Wall clock time and date at job start Mon Mar 30 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35348 * 119.66087 * 2 1 4 4 C 1.41193 * 119.26797 * 179.97438 * 3 2 1 5 5 N 1.34666 * 120.66885 * 179.97438 * 4 3 2 6 6 C 1.32303 * 120.00065 * 5.35319 * 5 4 3 7 7 O 1.21713 * 120.00258 * 55.43506 * 6 5 4 8 8 C 1.50704 * 119.99810 * 235.44459 * 6 5 4 9 9 H 1.09000 * 109.46529 * 299.99559 * 8 6 5 10 10 C 1.52997 * 109.47132 * 59.99365 * 8 6 5 11 11 C 1.50703 * 109.47047 * 179.97438 * 8 6 5 12 12 H 1.07992 * 119.99827 * 359.97438 * 11 8 6 13 13 C 1.37871 * 119.99660 * 180.02562 * 11 8 6 14 14 N 1.31514 * 119.99918 * 179.97438 * 13 11 8 15 15 Si 1.86805 * 120.00443 * 359.97438 * 13 11 8 16 16 H 1.48497 * 109.46963 * 90.00114 * 15 13 11 17 17 H 1.48497 * 109.47257 * 210.00387 * 15 13 11 18 18 H 1.48506 * 109.46792 * 330.00402 * 15 13 11 19 19 C 1.41183 * 118.65915 * 0.27249 * 4 3 2 20 20 C 1.50707 * 120.36382 * 179.70587 * 19 4 3 21 21 C 1.35345 * 119.26964 * 359.42800 * 19 4 3 22 22 N 1.35434 * 120.68155 * 0.60547 * 21 19 4 23 23 H 0.97000 * 119.28278 * 179.69012 * 22 21 19 24 24 H 1.09000 * 109.47184 * 89.99889 * 1 2 3 25 25 H 1.09002 * 109.46842 * 210.00003 * 1 2 3 26 26 H 1.09004 * 109.47095 * 330.00206 * 1 2 3 27 27 H 1.08002 * 120.36702 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.47096 * 60.00363 * 10 8 6 29 29 H 1.09000 * 109.47590 * 300.00334 * 10 8 6 30 30 H 1.09003 * 109.46937 * 179.97438 * 10 8 6 31 31 H 0.96999 * 120.00230 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47221 * 90.00194 * 20 19 4 33 33 H 1.09000 * 109.47078 * 210.00210 * 20 19 4 34 34 H 1.08996 * 109.47015 * 330.00414 * 20 19 4 35 35 H 1.08003 * 119.66031 * 180.27279 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1768 1.1761 0.0000 4 6 3.5887 1.1664 0.0006 5 7 4.2835 2.3200 0.0000 6 6 3.6476 3.4754 0.1059 7 8 2.9018 3.6756 1.0468 8 6 3.8464 4.5434 -0.9386 9 1 4.8989 4.8244 -0.9749 10 6 3.4142 4.0073 -2.3048 11 6 3.0154 5.7505 -0.5873 12 1 2.4041 5.7447 0.3030 13 6 3.0348 6.8618 -1.4030 14 7 2.3092 7.9150 -1.0968 15 14 4.0916 6.8716 -2.9434 16 1 3.3021 6.3517 -4.0886 17 1 4.5301 8.2602 -3.2341 18 1 5.2828 6.0103 -2.7318 19 6 4.2573 -0.0770 -0.0048 20 6 5.7633 -0.1322 -0.0111 21 6 3.5308 -1.2190 0.0015 22 7 2.1771 -1.1769 0.0005 23 1 1.6766 -2.0078 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6372 2.1117 -0.0004 28 1 2.3617 3.7261 -2.2685 29 1 4.0149 3.1340 -2.5592 30 1 3.5577 4.7799 -3.0602 31 1 2.3231 8.6971 -1.6705 32 1 6.1306 -0.1476 1.0150 33 1 6.0917 -1.0337 -0.5282 34 1 6.1568 0.7450 -0.5246 35 1 4.0358 -2.1737 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597422344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:33 Heat of formation + Delta-G solvation = 20.979363 kcal Electronic energy + Delta-G solvation = -17998.928520 eV Core-core repulsion = 15191.013812 eV Total energy + Delta-G solvation = -2807.914708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86609 -38.54249 -35.11476 -33.65114 -33.45898 -31.40270 -30.71128 -28.83902 -25.94950 -24.92613 -24.34929 -22.37851 -21.30119 -18.40558 -18.13629 -16.82168 -16.56079 -15.63156 -15.24957 -14.87235 -14.75791 -13.76231 -13.54444 -13.36407 -13.13713 -13.03303 -12.63421 -12.48177 -12.31983 -12.11852 -12.01485 -11.76051 -11.41732 -10.82609 -10.59397 -10.40257 -10.14228 -9.46445 -9.29915 -9.22471 -8.88694 -8.42817 -8.13921 -7.07324 -5.90544 -3.88721 1.09235 1.35233 2.79579 3.22897 3.35594 3.46768 3.50045 3.99606 4.33737 4.50332 4.53656 4.83817 5.05521 5.15041 5.19351 5.23825 5.40927 5.64341 5.67048 5.78904 5.85519 5.93492 6.16806 6.28744 6.40993 6.51027 6.63492 6.65643 6.85527 6.87968 7.00632 7.33054 7.45047 7.83460 8.40329 8.69915 9.27477 9.35878 9.71052 11.22698 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.006440 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.578388 B = 4347.048985 C = 4759.710604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.147 3.853 3 C -0.235 4.235 4 C 0.295 3.705 5 N -0.619 5.619 6 C 0.503 3.497 7 O -0.523 6.523 8 C -0.007 4.007 9 H 0.053 0.947 10 C -0.135 4.135 11 C -0.502 4.502 12 H 0.090 0.910 13 C 0.068 3.932 14 N -0.902 5.902 15 Si 0.883 3.117 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.265 1.265 19 C -0.160 4.160 20 C -0.087 4.087 21 C 0.109 3.891 22 N -0.590 5.590 23 H 0.414 0.586 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -24.929 -1.074 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.036 3.964 3 C -0.262 4.262 4 C 0.134 3.866 5 N -0.353 5.353 6 C 0.292 3.708 7 O -0.399 6.399 8 C -0.029 4.029 9 H 0.070 0.930 10 C -0.192 4.192 11 C -0.541 4.541 12 H 0.108 0.892 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.714 3.286 16 H -0.207 1.207 17 H -0.224 1.224 18 H -0.190 1.190 19 C -0.168 4.168 20 C -0.145 4.145 21 C -0.020 4.020 22 N -0.196 5.196 23 H 0.249 0.751 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.168 0.832 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.200 -24.087 -0.658 24.097 hybrid contribution -0.304 -0.017 -0.923 0.972 sum -0.504 -24.104 -1.581 24.161 Atomic orbital electron populations 1.21006 0.88124 1.04625 1.04064 1.20247 0.94563 0.85497 0.96126 1.21695 0.95304 0.97957 1.11273 1.18698 0.89328 0.91584 0.86967 1.68629 1.37401 0.98507 1.30746 1.21730 0.74606 0.88131 0.86332 1.90630 1.32422 1.84239 1.32654 1.19261 0.99306 0.93751 0.90559 0.92963 1.21962 1.00377 0.98892 0.97992 1.21048 1.26148 0.95854 1.11029 0.89183 1.24973 0.95239 0.95381 0.97624 1.69899 1.40771 1.04851 1.38580 0.86913 0.81685 0.76070 0.83956 1.20712 1.22432 1.19048 1.19341 0.97406 0.90205 1.09873 1.20393 0.89264 1.02667 1.02151 1.21499 0.82261 0.99815 0.98427 1.40818 1.05937 1.08299 1.64512 0.75066 0.89519 0.90877 0.88738 0.83183 0.93312 0.94587 0.93605 0.92811 0.91729 0.92518 0.89913 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.07 36.00 0.36 -0.54 16 2 C 0.15 1.58 6.80 -82.03 -0.56 1.03 16 3 C -0.24 -3.92 8.52 -39.49 -0.34 -4.25 16 4 C 0.30 5.36 6.53 -84.38 -0.55 4.81 16 5 N -0.62 -13.94 9.32 -10.39 -0.10 -14.04 16 6 C 0.50 13.28 5.62 -12.07 -0.07 13.21 16 7 O -0.52 -15.19 14.70 5.18 0.08 -15.11 16 8 C -0.01 -0.20 2.30 -92.92 -0.21 -0.41 16 9 H 0.05 1.46 7.20 -51.93 -0.37 1.09 16 10 C -0.13 -3.26 8.58 37.16 0.32 -2.95 16 11 C -0.50 -15.90 8.96 -34.44 -0.31 -16.21 16 12 H 0.09 3.18 6.99 -52.49 -0.37 2.81 16 13 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 14 N -0.90 -29.44 13.96 55.43 0.77 -28.66 16 15 Si 0.88 23.30 24.37 -169.99 -4.14 19.15 16 16 H -0.28 -7.09 6.87 56.52 0.39 -6.70 16 17 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 18 H -0.27 -6.75 6.53 56.52 0.37 -6.39 16 19 C -0.16 -2.07 5.89 -104.53 -0.62 -2.69 16 20 C -0.09 -1.00 9.81 36.01 0.35 -0.65 16 21 C 0.11 0.88 10.82 -16.99 -0.18 0.70 16 22 N -0.59 -4.26 5.23 -9.30 -0.05 -4.31 16 23 H 0.41 1.19 8.76 -40.82 -0.36 0.83 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.15 3.01 6.42 -52.49 -0.34 2.67 16 28 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 29 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 31 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.08 1.17 7.57 -51.93 -0.39 0.78 16 35 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -40.68 290.78 -5.50 -46.18 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.55 Total: -1.67 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.90 Total: -5.92 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.63 Total: -47.01 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.14 Total: 19.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -40.68 -5.50 -46.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597422344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.161 kcal (2) G-P(sol) polarization free energy of solvation -40.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds