Wall clock time and date at job start Mon Mar 30 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32106 * 120.52003 * 2 1 4 4 C 1.32020 * 123.84750 * 180.21092 * 3 2 1 5 5 N 1.34279 * 121.62679 * 0.70087 * 4 3 2 6 6 C 1.35987 * 120.03331 * 358.41278 * 5 4 3 7 7 O 1.21741 * 120.70423 * 181.47686 * 6 5 4 8 8 C 1.40545 * 120.52690 * 179.97438 * 2 1 3 9 9 C 1.40588 * 121.53429 * 359.73836 * 8 2 1 10 10 H 1.08001 * 120.00156 * 317.75915 * 9 8 2 11 11 C 1.40064 * 119.99792 * 137.75120 * 9 8 2 12 12 N 1.30837 * 119.99693 * 159.47186 * 11 9 8 13 13 Si 1.86793 * 120.00180 * 339.47903 * 11 9 8 14 14 H 1.48509 * 109.47404 * 95.24736 * 13 11 9 15 15 H 1.48499 * 109.47194 * 215.24475 * 13 11 9 16 16 H 1.48500 * 109.47496 * 335.24714 * 13 11 9 17 17 C 1.46412 * 123.65920 * 177.79260 * 5 4 3 18 18 C 1.52579 * 111.24439 * 19.28843 * 17 5 4 19 19 C 1.53402 * 108.12262 * 308.67902 * 18 17 5 20 20 C 1.51107 * 115.95641 * 180.72451 * 4 3 2 21 21 H 1.09000 * 109.23841 * 77.80754 * 20 4 3 22 22 C 1.52993 * 109.23785 * 318.38020 * 20 4 3 23 23 H 1.09002 * 109.47642 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47245 * 119.99773 * 1 2 3 25 25 H 1.09003 * 109.46821 * 239.99701 * 1 2 3 26 26 H 0.96997 * 119.99767 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.12417 * 139.73545 * 17 5 4 28 28 H 1.08994 * 109.12994 * 258.82993 * 17 5 4 29 29 H 1.09007 * 109.73401 * 68.32399 * 18 17 5 30 30 H 1.08997 * 109.73735 * 188.96454 * 18 17 5 31 31 H 1.08996 * 109.75207 * 308.44279 * 19 18 17 32 32 H 1.09007 * 109.74904 * 187.70884 * 19 18 17 33 33 H 1.09001 * 109.47428 * 59.42734 * 22 20 4 34 34 H 1.08999 * 109.47375 * 179.42785 * 22 20 4 35 35 H 1.09010 * 109.47345 * 299.42868 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1778 1.1380 0.0000 4 6 3.4958 1.2147 -0.0040 5 7 4.2651 0.1142 -0.0225 6 6 3.6905 -1.1182 -0.0050 7 8 4.3766 -2.1238 0.0055 8 6 2.2208 -1.2106 0.0005 9 6 1.5621 -2.4527 0.0066 10 1 0.6999 -2.6036 0.6391 11 6 2.0241 -3.4943 -0.8079 12 7 1.7009 -4.7320 -0.5333 13 14 3.1017 -3.1164 -2.2861 14 1 4.5304 -3.2611 -1.9073 15 1 2.7831 -4.0622 -3.3857 16 1 2.8487 -1.7255 -2.7407 17 6 5.7279 0.1475 -0.0747 18 6 6.2660 1.5057 0.3654 19 6 5.5359 2.5908 -0.4362 20 6 4.0773 2.6093 0.0139 21 1 4.0188 3.0098 1.0260 22 6 3.2708 3.5038 -0.9295 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5139 0.8900 26 1 2.0211 -5.4533 -1.0971 27 1 6.1263 -0.6248 0.5834 28 1 6.0535 -0.0519 -1.0955 29 1 6.0807 1.6475 1.4302 30 1 7.3367 1.5589 0.1681 31 1 5.5902 2.3619 -1.5004 32 1 5.9932 3.5614 -0.2437 33 1 2.2302 3.5285 -0.6059 34 1 3.6808 4.5136 -0.9118 35 1 3.3267 3.1067 -1.9432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260488162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:24 Heat of formation + Delta-G solvation = -36.902996 kcal Electronic energy + Delta-G solvation = -18893.567085 eV Core-core repulsion = 16083.142409 eV Total energy + Delta-G solvation = -2810.424676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.35140 -38.94368 -37.86592 -35.61864 -34.96168 -33.34257 -31.40760 -29.65123 -27.50359 -27.05656 -24.11777 -23.46345 -22.74218 -20.73528 -19.97407 -18.62734 -17.57864 -17.30736 -17.14742 -16.29375 -15.64681 -15.36029 -15.10796 -14.65404 -14.51111 -14.26941 -14.00761 -13.88232 -13.53887 -13.24978 -13.16948 -12.81008 -12.70175 -12.52749 -12.14238 -12.12645 -11.80862 -11.75028 -11.54584 -11.25148 -10.72860 -10.56089 -10.35038 -9.11039 -8.89448 -6.34996 0.07493 1.03291 1.21846 1.26530 1.30446 1.79515 2.11742 2.49170 3.14792 3.41023 3.67214 3.72603 3.82000 4.01079 4.18701 4.29796 4.52698 4.55862 4.71429 4.80442 4.83455 4.89298 4.95389 4.99104 5.02834 5.09466 5.18129 5.18628 5.36138 5.42752 5.54653 5.57726 5.77732 5.98123 6.10233 6.46272 6.69449 7.12754 7.55958 8.09213 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.010008 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.853838 B = 2796.958073 C = 3436.143814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.015 4.015 3 N -0.504 5.504 4 C 0.263 3.737 5 N -0.506 5.506 6 C 0.461 3.539 7 O -0.575 6.575 8 C -0.087 4.087 9 C -0.443 4.443 10 H 0.076 0.924 11 C 0.069 3.931 12 N -0.834 5.834 13 Si 0.954 3.046 14 H -0.265 1.265 15 H -0.267 1.267 16 H -0.276 1.276 17 C 0.084 3.916 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.018 4.018 21 H 0.105 0.895 22 C -0.126 4.126 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.292 0.708 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 16.396 -1.568 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.139 4.139 3 N -0.222 5.222 4 C 0.004 3.996 5 N -0.226 5.226 6 C 0.261 3.739 7 O -0.459 6.459 8 C -0.095 4.095 9 C -0.473 4.473 10 H 0.093 0.907 11 C -0.148 4.148 12 N -0.460 5.460 13 Si 0.780 3.220 14 H -0.190 1.190 15 H -0.193 1.193 16 H -0.201 1.201 17 C -0.038 4.038 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.038 4.038 21 H 0.123 0.877 22 C -0.184 4.184 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.690 16.116 -1.577 17.927 hybrid contribution 0.494 -1.814 -0.305 1.905 sum 8.185 14.302 -1.882 16.585 Atomic orbital electron populations 1.20050 0.88076 1.01629 1.01088 1.21339 0.97017 0.86278 1.09274 1.66938 1.06116 1.29706 1.19462 1.23279 0.86271 0.89701 1.00363 1.46104 1.09867 1.06560 1.60024 1.20154 0.90745 0.82736 0.80299 1.90653 1.65443 1.35359 1.54463 1.20434 0.89246 0.96234 1.03577 1.18767 1.12680 0.93940 1.21884 0.90652 1.26513 0.94257 0.93772 1.00261 1.69716 1.39206 1.00690 1.36436 0.85675 0.80252 0.78641 0.77456 1.19043 1.19328 1.20088 1.21943 0.77130 1.01986 1.02776 1.21870 1.02188 0.90465 1.01195 1.21788 0.92485 1.00992 0.99979 1.20173 0.95594 0.85367 1.02668 0.87703 1.21660 1.00375 0.98890 0.97438 0.90562 0.92384 0.92803 0.89781 0.90979 0.91028 0.90386 0.86230 0.91564 0.86174 0.92395 0.89054 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.11 9.34 71.23 0.67 -1.44 16 2 C -0.02 -0.74 6.91 43.08 0.30 -0.44 16 3 N -0.50 -21.42 8.87 -172.48 -1.53 -22.95 16 4 C 0.26 9.93 7.04 138.05 0.97 10.90 16 5 N -0.51 -21.30 2.98 -631.92 -1.89 -23.18 16 6 C 0.46 24.44 6.15 86.42 0.53 24.97 16 7 O -0.57 -33.32 12.30 -4.48 -0.06 -33.37 16 8 C -0.09 -4.77 4.82 -19.77 -0.10 -4.86 16 9 C -0.44 -26.27 8.68 23.29 0.20 -26.07 16 10 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 11 C 0.07 4.04 5.05 85.28 0.43 4.47 16 12 N -0.83 -49.13 13.93 21.85 0.30 -48.83 16 13 Si 0.95 49.67 24.79 68.60 1.70 51.37 16 14 H -0.26 -14.42 6.29 99.48 0.63 -13.79 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 17 C 0.08 2.69 5.80 86.26 0.50 3.20 16 18 C -0.12 -2.34 6.05 30.59 0.19 -2.16 16 19 C -0.11 -2.02 5.32 30.62 0.16 -1.85 16 20 C -0.02 -0.43 2.86 -11.53 -0.03 -0.47 16 21 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 22 C -0.13 -2.76 8.81 71.98 0.63 -2.13 16 23 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 24 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.05 2.20 8.02 -2.39 -0.02 2.18 16 26 H 0.29 15.64 8.30 -92.71 -0.77 14.87 16 27 H 0.07 2.53 7.52 -2.38 -0.02 2.51 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.08 1.49 8.11 -2.38 -0.02 1.47 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.25 8.09 -2.39 -0.02 1.24 16 32 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 1.48 7.58 -2.39 -0.02 1.46 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -73.53 280.78 3.99 -69.55 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.00 Total: 3.31 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 4.45 Total: 4.12 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -3.11 Total: -94.97 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.06 Total: -33.37 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 1.70 Total: 51.37 kcal Total: -73.53 3.99 -69.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260488162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.644 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds