 -27.07 -0.14 -2.87 16 11 C -0.06 -1.14 2.06 -90.43 -0.19 -1.33 16 12 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.02 0.36 3.74 -27.88 -0.10 0.25 16 14 C -0.60 -16.01 8.33 -34.44 -0.29 -16.30 16 15 H 0.05 1.40 7.04 -52.48 -0.37 1.03 16 16 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 17 N -0.91 -26.74 13.65 55.43 0.76 -25.98 16 18 Si 1.07 24.71 29.90 -169.99 -5.08 19.63 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.06 -0.91 5.21 -27.85 -0.15 -1.06 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.65 7.57 -51.93 -0.39 0.26 16 29 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.11 2.21 6.78 -51.93 -0.35 1.85 16 31 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 32 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 33 H 0.27 7.71 7.22 -40.82 -0.29 7.41 16 34 H 0.08 1.09 7.71 -51.93 -0.40 0.69 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -32.44 293.86 -6.34 -38.79 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.78 Total: -2.18 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.93 Total: -15.23 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.93 Total: -35.79 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.44 -6.34 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.277 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds