Wall clock time and date at job start Mon Mar 30 2020 03:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36773 * 125.80517 * 2 1 4 4 C 1.47264 * 126.93605 * 359.97438 * 3 2 1 5 5 O 1.21622 * 120.00376 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99549 * 180.02562 * 4 3 2 7 7 C 1.47068 * 136.05958 * 359.62665 * 6 4 3 8 8 C 1.53244 * 88.08615 * 207.20452 * 7 6 4 9 9 C 1.50693 * 114.33003 * 220.47161 * 8 7 6 10 10 H 1.07997 * 119.99992 * 93.75840 * 9 8 7 11 11 C 1.37878 * 119.99746 * 273.75980 * 9 8 7 12 12 N 1.31517 * 119.99704 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00409 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47121 * 89.99634 * 13 11 9 15 15 H 1.48497 * 109.47176 * 209.99802 * 13 11 9 16 16 H 1.48499 * 109.47004 * 330.00197 * 13 11 9 17 17 C 1.47075 * 136.05666 * 180.02562 * 6 4 3 18 18 C 1.46684 * 106.11868 * 180.02562 * 3 2 1 19 19 C 1.34490 * 106.33141 * 359.77129 * 18 3 2 20 20 N 1.34665 * 125.80099 * 180.02562 * 2 1 3 21 21 C 1.46499 * 124.85123 * 359.94836 * 20 2 1 22 22 H 1.09000 * 109.47213 * 270.00226 * 1 2 3 23 23 H 1.08998 * 109.47005 * 30.00616 * 1 2 3 24 24 H 1.09004 * 109.46851 * 150.00396 * 1 2 3 25 25 H 1.09000 * 113.47099 * 321.93836 * 7 6 4 26 26 H 1.09003 * 113.46409 * 92.38056 * 7 6 4 27 27 H 1.09000 * 114.19264 * 87.72427 * 8 7 6 28 28 H 0.97001 * 119.99798 * 179.97438 * 12 11 9 29 29 H 1.09006 * 113.46250 * 267.62388 * 17 6 4 30 30 H 1.09001 * 113.46541 * 38.05626 * 17 6 4 31 31 H 1.07995 * 126.83314 * 180.02562 * 18 3 2 32 32 H 1.07996 * 125.57217 * 180.21391 * 19 18 3 33 33 H 1.09002 * 109.47391 * 89.99605 * 21 20 2 34 34 H 1.09001 * 109.46813 * 329.99662 * 21 20 2 35 35 H 1.09004 * 109.47041 * 209.99789 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0006 6 7 2.7850 3.5053 -0.0010 7 6 4.2532 3.5903 0.0055 8 6 4.1201 4.9506 0.6986 9 6 5.0867 5.9961 0.2051 10 1 4.7903 6.6792 -0.5772 11 6 6.3494 6.0805 0.7522 12 7 7.1932 6.9925 0.3211 13 14 6.8623 4.8985 2.1047 14 1 7.4757 3.6894 1.4990 15 1 7.8495 5.5619 2.9938 16 1 5.6693 4.5045 2.8964 17 6 2.7543 4.9757 -0.0011 18 6 3.6882 0.6151 -0.0006 19 6 3.6095 -0.7275 0.0042 20 7 2.2947 -1.0922 -0.0005 21 6 1.8094 -2.4745 0.0000 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 4.7292 2.8325 0.6279 26 1 4.6888 3.6521 -0.9918 27 1 4.0640 4.8945 1.7857 28 1 8.0815 7.0522 0.7063 29 1 2.7862 5.4104 -1.0002 30 1 1.9583 5.3933 0.6155 31 1 4.5890 1.2109 -0.0004 32 1 4.4497 -1.4060 0.0084 33 1 1.6882 -2.8174 -1.0276 34 1 0.8497 -2.5223 0.5146 35 1 2.5292 -3.1121 0.5133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598025166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:02 Heat of formation + Delta-G solvation = 52.879800 kcal Electronic energy + Delta-G solvation = -17842.371659 eV Core-core repulsion = 15035.840258 eV Total energy + Delta-G solvation = -2806.531401 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23748 -39.21282 -36.92998 -32.88344 -32.52400 -31.50768 -29.61027 -26.89565 -26.28562 -25.01033 -24.83265 -21.74192 -20.03637 -19.20912 -17.99074 -17.17190 -16.73455 -15.69123 -15.62283 -15.00346 -14.81598 -13.92262 -13.78981 -13.41396 -13.05403 -12.98833 -12.75216 -12.62306 -12.45723 -12.14673 -12.04790 -11.65439 -11.64334 -11.42157 -10.87133 -10.53178 -9.93185 -9.68231 -9.27440 -9.02235 -8.60866 -8.51220 -8.13486 -7.75849 -6.15480 -4.17578 1.97443 2.57483 2.80186 3.24895 3.33844 3.36944 3.73404 4.03496 4.35917 4.55234 4.78730 4.88727 4.98077 5.08461 5.11395 5.26099 5.34191 5.62008 5.71268 5.85277 5.94326 6.06083 6.09161 6.24441 6.29051 6.39720 6.49478 6.54267 6.71714 6.92237 7.18737 7.27418 7.29799 7.62172 8.40931 8.57056 8.87655 8.91896 9.45748 10.96650 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.031257 B = 0.006015 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.581441 B = 4654.023003 C = 5319.465223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.221 4.221 4 C 0.609 3.391 5 O -0.572 6.572 6 N -0.638 5.638 7 C 0.088 3.912 8 C -0.016 4.016 9 C -0.508 4.508 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.872 3.128 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.116 3.884 18 C -0.164 4.164 19 C -0.027 4.027 20 N -0.450 5.450 21 C 0.071 3.929 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.266 0.734 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -18.528 0.064 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.231 4.231 4 C 0.401 3.599 5 O -0.454 6.454 6 N -0.370 5.370 7 C -0.035 4.035 8 C -0.035 4.035 9 C -0.546 4.546 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.532 5.532 13 Si 0.699 3.301 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.006 4.006 18 C -0.188 4.188 19 C -0.152 4.152 20 N -0.127 5.127 21 C -0.071 4.071 22 H 0.092 0.908 23 H 0.119 0.881 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.270 -18.821 0.077 20.558 hybrid contribution 0.712 -0.787 0.620 1.229 sum -7.557 -19.608 0.697 21.025 Atomic orbital electron populations 1.20510 0.87278 1.03797 1.03079 1.20254 0.93603 0.85146 1.03294 1.20182 0.93178 0.92004 1.17699 1.16842 0.84090 0.83109 0.75825 1.90659 1.16343 1.84297 1.54128 1.49601 1.08662 1.07483 1.71301 1.23810 0.78738 0.99646 1.01330 1.20887 0.93209 0.92922 0.96502 1.20790 0.96580 1.15517 1.21729 0.90206 1.24988 0.96402 0.94939 0.96264 1.69898 1.07008 1.33677 1.42590 0.86895 0.78905 0.81527 0.82740 1.19933 1.21270 1.18623 1.23071 0.98798 0.78036 1.00681 1.22416 0.96538 0.93436 1.06409 1.21673 0.85218 0.96255 1.12101 1.43496 1.06044 1.05846 1.57327 1.22027 1.01505 0.80390 1.03207 0.90811 0.88067 0.92327 0.92541 0.89833 0.91643 0.92436 0.90349 0.92111 0.83164 0.81769 0.90947 0.89870 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.26 36.00 0.33 -0.79 16 2 C 0.09 1.39 6.89 -81.88 -0.56 0.83 16 3 C -0.22 -3.99 6.29 -103.35 -0.65 -4.64 16 4 C 0.61 12.80 8.06 -12.59 -0.10 12.70 16 5 O -0.57 -12.97 15.59 5.26 0.08 -12.89 16 6 N -0.64 -13.45 3.69 -186.70 -0.69 -14.14 16 7 C 0.09 1.81 6.27 -8.63 -0.05 1.76 16 8 C -0.02 -0.36 2.98 -91.40 -0.27 -0.63 16 9 C -0.51 -13.46 9.38 -34.44 -0.32 -13.79 16 10 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 11 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 13 Si 0.87 20.37 27.42 -169.99 -4.66 15.71 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.26 -5.93 6.22 56.52 0.35 -5.58 16 17 C 0.12 2.46 8.19 -8.51 -0.07 2.39 16 18 C -0.16 -2.62 10.11 -37.50 -0.38 -3.00 16 19 C -0.03 -0.34 11.34 -16.82 -0.19 -0.54 16 20 N -0.45 -5.44 3.09 -119.88 -0.37 -5.81 16 21 C 0.07 0.49 10.61 59.85 0.63 1.13 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.10 1.51 6.47 -51.93 -0.34 1.17 16 24 H 0.06 0.55 7.58 -51.93 -0.39 0.15 16 25 H 0.06 1.10 6.17 -51.93 -0.32 0.78 16 26 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 27 H 0.07 1.53 6.50 -51.93 -0.34 1.19 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.15 2.38 5.50 -52.49 -0.29 2.09 16 32 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.48 7.49 -51.93 -0.39 0.09 16 35 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 LS Contribution 291.90 15.07 4.40 4.40 Total: -1.00 -32.37 291.90 -6.83 -39.20 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.63 Total: 1.45 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.73 Total: -2.56 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.29 Total: -45.31 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.66 Total: 15.71 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.37 -6.83 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.081 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds