Wall clock time and date at job start Mon Mar 30 2020 03:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38542 * 120.82099 * 2 1 4 4 C 1.38221 * 119.24054 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.92115 * 359.97438 * 4 3 2 6 6 C 1.31794 * 121.79568 * 359.97438 * 5 4 3 7 7 C 1.38882 * 120.66278 * 0.02562 * 6 5 4 8 8 N 1.39948 * 120.49143 * 179.97438 * 7 6 5 9 9 C 1.46502 * 120.00508 * 95.37485 * 8 7 6 10 10 C 1.34780 * 119.99643 * 275.37045 * 8 7 6 11 11 O 1.21285 * 119.99946 * 175.54442 * 10 8 7 12 12 C 1.50700 * 120.00211 * 355.55609 * 10 8 7 13 13 H 1.09002 * 109.47393 * 47.93321 * 12 10 8 14 14 C 1.53000 * 109.46868 * 287.93925 * 12 10 8 15 15 C 1.50695 * 109.47425 * 167.93862 * 12 10 8 16 16 H 1.08004 * 120.00003 * 5.68351 * 15 12 10 17 17 C 1.37874 * 120.00224 * 185.68135 * 15 12 10 18 18 N 1.31514 * 120.00432 * 191.36510 * 17 15 12 19 19 Si 1.86802 * 119.99698 * 11.37221 * 17 15 12 20 20 H 1.48496 * 109.47379 * 94.94517 * 19 17 15 21 21 H 1.48501 * 109.46909 * 214.94561 * 19 17 15 22 22 H 1.48499 * 109.47254 * 334.94471 * 19 17 15 23 23 H 1.09007 * 109.46841 * 88.20255 * 1 2 3 24 24 H 1.09007 * 109.46884 * 208.19776 * 1 2 3 25 25 H 1.08996 * 109.47516 * 328.19997 * 1 2 3 26 26 H 1.08006 * 120.37737 * 359.74282 * 3 2 1 27 27 H 1.08006 * 119.54035 * 179.97438 * 4 3 2 28 28 H 1.08000 * 119.66746 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47335 * 94.93390 * 9 8 7 30 30 H 1.08995 * 109.46872 * 214.93910 * 9 8 7 31 31 H 1.08995 * 109.46526 * 334.93456 * 9 8 7 32 32 H 1.08999 * 109.47130 * 71.34120 * 14 12 10 33 33 H 1.09004 * 109.47439 * 191.34096 * 14 12 10 34 34 H 1.09001 * 109.47007 * 311.34127 * 14 12 10 35 35 H 0.96992 * 120.00188 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1898 0.0000 4 6 3.5985 1.1516 -0.0005 5 7 4.2448 0.0020 -0.0005 6 6 3.6086 -1.1522 0.0005 7 6 2.2204 -1.1958 0.0010 8 7 1.5485 -2.4235 0.0016 9 6 1.0931 -3.0088 1.2650 10 6 1.3204 -3.0673 -1.1604 11 8 0.8108 -4.1678 -1.1539 12 6 1.6987 -2.4197 -2.4675 13 1 2.7156 -2.0330 -2.4006 14 6 0.7343 -1.2697 -2.7648 15 6 1.6208 -3.4394 -3.5744 16 1 1.2395 -4.4292 -3.3709 17 6 2.0364 -3.1088 -4.8467 18 7 1.7663 -3.9084 -5.8553 19 14 2.9834 -1.5252 -5.1380 20 1 4.4409 -1.8090 -5.1171 21 1 2.6081 -0.9598 -6.4589 22 1 2.6541 -0.5478 -4.0696 23 1 -0.3633 0.0322 -1.0272 24 1 -0.3633 -0.9058 0.4856 25 1 -0.3634 0.8734 0.5415 26 1 1.6965 2.1362 -0.0042 27 1 4.1568 2.0763 -0.0010 28 1 4.1724 -2.0734 0.0000 29 1 0.0528 -2.7338 1.4387 30 1 1.1783 -4.0942 1.2141 31 1 1.7094 -2.6339 2.0820 32 1 0.9316 -0.4441 -2.0810 33 1 0.8762 -0.9327 -3.7917 34 1 -0.2919 -1.6129 -2.6335 35 1 2.0590 -3.6760 -6.7504 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597516675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:11 Heat of formation + Delta-G solvation = 12.177327 kcal Electronic energy + Delta-G solvation = -18803.953140 eV Core-core repulsion = 15995.656747 eV Total energy + Delta-G solvation = -2808.296393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78173 -38.80414 -35.43676 -33.98840 -33.35593 -31.26226 -30.19811 -28.12971 -26.52479 -25.12606 -23.69878 -22.28211 -21.81993 -19.13346 -17.00258 -16.75678 -16.52570 -16.17969 -15.66279 -14.60636 -14.50046 -14.07618 -14.06717 -13.43513 -13.08237 -12.94041 -12.70890 -12.65504 -12.40374 -12.19332 -11.79225 -11.58916 -11.53618 -10.99064 -10.57188 -10.37856 -9.74393 -9.60641 -9.43200 -9.27705 -9.12071 -8.64176 -8.49280 -8.39406 -6.08267 -4.05924 1.07585 1.25565 3.23927 3.30593 3.34374 3.37188 3.38685 3.77705 4.39431 4.54038 4.71168 4.74758 5.06079 5.11135 5.21216 5.39658 5.45394 5.53998 5.65437 5.68391 5.76913 5.95575 5.98895 6.07356 6.17845 6.29410 6.42161 6.46913 6.55967 6.83096 6.88902 7.16737 7.52338 7.86288 8.02330 8.50180 8.90304 9.11526 9.53010 11.04476 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.010110 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.684112 B = 2768.829376 C = 3417.156612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.035 4.035 3 C -0.171 4.171 4 C 0.097 3.903 5 N -0.481 5.481 6 C 0.108 3.892 7 C 0.099 3.901 8 N -0.591 5.591 9 C 0.089 3.911 10 C 0.535 3.465 11 O -0.517 6.517 12 C 0.005 3.995 13 H 0.042 0.958 14 C -0.144 4.144 15 C -0.510 4.510 16 H 0.091 0.909 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.859 3.141 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.254 1.254 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 11.922 14.036 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.044 4.044 3 C -0.191 4.191 4 C -0.060 4.060 5 N -0.190 5.190 6 C -0.050 4.050 7 C 0.006 3.994 8 N -0.325 5.325 9 C -0.052 4.052 10 C 0.327 3.673 11 O -0.389 6.389 12 C -0.017 4.017 13 H 0.060 0.940 14 C -0.202 4.202 15 C -0.548 4.548 16 H 0.109 0.891 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.686 3.314 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.179 1.179 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.616 11.221 13.819 17.812 hybrid contribution -0.307 0.890 -0.344 1.003 sum 0.309 12.111 13.475 18.121 Atomic orbital electron populations 1.21055 0.90002 1.03051 1.04028 1.20624 0.97264 0.92340 0.94221 1.21965 0.95444 0.98214 1.03467 1.22746 0.91736 0.96318 0.95153 1.67709 1.40646 0.98148 1.12537 1.23148 0.90956 0.96608 0.94283 1.18432 0.91839 0.85965 1.03211 1.45602 1.59531 1.19607 1.07773 1.21594 0.98925 1.00101 0.84623 1.21545 0.76242 0.84923 0.84630 1.90591 1.42179 1.19634 1.86540 1.19175 0.96123 0.95753 0.90619 0.93994 1.22380 0.99721 0.96942 1.01141 1.20873 1.43343 0.99582 0.91004 0.89088 1.24905 0.95482 0.96433 0.95728 1.69929 1.45153 1.38097 0.99604 0.87272 0.80982 0.85004 0.78170 1.20484 1.21100 1.17869 0.89225 0.90839 0.91222 0.84636 0.82692 0.82509 0.93092 0.90347 0.91775 0.94380 0.92324 0.93275 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.35 36.01 0.34 -1.15 16 2 C -0.04 -0.48 4.12 -104.13 -0.43 -0.91 16 3 C -0.17 -1.98 9.82 -39.48 -0.39 -2.37 16 4 C 0.10 1.20 11.17 -17.54 -0.20 1.00 16 5 N -0.48 -7.26 10.35 -13.09 -0.14 -7.40 16 6 C 0.11 1.70 10.57 -17.33 -0.18 1.52 16 7 C 0.10 1.55 3.49 -83.54 -0.29 1.26 16 8 N -0.59 -10.15 2.15 -120.71 -0.26 -10.41 16 9 C 0.09 1.23 9.99 59.85 0.60 1.82 16 10 C 0.54 11.89 6.86 -10.98 -0.08 11.81 16 11 O -0.52 -13.24 15.17 5.55 0.08 -13.15 16 12 C 0.00 0.12 1.47 -92.93 -0.14 -0.02 16 13 H 0.04 1.01 5.86 -51.93 -0.30 0.70 16 14 C -0.14 -3.07 7.10 37.16 0.26 -2.80 16 15 C -0.51 -14.85 8.82 -34.44 -0.30 -15.15 16 16 H 0.09 3.00 7.05 -52.48 -0.37 2.63 16 17 C 0.08 2.23 5.34 -17.82 -0.10 2.14 16 18 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16 19 Si 0.86 21.18 25.69 -169.99 -4.37 16.82 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.25 -5.84 5.40 56.52 0.31 -5.53 16 23 H 0.09 1.15 5.90 -51.92 -0.31 0.85 16 24 H 0.07 0.91 6.24 -51.92 -0.32 0.58 16 25 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 26 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 27 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 29 H 0.05 0.63 7.26 -51.93 -0.38 0.26 16 30 H 0.08 1.16 7.51 -51.93 -0.39 0.77 16 31 H 0.06 0.71 8.01 -51.93 -0.42 0.30 16 32 H 0.04 0.69 3.52 -51.93 -0.18 0.50 16 33 H 0.06 1.31 4.95 -51.93 -0.26 1.05 16 34 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -33.94 279.99 -4.85 -38.79 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.27 Total: 0.77 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.90 Total: -2.84 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.38 Total: -44.60 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.37 Total: 16.82 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.94 -4.85 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597516675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.969 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds