Wall clock time and date at job start Mon Mar 30 2020 04:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47034 * 2 1 4 4 C 1.38131 * 120.03850 * 265.00288 * 3 2 1 5 5 C 1.38259 * 120.07067 * 179.72221 * 4 3 2 6 6 C 1.38311 * 120.14192 * 0.25219 * 5 4 3 7 7 C 1.38085 * 120.06844 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.03484 * 85.25158 * 3 2 1 9 9 N 1.39932 * 120.07054 * 0.02626 * 8 3 2 10 10 C 1.34773 * 120.00193 * 145.55439 * 9 8 3 11 11 O 1.21296 * 119.99828 * 4.49252 * 10 9 8 12 12 C 1.50693 * 120.00254 * 184.48543 * 10 9 8 13 13 N 1.46498 * 109.47443 * 179.97438 * 12 10 9 14 14 C 1.36936 * 120.00373 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99986 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00459 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00348 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99870 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47520 * 89.99799 * 18 16 14 20 20 H 1.48498 * 109.47290 * 209.99713 * 18 16 14 21 21 H 1.48500 * 109.47161 * 329.99546 * 18 16 14 22 22 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47711 * 299.99359 * 1 2 3 24 24 H 1.08998 * 109.47639 * 60.00125 * 1 2 3 25 25 H 1.08995 * 109.47462 * 240.00181 * 2 1 3 26 26 H 1.08998 * 109.47639 * 119.99875 * 2 1 3 27 27 H 1.07994 * 119.96177 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.92837 * 180.22993 * 5 4 3 29 29 H 1.08000 * 119.95901 * 180.02562 * 6 5 4 30 30 H 1.07998 * 120.03388 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99633 * 325.54992 * 9 8 3 32 32 H 1.09001 * 109.47313 * 300.00514 * 12 10 9 33 33 H 1.08999 * 109.47069 * 60.00257 * 12 10 9 34 34 H 0.96996 * 119.99826 * 0.02562 * 13 12 10 35 35 H 0.97003 * 120.00480 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3609 2.0380 -1.1912 5 6 2.8164 3.3434 -1.1925 6 6 2.9494 4.0338 -0.0014 7 6 2.6279 3.4205 1.1933 8 6 2.1701 2.1092 1.1980 9 7 1.8435 1.4850 2.4070 10 6 2.5470 1.7653 3.5218 11 8 3.4094 2.6179 3.4963 12 6 2.2622 1.0197 4.8000 13 7 3.1536 1.5040 5.8569 14 6 3.0778 0.9690 7.1151 15 1 2.3610 0.1896 7.3283 16 6 3.9220 1.4282 8.1167 17 7 3.8495 0.9136 9.3259 18 14 5.1612 2.7765 7.7483 19 1 4.5422 4.1016 8.0056 20 1 6.3505 2.6079 8.6215 21 1 5.5763 2.6920 6.3250 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 2.2581 1.5016 -2.1229 28 1 3.0692 3.8250 -2.1256 29 1 3.3050 5.0535 -0.0059 30 1 2.7316 3.9602 2.1230 31 1 1.1106 0.8505 2.4427 32 1 1.2258 1.1853 5.0941 33 1 2.4297 -0.0460 4.6440 34 1 3.7976 2.2036 5.6654 35 1 4.4392 1.2347 10.0259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381559550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:37 Heat of formation + Delta-G solvation = 0.401067 kcal Electronic energy + Delta-G solvation = -17503.287659 eV Core-core repulsion = 14694.480609 eV Total energy + Delta-G solvation = -2808.807050 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59002 -38.58404 -35.00754 -34.49636 -33.85881 -31.45436 -30.07090 -29.30148 -26.93790 -24.03031 -23.31817 -21.98608 -20.93909 -20.19045 -18.26763 -17.53401 -16.36971 -15.97951 -15.56050 -14.82982 -14.63401 -14.33459 -14.02833 -13.78629 -13.67541 -13.32513 -12.99311 -12.43365 -12.30690 -12.26324 -11.97543 -11.73310 -11.33974 -11.14809 -11.06153 -10.84832 -10.28519 -10.12844 -9.70446 -9.44541 -8.98167 -8.78046 -8.08880 -7.32253 -5.80607 -3.18267 1.24542 1.37874 2.80291 3.13597 3.43739 3.49854 3.54851 3.77190 4.58660 4.61204 4.69961 4.92902 5.01202 5.08457 5.14938 5.29448 5.37318 5.44263 5.48062 5.52580 5.60813 5.70179 5.79324 5.95920 6.04123 6.05458 6.17307 6.30086 6.41423 6.49987 6.56807 7.05233 7.42688 7.92711 8.28522 8.38206 9.16880 9.88540 10.08089 11.36543 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.005144 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.295418 B = 5442.076679 C = 6151.379621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.113 4.113 4 C -0.103 4.103 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.121 4.121 8 C 0.156 3.844 9 N -0.678 5.678 10 C 0.508 3.492 11 O -0.516 6.516 12 C 0.143 3.857 13 N -0.745 5.745 14 C -0.253 4.253 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.930 5.930 18 Si 0.881 3.119 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.271 1.271 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.410 0.590 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.375 0.625 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 0.576 -22.787 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.121 4.121 5 C -0.158 4.158 6 C -0.126 4.126 7 C -0.141 4.141 8 C 0.061 3.939 9 N -0.324 5.324 10 C 0.297 3.703 11 O -0.389 6.389 12 C 0.012 3.988 13 N -0.394 5.394 14 C -0.383 4.383 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.577 5.577 18 Si 0.710 3.290 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.196 1.196 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.158 0.842 31 H 0.246 0.754 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.211 0.789 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.349 1.018 -22.500 23.400 hybrid contribution 0.589 0.633 -0.151 0.877 sum -5.760 1.650 -22.650 23.429 Atomic orbital electron populations 1.21776 0.94706 1.01892 1.02198 1.20492 0.96069 0.92548 1.03246 1.19682 1.03510 0.96206 0.92171 1.20787 0.99551 0.95071 0.96734 1.21070 1.01737 0.95023 0.97992 1.21052 0.99544 0.99944 0.92037 1.21378 1.00067 0.93148 0.99490 1.17652 0.99628 0.91671 0.84935 1.43680 1.35739 1.45723 1.07301 1.21620 0.80250 0.83112 0.85342 1.90651 1.32053 1.31938 1.84304 1.20447 0.96526 0.96711 0.85087 1.42545 1.42789 1.46680 1.07362 1.18971 1.17676 1.17295 0.84310 0.88964 1.24613 0.99170 0.99313 0.95315 1.69697 1.41403 1.45000 1.01563 0.86581 0.81736 0.82717 0.77948 1.20843 1.21582 1.19618 0.92096 0.92736 0.92396 0.90740 0.90902 0.86030 0.86267 0.85962 0.84179 0.75367 0.92191 0.92217 0.78864 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.82 37.15 0.37 -0.72 16 2 C -0.09 -0.76 5.47 -27.89 -0.15 -0.91 16 3 C -0.11 -1.28 5.15 -104.43 -0.54 -1.82 16 4 C -0.10 -1.06 9.68 -39.61 -0.38 -1.45 16 5 C -0.14 -1.47 10.04 -39.55 -0.40 -1.87 16 6 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 7 C -0.12 -1.78 8.70 -39.40 -0.34 -2.12 16 8 C 0.16 2.15 6.29 -83.69 -0.53 1.62 16 9 N -0.68 -9.15 4.78 -9.86 -0.05 -9.20 16 10 C 0.51 8.98 7.74 -10.99 -0.09 8.90 16 11 O -0.52 -10.98 13.08 5.54 0.07 -10.91 16 12 C 0.14 2.71 6.74 -5.20 -0.04 2.68 16 13 N -0.74 -18.63 5.38 -61.09 -0.33 -18.96 16 14 C -0.25 -7.26 10.47 -15.06 -0.16 -7.41 16 15 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 17 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 18 Si 0.88 23.18 27.74 -169.99 -4.71 18.46 16 19 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.27 -7.05 6.52 56.52 0.37 -6.68 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.41 7.32 -51.93 -0.38 0.03 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 26 H 0.07 0.67 7.42 -51.93 -0.39 0.28 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 2.34 6.20 -52.49 -0.33 2.02 16 31 H 0.41 4.22 7.06 -40.82 -0.29 3.93 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.38 9.79 4.49 -40.82 -0.18 9.60 16 35 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -34.07 294.98 -7.07 -41.15 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.53 Total: 8.11 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.75 Total: -4.54 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.40 Total: -56.71 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.07 -7.07 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381559550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.549 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds