Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30908 * 126.19960 * 2 1 4 4 N 1.40308 * 109.10146 * 179.97438 * 3 2 1 5 5 C 1.46492 * 125.73510 * 179.89589 * 4 3 2 6 6 C 1.33154 * 108.52599 * 359.92056 * 4 3 2 7 7 C 1.39270 * 107.10246 * 0.14281 * 6 4 3 8 8 C 1.47155 * 121.49951 * 179.78844 * 7 6 4 9 9 O 1.21309 * 122.44804 * 168.44977 * 8 7 6 10 10 C 1.52151 * 115.09082 * 348.43061 * 8 7 6 11 11 C 1.53188 * 108.46097 * 42.84677 * 10 8 7 12 12 H 1.08997 * 109.23242 * 55.39491 * 11 10 8 13 13 C 1.52998 * 109.23581 * 174.81366 * 11 10 8 14 14 C 1.50706 * 109.47348 * 295.57853 * 13 11 10 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.50583 * 129.79364 * 180.16445 * 6 4 3 23 23 H 1.09006 * 109.47312 * 270.04750 * 1 2 3 24 24 H 1.09001 * 109.46978 * 30.04066 * 1 2 3 25 25 H 1.08998 * 109.47483 * 150.04541 * 1 2 3 26 26 H 1.09001 * 109.47418 * 270.02609 * 5 4 3 27 27 H 1.09001 * 109.47518 * 30.03015 * 5 4 3 28 28 H 1.09002 * 109.47430 * 150.02733 * 5 4 3 29 29 H 1.09008 * 109.66927 * 283.14106 * 10 8 7 30 30 H 1.09000 * 109.61403 * 162.52590 * 10 8 7 31 31 H 1.09001 * 109.47671 * 175.58062 * 13 11 10 32 32 H 1.09006 * 109.47297 * 55.57781 * 13 11 10 33 33 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 34 34 H 1.08997 * 109.51011 * 39.68313 * 22 6 4 35 35 H 1.09007 * 109.51100 * 279.53898 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2801 1.0564 0.0000 4 7 3.6212 0.6439 0.0006 5 6 4.7886 1.5289 -0.0014 6 6 3.6544 -0.6873 0.0027 7 6 2.3339 -1.1299 0.0002 8 6 2.0036 -2.5639 -0.0031 9 8 0.8799 -2.9735 0.1996 10 6 3.1747 -3.4950 -0.2798 11 6 4.3879 -2.9972 0.5121 12 1 4.1227 -2.9240 1.5668 13 6 5.5386 -3.9923 0.3497 14 6 5.1534 -5.3113 0.9687 15 1 4.1848 -5.4280 1.4320 16 6 6.0375 -6.3690 0.9436 17 7 7.2172 -6.2268 0.3799 18 14 5.5602 -8.0036 1.7115 19 1 6.6766 -8.9698 1.5527 20 1 5.2760 -7.8078 3.1559 21 1 4.3483 -8.5328 1.0358 22 6 4.8350 -1.6219 0.0075 23 1 -0.3634 0.0009 1.0277 24 1 -0.3633 0.8896 -0.5145 25 1 -0.3634 -0.8903 -0.5131 26 1 5.0777 1.7467 -1.0295 27 1 4.5407 2.4584 0.5111 28 1 5.6160 1.0400 0.5129 29 1 3.4049 -3.4884 -1.3453 30 1 2.9205 -4.5066 0.0368 31 1 6.4278 -3.6039 0.8463 32 1 5.7481 -4.1359 -0.7104 33 1 7.4651 -5.3778 -0.0186 34 1 5.6093 -1.2269 0.6651 35 1 5.2290 -1.7159 -1.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = -9.214464 kcal Electronic energy + Delta-G solvation = -17980.053226 eV Core-core repulsion = 15170.829215 eV Total energy + Delta-G solvation = -2809.224011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.76133 -39.87610 -37.84678 -35.27035 -34.86611 -31.72156 -30.50560 -29.88419 -28.28804 -26.59577 -25.15863 -22.94366 -22.02795 -20.56349 -19.70761 -18.87308 -17.81109 -16.97473 -16.54059 -15.98372 -15.67878 -15.62720 -15.35095 -14.96334 -14.60138 -14.40598 -14.10741 -13.69119 -13.58468 -13.42734 -13.32451 -12.89603 -12.89056 -12.53856 -12.36042 -11.97328 -11.95079 -11.73989 -11.58605 -10.60954 -10.52043 -10.44583 -10.26309 -9.65467 -8.59563 -6.29180 0.22240 0.86449 1.31341 1.56559 1.62449 1.81618 2.02995 2.59502 3.16366 3.23736 3.37335 3.39899 3.66003 3.90780 4.04409 4.25976 4.29418 4.34182 4.36868 4.55711 4.60001 4.60473 4.68476 4.72770 4.88393 4.93262 4.98881 5.06196 5.20886 5.34987 5.46604 5.53615 5.80960 6.08504 6.27785 6.45100 6.65100 6.69184 7.48156 8.82391 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.005959 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.204468 B = 4697.854651 C = 5492.477079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.122 3.878 3 N -0.329 5.329 4 N -0.345 5.345 5 C 0.080 3.920 6 C 0.160 3.840 7 C -0.364 4.364 8 C 0.435 3.565 9 O -0.503 6.503 10 C -0.144 4.144 11 C -0.050 4.050 12 H 0.054 0.946 13 C 0.020 3.980 14 C -0.610 4.610 15 H 0.045 0.955 16 C -0.032 4.032 17 N -0.939 5.939 18 Si 1.105 2.895 19 H -0.284 1.284 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.051 4.051 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.109 0.891 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 15.337 -1.913 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.042 4.042 3 N -0.152 5.152 4 N -0.120 5.120 5 C -0.059 4.059 6 C 0.023 3.977 7 C -0.376 4.376 8 C 0.316 3.684 9 O -0.382 6.382 10 C -0.182 4.182 11 C -0.070 4.070 12 H 0.073 0.927 13 C -0.017 4.017 14 C -0.648 4.648 15 H 0.064 0.936 16 C -0.230 4.230 17 N -0.577 5.577 18 Si 0.928 3.072 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.090 4.090 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.800 15.038 -1.519 15.859 hybrid contribution -0.323 0.595 -0.302 0.741 sum -5.123 15.633 -1.821 16.551 Atomic orbital electron populations 1.20295 0.84568 1.04014 1.04068 1.22544 0.98116 0.89116 0.94462 1.77376 0.86253 1.22137 1.29439 1.48403 1.06851 1.04292 1.52433 1.22482 0.82990 0.94657 1.05795 1.22173 0.96983 0.85412 0.93180 1.20890 0.93169 0.95938 1.27601 1.22236 0.88457 0.88258 0.69435 1.90435 1.25643 1.81356 1.40777 1.22280 0.93914 0.99355 1.02614 1.20822 0.94669 0.93023 0.98458 0.92731 1.19165 0.93332 0.93484 0.95742 1.22429 1.03334 0.98849 1.40224 0.93626 1.27050 0.93429 1.06503 0.96051 1.70920 1.21704 1.28017 1.37059 0.83058 0.75728 0.72111 0.76280 1.20982 1.19917 1.19965 1.20565 0.92525 0.91002 1.04872 0.89393 0.88921 0.90465 0.88132 0.87672 0.86799 0.87833 0.90314 0.97616 0.97601 0.93052 0.87242 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.14 71.24 0.72 -1.05 16 2 C 0.12 3.77 7.26 43.13 0.31 4.08 16 3 N -0.33 -9.65 12.52 -47.26 -0.59 -10.24 16 4 N -0.34 -8.59 3.96 -354.21 -1.40 -9.99 16 5 C 0.08 1.09 11.31 127.77 1.45 2.53 16 6 C 0.16 4.53 6.84 42.57 0.29 4.82 16 7 C -0.36 -12.13 6.08 -20.26 -0.12 -12.25 16 8 C 0.43 16.28 7.09 28.50 0.20 16.48 16 9 O -0.50 -21.03 16.95 -3.12 -0.05 -21.09 16 10 C -0.14 -5.39 5.29 30.38 0.16 -5.23 16 11 C -0.05 -1.84 2.06 -10.67 -0.02 -1.86 16 12 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 13 C 0.02 0.90 3.74 29.85 0.11 1.02 16 14 C -0.61 -32.74 8.33 25.60 0.21 -32.53 16 15 H 0.05 2.46 7.04 -2.91 -0.02 2.44 16 16 C -0.03 -1.79 5.46 84.65 0.46 -1.32 16 17 N -0.94 -55.37 13.65 21.45 0.29 -55.08 16 18 Si 1.11 49.63 29.90 68.60 2.05 51.69 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C -0.05 -1.37 5.21 29.87 0.16 -1.21 16 23 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.05 7.42 -2.39 -0.02 2.03 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.10 7.57 -2.39 -0.02 1.08 16 29 H 0.10 3.54 8.14 -2.38 -0.02 3.52 16 30 H 0.08 3.36 6.78 -2.39 -0.02 3.34 16 31 H 0.01 0.26 8.01 -2.39 -0.02 0.24 16 32 H 0.01 0.27 8.01 -2.38 -0.02 0.25 16 33 H 0.26 15.13 7.22 -92.71 -0.67 14.46 16 34 H 0.11 2.42 7.71 -2.39 -0.02 2.40 16 35 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -69.94 293.86 5.42 -64.52 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.19 Total: 6.71 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.93 Total: -26.52 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.70 Total: -75.31 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.69 kcal Total: -69.94 5.42 -64.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.306 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds