Wall clock time and date at job start Mon Mar 30 2020 04:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47034 * 2 1 4 4 C 1.38131 * 120.03850 * 265.00288 * 3 2 1 5 5 C 1.38259 * 120.07067 * 179.72221 * 4 3 2 6 6 C 1.38311 * 120.14192 * 0.25219 * 5 4 3 7 7 C 1.38085 * 120.06844 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.03484 * 85.25158 * 3 2 1 9 9 N 1.39932 * 120.07054 * 0.02626 * 8 3 2 10 10 C 1.34773 * 120.00193 * 145.55439 * 9 8 3 11 11 O 1.21296 * 119.99828 * 4.49252 * 10 9 8 12 12 C 1.50693 * 120.00254 * 184.48543 * 10 9 8 13 13 N 1.46498 * 109.47443 * 179.97438 * 12 10 9 14 14 C 1.36936 * 120.00373 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99986 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00459 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00348 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99870 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47520 * 89.99799 * 18 16 14 20 20 H 1.48498 * 109.47290 * 209.99713 * 18 16 14 21 21 H 1.48500 * 109.47161 * 329.99546 * 18 16 14 22 22 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47711 * 299.99359 * 1 2 3 24 24 H 1.08998 * 109.47639 * 60.00125 * 1 2 3 25 25 H 1.08995 * 109.47462 * 240.00181 * 2 1 3 26 26 H 1.08998 * 109.47639 * 119.99875 * 2 1 3 27 27 H 1.07994 * 119.96177 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.92837 * 180.22993 * 5 4 3 29 29 H 1.08000 * 119.95901 * 180.02562 * 6 5 4 30 30 H 1.07998 * 120.03388 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99633 * 325.54992 * 9 8 3 32 32 H 1.09001 * 109.47313 * 300.00514 * 12 10 9 33 33 H 1.08999 * 109.47069 * 60.00257 * 12 10 9 34 34 H 0.96996 * 119.99826 * 0.02562 * 13 12 10 35 35 H 0.97003 * 120.00480 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3609 2.0380 -1.1912 5 6 2.8164 3.3434 -1.1925 6 6 2.9494 4.0338 -0.0014 7 6 2.6279 3.4205 1.1933 8 6 2.1701 2.1092 1.1980 9 7 1.8435 1.4850 2.4070 10 6 2.5470 1.7653 3.5218 11 8 3.4094 2.6179 3.4963 12 6 2.2622 1.0197 4.8000 13 7 3.1536 1.5040 5.8569 14 6 3.0778 0.9690 7.1151 15 1 2.3610 0.1896 7.3283 16 6 3.9220 1.4282 8.1167 17 7 3.8495 0.9136 9.3259 18 14 5.1612 2.7765 7.7483 19 1 4.5422 4.1016 8.0056 20 1 6.3505 2.6079 8.6215 21 1 5.5763 2.6920 6.3250 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 2.2581 1.5016 -2.1229 28 1 3.0692 3.8250 -2.1256 29 1 3.3050 5.0535 -0.0059 30 1 2.7316 3.9602 2.1230 31 1 1.1106 0.8505 2.4427 32 1 1.2258 1.1853 5.0941 33 1 2.4297 -0.0460 4.6440 34 1 3.7976 2.2036 5.6654 35 1 4.4392 1.2347 10.0259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381559550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:36 Heat of formation + Delta-G solvation = -22.496528 kcal Electronic energy + Delta-G solvation = -17504.280573 eV Core-core repulsion = 14694.480609 eV Total energy + Delta-G solvation = -2809.799964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74446 -39.73602 -36.51380 -35.98217 -34.76645 -33.54416 -31.13988 -30.23434 -28.54603 -24.95181 -24.71145 -23.46853 -21.82123 -21.52569 -20.13559 -18.68528 -17.84867 -16.96628 -16.74925 -16.48760 -16.21826 -15.72429 -15.08997 -14.91491 -14.63979 -14.52885 -14.27550 -14.07363 -13.80235 -13.46772 -13.08122 -12.92204 -12.73941 -12.58403 -12.19375 -11.89729 -11.88708 -11.81519 -11.35830 -11.11574 -10.87232 -9.69151 -9.43633 -9.08435 -8.09031 -5.43430 0.28995 0.45153 1.34640 1.36254 1.46045 1.48186 1.94487 2.43223 2.84971 3.23351 3.60559 3.70006 3.83376 3.92823 4.20337 4.31827 4.47867 4.49248 4.53547 4.59487 4.62407 4.66895 4.78377 5.07325 5.12147 5.14972 5.37811 5.41813 5.46339 5.60549 5.62553 5.67359 6.10022 6.13739 6.32829 6.98166 7.03956 7.74032 7.91879 9.11177 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.005144 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.295418 B = 5442.076679 C = 6151.379621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.109 4.109 4 C -0.103 4.103 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.148 4.148 8 C 0.128 3.872 9 N -0.656 5.656 10 C 0.512 3.488 11 O -0.557 6.557 12 C 0.136 3.864 13 N -0.757 5.757 14 C -0.236 4.236 15 H 0.077 0.923 16 C -0.049 4.049 17 N -0.973 5.973 18 Si 0.941 3.059 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.269 1.269 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.425 0.575 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.369 0.631 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 0.180 -25.908 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.121 4.121 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.169 4.169 8 C 0.034 3.966 9 N -0.303 5.303 10 C 0.301 3.699 11 O -0.435 6.435 12 C 0.007 3.993 13 N -0.406 5.406 14 C -0.367 4.367 15 H 0.095 0.905 16 C -0.242 4.242 17 N -0.623 5.623 18 Si 0.769 3.231 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.195 1.195 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.265 0.735 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.204 0.796 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.961 0.597 -25.694 26.626 hybrid contribution 0.652 0.705 0.641 1.154 sum -6.309 1.302 -25.053 25.868 Atomic orbital electron populations 1.21767 0.93519 1.02863 1.02185 1.20571 0.97009 0.90856 1.03894 1.20004 1.02377 0.97288 0.91463 1.21238 0.98171 0.95111 0.97578 1.21459 1.00074 0.95150 0.98380 1.21264 0.99704 1.00795 0.91964 1.21324 1.02118 0.94066 0.99350 1.17844 1.01464 0.91843 0.85483 1.43334 1.35248 1.45297 1.06410 1.21300 0.80168 0.82523 0.85901 1.90644 1.34138 1.33729 1.84952 1.20683 0.96354 0.97745 0.84489 1.42608 1.43811 1.46630 1.07519 1.19044 1.16091 1.15861 0.85685 0.90519 1.25281 1.01548 1.01927 0.95397 1.69822 1.42920 1.46993 1.02552 0.85616 0.79649 0.80226 0.77571 1.20550 1.21338 1.19501 0.90651 0.93239 0.91977 0.88979 0.91421 0.82777 0.83223 0.84801 0.87201 0.73532 0.89862 0.89976 0.79581 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.82 71.98 0.71 -0.98 16 2 C -0.09 -1.24 5.47 29.85 0.16 -1.08 16 3 C -0.11 -2.19 5.15 -19.74 -0.10 -2.30 16 4 C -0.10 -1.75 9.68 22.25 0.22 -1.54 16 5 C -0.13 -2.39 10.04 22.29 0.22 -2.17 16 6 C -0.12 -2.78 10.04 22.25 0.22 -2.55 16 7 C -0.15 -4.40 8.70 22.39 0.19 -4.21 16 8 C 0.13 3.39 6.29 38.15 0.24 3.63 16 9 N -0.66 -17.07 4.78 -303.50 -1.45 -18.52 16 10 C 0.51 17.94 7.74 87.66 0.68 18.61 16 11 O -0.56 -24.14 13.08 -3.08 -0.04 -24.18 16 12 C 0.14 5.03 6.74 85.63 0.58 5.61 16 13 N -0.76 -37.68 5.38 -347.19 -1.87 -39.55 16 14 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 15 H 0.08 4.58 8.06 -2.91 -0.02 4.56 16 16 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 17 N -0.97 -62.39 13.97 21.65 0.30 -62.09 16 18 Si 0.94 48.67 27.74 68.60 1.90 50.57 16 19 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 21 H -0.27 -13.74 6.52 99.48 0.65 -13.09 16 22 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.05 0.62 7.32 -2.39 -0.02 0.60 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 1.03 8.05 -2.39 -0.02 1.01 16 26 H 0.07 1.06 7.42 -2.39 -0.02 1.04 16 27 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 29 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.11 3.89 6.20 -2.91 -0.02 3.87 16 31 H 0.43 8.02 7.06 -92.71 -0.65 7.36 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.37 19.23 4.49 -92.71 -0.42 18.82 16 35 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -74.50 294.98 3.29 -71.21 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.02 Total: 24.73 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 4.47 Total: -2.17 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -3.02 Total: -120.16 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.04 Total: -24.18 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.90 Total: 50.57 kcal Total: -74.50 3.29 -71.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381559550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.710 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds