Wall clock time and date at job start Mon Mar 30 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 119.11450 * 2 1 4 4 C 1.32527 * 120.77761 * 180.02562 * 3 2 1 5 5 C 1.38077 * 119.09183 * 359.77832 * 4 3 2 6 6 C 1.38699 * 118.55523 * 0.24863 * 5 4 3 7 7 C 1.50702 * 120.48174 * 179.85988 * 6 5 4 8 8 H 1.09003 * 109.46975 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46694 * 239.99821 * 7 6 5 10 10 C 1.50697 * 109.47214 * 119.99607 * 7 6 5 11 11 H 1.07994 * 120.00155 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99908 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00021 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00011 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.46912 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46828 * 120.00405 * 14 12 10 17 17 H 1.48504 * 109.46875 * 240.00294 * 14 12 10 18 18 N 1.31785 * 119.11625 * 179.97438 * 2 1 3 19 19 C 1.50360 * 121.74655 * 180.29314 * 5 4 3 20 20 O 1.42825 * 110.01248 * 344.13419 * 19 5 4 21 21 C 1.42931 * 113.40224 * 51.55696 * 20 19 5 22 22 C 1.50562 * 119.58339 * 179.53988 * 4 3 2 23 23 H 1.09004 * 109.46862 * 270.02270 * 1 2 3 24 24 H 1.08995 * 109.46658 * 30.01875 * 1 2 3 25 25 H 1.08994 * 109.46975 * 150.02097 * 1 2 3 26 26 H 1.09001 * 109.46660 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.46941 * 299.99271 * 9 7 6 28 28 H 1.08990 * 109.47417 * 60.00260 * 9 7 6 29 29 H 0.97003 * 119.99950 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.36297 * 104.26781 * 19 5 4 31 31 H 1.08998 * 109.36564 * 224.00111 * 19 5 4 32 32 H 1.09002 * 109.66823 * 169.63831 * 21 20 19 33 33 H 1.08996 * 109.75449 * 49.16543 * 21 20 19 34 34 H 1.09003 * 109.44155 * 283.26821 * 22 4 3 35 35 H 1.09004 * 109.44075 * 43.15695 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1482 1.1513 0.0000 4 6 3.4729 1.1898 -0.0005 5 6 4.1790 0.0032 0.0036 6 6 3.4711 -1.1895 0.0029 7 6 4.1978 -2.5098 0.0041 8 1 5.2733 -2.3325 0.0051 9 6 3.8134 -3.3045 -1.2456 10 6 3.8161 -3.2921 1.2342 11 1 3.1169 -2.8753 1.9439 12 6 4.3587 -4.5406 1.4531 13 7 5.2098 -5.0485 0.5885 14 14 3.8850 -5.5107 2.9775 15 1 2.9178 -4.7240 3.7842 16 1 3.2610 -6.7959 2.5723 17 1 5.0993 -5.7838 3.7876 18 7 2.1482 -1.1513 0.0005 19 6 5.6824 -0.0228 0.0098 20 8 6.1949 1.2591 -0.3563 21 6 5.6382 2.3320 0.4065 22 6 4.1779 2.5201 -0.0110 23 1 -0.3633 0.0004 1.0277 24 1 -0.3632 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5135 26 1 4.3387 -4.2596 -1.2444 27 1 2.7379 -3.4818 -1.2468 28 1 4.0895 -2.7387 -2.1352 29 1 5.5913 -5.9270 0.7423 30 1 6.0352 -0.2814 1.0082 31 1 6.0339 -0.7694 -0.7023 32 1 6.1954 3.2484 0.2116 33 1 5.6871 2.0930 1.4688 34 1 4.1392 2.9433 -1.0148 35 1 3.6853 3.1973 0.6869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260869785.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:39 Heat of formation + Delta-G solvation = -13.060381 kcal Electronic energy + Delta-G solvation = -18371.416361 eV Core-core repulsion = 15562.025579 eV Total energy + Delta-G solvation = -2809.390782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95573 -38.20025 -35.39841 -33.49452 -32.60480 -30.86891 -29.82971 -29.01424 -25.25626 -24.80276 -24.33791 -22.91065 -20.36868 -19.83015 -17.73064 -16.42106 -16.11644 -15.73045 -15.05579 -14.71666 -14.56036 -14.24826 -13.49063 -13.38886 -12.87751 -12.78448 -12.41819 -12.16925 -12.04261 -11.59179 -11.50936 -11.25000 -10.99564 -10.91714 -10.54599 -10.49611 -10.20174 -10.03201 -9.61594 -9.45506 -9.01487 -8.48546 -8.45731 -8.36789 -6.09721 -4.15356 1.42503 1.73139 3.25693 3.33881 3.39194 3.95728 4.23196 4.27173 4.40049 4.63776 4.80895 5.09414 5.16630 5.22211 5.29176 5.34816 5.58255 5.70874 5.74689 5.81304 5.82011 5.89638 5.96952 6.18649 6.21911 6.45504 6.74731 6.89170 7.03418 7.14499 7.24492 7.46975 7.67776 7.81550 7.96843 8.23738 8.79661 8.84829 9.48389 10.96449 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.007987 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.601760 B = 3504.714229 C = 4208.626853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.305 3.695 3 N -0.542 5.542 4 C 0.173 3.827 5 C -0.245 4.245 6 C 0.236 3.764 7 C 0.079 3.921 8 H 0.050 0.950 9 C -0.129 4.129 10 C -0.498 4.498 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.283 1.283 18 N -0.503 5.503 19 C 0.116 3.884 20 O -0.378 6.378 21 C 0.060 3.940 22 C -0.100 4.100 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.039 0.961 28 H 0.006 0.994 29 H 0.262 0.738 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 11.627 -1.030 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.037 3.963 3 N -0.258 5.258 4 C 0.028 3.972 5 C -0.249 4.249 6 C 0.090 3.910 7 C 0.060 3.940 8 H 0.068 0.932 9 C -0.187 4.187 10 C -0.537 4.537 11 H 0.076 0.924 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.210 1.210 18 N -0.218 5.218 19 C 0.039 3.961 20 O -0.296 6.296 21 C -0.018 4.018 22 C -0.138 4.138 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.275 11.500 -1.208 11.785 hybrid contribution 0.300 -0.616 1.057 1.259 sum -1.975 10.884 -0.151 11.063 Atomic orbital electron populations 1.20448 0.86513 1.03400 1.03271 1.23217 0.97900 0.83874 0.91316 1.68045 1.08883 1.30900 1.17988 1.20911 0.89638 0.94656 0.91969 1.21620 0.99444 0.95246 1.08638 1.22631 0.88873 0.96408 0.83049 1.18079 0.94231 0.85204 0.96495 0.93225 1.21722 1.00805 1.02277 0.93937 1.20896 1.26258 1.01414 1.05083 0.92408 1.24913 0.94854 0.97291 0.96771 1.69876 1.29979 1.17698 1.35250 0.86446 0.78309 0.79945 0.82821 1.19823 1.20825 1.20958 1.68234 1.10183 1.28796 1.14562 1.21352 0.87678 0.84930 1.02128 1.88001 1.65132 1.15172 1.61282 1.22569 0.92270 0.91320 0.95613 1.21007 0.95612 0.93252 1.03953 0.90248 0.90435 0.89854 0.89067 0.94146 0.97522 0.92790 0.90959 0.86727 0.88085 0.92579 0.88996 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.32 36.01 0.37 -0.77 16 2 C 0.30 5.96 7.64 -157.21 -1.20 4.76 16 3 N -0.54 -10.28 10.26 -7.12 -0.07 -10.36 16 4 C 0.17 3.16 6.68 -82.42 -0.55 2.61 16 5 C -0.24 -4.88 5.80 -104.68 -0.61 -5.48 16 6 C 0.24 5.36 5.42 -82.20 -0.45 4.92 16 7 C 0.08 1.94 2.38 -92.92 -0.22 1.72 16 8 H 0.05 1.23 5.84 -51.93 -0.30 0.93 16 9 C -0.13 -3.13 8.88 37.16 0.33 -2.80 16 10 C -0.50 -13.50 8.45 -34.44 -0.29 -13.79 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 14 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 N -0.50 -11.32 9.97 -6.97 -0.07 -11.39 16 19 C 0.12 2.05 5.66 35.84 0.20 2.26 16 20 O -0.38 -6.00 10.78 -35.23 -0.38 -6.38 16 21 C 0.06 0.75 6.84 37.18 0.25 1.00 16 22 C -0.10 -1.36 6.27 -27.93 -0.18 -1.53 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 28 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.12 2.05 6.94 -51.93 -0.36 1.69 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 289.00 15.07 4.36 4.36 Total: -1.00 -30.06 289.00 -7.73 -37.78 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.74 Total: -0.80 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.43 Total: -5.51 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.48 Total: -45.54 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.38 Total: -6.38 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.06 -7.73 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869785.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.725 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds