Wall clock time and date at job start Mon Mar 30 2020 04:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 C 1.53007 * 109.47228 * 120.00074 * 2 1 3 5 5 H 1.09002 * 109.46893 * 296.05370 * 4 2 1 6 6 C 1.50697 * 109.46775 * 56.05090 * 4 2 1 7 7 H 1.07993 * 120.00442 * 25.61962 * 6 4 2 8 8 C 1.37881 * 119.99834 * 205.60993 * 6 4 2 9 9 N 1.31516 * 119.99709 * 5.35281 * 8 6 4 10 10 Si 1.86802 * 120.00184 * 185.34515 * 8 6 4 11 11 H 1.48503 * 109.47058 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46880 * 120.00415 * 10 8 6 13 13 H 1.48496 * 109.47153 * 240.00614 * 10 8 6 14 14 N 1.46497 * 109.47244 * 176.05389 * 4 2 1 15 15 C 1.34780 * 120.00085 * 84.99708 * 14 4 2 16 16 O 1.21516 * 119.99866 * 0.02562 * 15 14 4 17 17 C 1.48169 * 120.00214 * 180.02562 * 15 14 4 18 18 C 1.39300 * 119.72305 * 180.02562 * 17 15 14 19 19 C 1.38594 * 119.06038 * 179.72576 * 18 17 15 20 20 C 1.38627 * 118.48398 * 0.51102 * 19 18 17 21 21 C 1.38561 * 119.35442 * 359.48400 * 20 19 18 22 22 N 1.31526 * 120.89864 * 0.25130 * 21 20 19 23 23 H 1.08999 * 109.47234 * 294.22861 * 1 2 3 24 24 H 1.09004 * 109.46837 * 54.22876 * 1 2 3 25 25 H 1.08996 * 109.47270 * 174.22521 * 1 2 3 26 26 H 1.09001 * 109.47058 * 239.99853 * 2 1 3 27 27 H 1.08999 * 109.47470 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47145 * 299.99946 * 3 2 1 29 29 H 1.09001 * 109.47129 * 59.99897 * 3 2 1 30 30 H 0.97003 * 119.99603 * 179.97438 * 9 8 6 31 31 H 0.96997 * 120.00070 * 264.99890 * 14 4 2 32 32 H 1.08004 * 120.47248 * 359.97438 * 18 17 15 33 33 H 1.07996 * 120.76035 * 180.29720 * 19 18 17 34 34 H 1.08002 * 120.32332 * 179.75896 * 20 19 18 35 35 H 1.08001 * 119.55127 * 180.27651 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7356 -0.1682 2.1379 6 6 1.4593 -2.1110 1.2991 7 1 1.1545 -2.6019 0.3868 8 6 1.3174 -2.7559 2.5095 9 7 1.5895 -2.1209 3.6287 10 14 0.7386 -4.5312 2.5598 11 1 0.5017 -5.0140 1.1756 12 1 1.7777 -5.3725 3.2061 13 1 -0.5233 -4.6185 3.3377 14 7 3.5019 -0.8042 1.2027 15 6 4.2497 0.2245 1.6489 16 8 3.7114 1.2205 2.0903 17 6 5.7283 0.1410 1.6013 18 6 6.4956 1.2073 2.0645 19 6 7.8775 1.1122 2.0188 20 6 8.4440 -0.0423 1.5013 21 6 7.6194 -1.0639 1.0582 22 7 6.3105 -0.9495 1.1182 23 1 -0.3634 0.4217 0.9371 24 1 -0.3633 0.6008 -0.8338 25 1 -0.3633 -1.0224 -0.1034 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.4893 -2.5745 4.4802 31 1 3.9316 -1.5993 0.8507 32 1 6.0204 2.0941 2.4574 33 1 8.4989 1.9205 2.3750 34 1 9.5177 -0.1464 1.4480 35 1 8.0574 -1.9666 0.6586 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:25 Heat of formation + Delta-G solvation = -15.825707 kcal Electronic energy + Delta-G solvation = -18115.679075 eV Core-core repulsion = 15306.168380 eV Total energy + Delta-G solvation = -2809.510696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12080 -38.29715 -35.49943 -32.79101 -32.42081 -31.70678 -30.94831 -27.12923 -25.96331 -24.24362 -23.29017 -22.56620 -19.96656 -18.82399 -17.73852 -16.44710 -16.28436 -15.59233 -14.89012 -14.68391 -14.46089 -14.33550 -13.46629 -13.27459 -13.14748 -12.82645 -12.31775 -11.79608 -11.72402 -11.37792 -11.23585 -11.03737 -10.98158 -10.47878 -10.14349 -9.96290 -9.82327 -9.65028 -9.49269 -9.13740 -8.95195 -8.84529 -8.58937 -7.51703 -6.15852 -4.27130 0.97291 1.38353 3.22818 3.32544 3.35896 3.45401 4.11491 4.33056 4.41613 4.58818 4.87459 5.08576 5.14209 5.25648 5.45744 5.80237 5.87534 6.03895 6.08273 6.14549 6.20669 6.32602 6.51812 6.74955 6.77386 6.82631 6.90709 7.20726 7.23927 7.32785 7.64221 7.75418 7.87186 8.08015 8.11775 8.88472 8.96388 9.39127 9.43194 10.90451 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.007479 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.599922 B = 3743.002192 C = 4578.810111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 C -0.135 4.135 4 C 0.255 3.745 5 H 0.074 0.926 6 C -0.527 4.527 7 H 0.063 0.937 8 C 0.076 3.924 9 N -0.867 5.867 10 Si 0.893 3.107 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.283 1.283 14 N -0.670 5.670 15 C 0.547 3.453 16 O -0.552 6.552 17 C 0.096 3.904 18 C -0.123 4.123 19 C -0.086 4.086 20 C -0.168 4.168 21 C 0.093 3.907 22 N -0.457 5.457 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.264 0.736 31 H 0.394 0.606 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.516 3.291 -4.585 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.118 4.118 3 C -0.192 4.192 4 C 0.155 3.845 5 H 0.092 0.908 6 C -0.565 4.565 7 H 0.081 0.919 8 C -0.131 4.131 9 N -0.502 5.502 10 Si 0.720 3.280 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.209 1.209 14 N -0.316 5.316 15 C 0.330 3.670 16 O -0.432 6.432 17 C -0.043 4.043 18 C -0.143 4.143 19 C -0.112 4.112 20 C -0.188 4.188 21 C -0.066 4.066 22 N -0.169 5.169 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.228 0.772 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.506 3.285 -4.369 10.966 hybrid contribution 0.744 -0.751 0.365 1.119 sum 10.250 2.534 -4.004 11.292 Atomic orbital electron populations 1.21591 0.95557 1.01332 0.99650 1.21463 0.95633 0.94920 0.99767 1.21895 1.00641 0.96978 0.99685 1.19001 0.75270 0.96149 0.94078 0.90763 1.21226 1.41737 1.00444 0.93121 0.91903 1.25139 0.94033 0.98191 0.95710 1.70013 1.46125 1.36404 0.97655 0.86535 0.78372 0.84714 0.78375 1.19425 1.20877 1.20856 1.47308 1.09327 1.16579 1.58411 1.17982 0.84231 0.84855 0.79951 1.90702 1.72238 1.31968 1.48292 1.21938 0.96449 0.90103 0.95826 1.22178 0.93878 1.00092 0.98201 1.21567 0.94737 0.97858 0.97027 1.22259 1.01299 0.95005 1.00257 1.22798 0.88879 0.98465 0.96452 1.67670 1.12641 1.23779 1.12779 0.93274 0.95176 0.92077 0.93225 0.93457 0.95422 0.92633 0.92613 0.77154 0.83663 0.84667 0.84862 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.76 37.16 0.33 -2.17 16 2 C -0.10 -2.14 2.70 -90.62 -0.24 -2.38 16 3 C -0.13 -2.79 7.77 37.16 0.29 -2.50 16 4 C 0.25 6.37 1.85 -69.08 -0.13 6.24 16 5 H 0.07 2.17 6.95 -51.93 -0.36 1.81 16 6 C -0.53 -13.73 7.27 -34.44 -0.25 -13.98 16 7 H 0.06 1.60 7.58 -52.49 -0.40 1.21 16 8 C 0.08 2.03 5.45 -17.82 -0.10 1.94 16 9 N -0.87 -24.76 12.91 55.43 0.72 -24.05 16 10 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 N -0.67 -15.68 5.00 -55.77 -0.28 -15.96 16 15 C 0.55 12.42 6.33 -12.18 -0.08 12.34 16 16 O -0.55 -13.67 13.46 5.35 0.07 -13.60 16 17 C 0.10 1.82 6.75 -83.01 -0.56 1.26 16 18 C -0.12 -1.94 9.63 -39.06 -0.38 -2.32 16 19 C -0.09 -1.04 10.17 -39.31 -0.40 -1.43 16 20 C -0.17 -1.87 10.11 -39.32 -0.40 -2.27 16 21 C 0.09 1.24 11.18 -17.56 -0.20 1.04 16 22 N -0.46 -8.01 9.54 -9.80 -0.09 -8.10 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.25 7.18 -51.93 -0.37 0.88 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.01 5.67 -51.93 -0.29 0.72 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.22 7.78 -51.93 -0.40 0.82 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.39 8.91 7.92 -40.82 -0.32 8.59 16 32 H 0.15 2.26 7.64 -52.48 -0.40 1.86 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 295.52 15.07 4.45 4.45 Total: -1.00 -30.37 295.52 -6.91 -37.28 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.65 Total: 8.68 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.11 Total: -4.23 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.34 Total: -48.11 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.37 -6.91 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.457 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds