Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35344 * 119.66034 * 2 1 4 4 C 1.41193 * 119.26714 * 179.97438 * 3 2 1 5 5 N 1.34664 * 120.66884 * 179.97438 * 4 3 2 6 6 C 1.32296 * 120.00269 * 185.34641 * 5 4 3 7 7 O 1.21717 * 119.99987 * 55.45169 * 6 5 4 8 8 C 1.50700 * 120.00539 * 235.45637 * 6 5 4 9 9 H 1.09004 * 109.46787 * 299.99803 * 8 6 5 10 10 C 1.52999 * 109.47323 * 59.99547 * 8 6 5 11 11 C 1.50699 * 109.47565 * 180.02562 * 8 6 5 12 12 H 1.08005 * 119.99655 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00242 * 179.97438 * 11 8 6 14 14 N 1.31513 * 119.99877 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00106 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47056 * 90.00062 * 15 13 11 17 17 H 1.48502 * 109.47265 * 209.99879 * 15 13 11 18 18 H 1.48497 * 109.47171 * 330.00081 * 15 13 11 19 19 C 1.41191 * 118.66150 * 0.27483 * 4 3 2 20 20 C 1.35349 * 119.26487 * 359.44345 * 19 4 3 21 21 C 1.50694 * 119.65869 * 180.25311 * 20 19 4 22 22 N 1.35426 * 120.68067 * 0.56658 * 20 19 4 23 23 H 0.97004 * 119.28116 * 179.73305 * 22 20 19 24 24 H 1.08998 * 109.47610 * 90.00108 * 1 2 3 25 25 H 1.09003 * 109.47254 * 210.00580 * 1 2 3 26 26 H 1.09002 * 109.47279 * 329.99875 * 1 2 3 27 27 H 1.08000 * 120.36656 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46961 * 180.02562 * 10 8 6 29 29 H 1.09001 * 109.47035 * 300.00638 * 10 8 6 30 30 H 1.08998 * 109.46831 * 59.99945 * 10 8 6 31 31 H 0.96998 * 120.00200 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.36628 * 179.70267 * 19 4 3 33 33 H 1.09001 * 109.47142 * 270.31023 * 21 20 19 34 34 H 1.08997 * 109.47209 * 30.30895 * 21 20 19 35 35 H 1.09000 * 109.47467 * 150.31217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1767 1.1761 0.0000 4 6 3.5886 1.1664 0.0006 5 7 4.2834 2.3200 0.0000 6 6 5.6019 2.2980 -0.1062 7 8 6.1273 1.7320 -1.0470 8 6 6.4535 2.9736 0.9376 9 1 6.2099 4.0354 0.9736 10 6 6.1822 2.3416 2.3043 11 6 7.9089 2.8043 0.5853 12 1 8.1892 2.2614 -0.3053 13 6 8.8825 3.3425 1.3997 14 7 8.5410 4.0041 2.4839 15 14 10.6866 3.1321 0.9633 16 1 11.1248 4.2654 0.1096 17 1 11.4972 3.1072 2.2074 18 1 10.8720 1.8564 0.2261 19 6 4.2573 -0.0771 -0.0049 20 6 3.5308 -1.2191 0.0011 21 6 4.2354 -2.5511 0.0012 22 7 2.1772 -1.1769 0.0006 23 1 1.6766 -2.0078 0.0010 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6371 2.1117 -0.0004 28 1 6.7978 2.8306 3.0594 29 1 5.1295 2.4644 2.5589 30 1 6.4257 1.2798 2.2683 31 1 9.2260 4.3830 3.0567 32 1 5.3365 -0.1166 -0.0094 33 1 4.4056 -2.8722 -1.0265 34 1 5.1917 -2.4563 0.5153 35 1 3.6184 -3.2885 0.5146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118841503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = 11.159584 kcal Electronic energy + Delta-G solvation = -17776.092343 eV Core-core repulsion = 14967.751817 eV Total energy + Delta-G solvation = -2808.340526 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84973 -38.42178 -34.51177 -34.18239 -33.45072 -30.81396 -29.96148 -29.15226 -26.84618 -24.92882 -23.65738 -22.16849 -21.21627 -18.57757 -17.98797 -16.57623 -16.06806 -15.44609 -15.23965 -14.77744 -14.67687 -13.74874 -13.67674 -13.50550 -13.24694 -12.78092 -12.59306 -12.54816 -12.42336 -12.06627 -11.68983 -11.50763 -10.92724 -10.74956 -10.55931 -10.46788 -10.01124 -9.81103 -9.19664 -9.17615 -8.72591 -8.27215 -7.95840 -6.99504 -5.84401 -3.87546 1.17423 1.44069 2.80487 3.35827 3.43145 3.47868 3.54900 4.12464 4.28334 4.45088 4.59287 4.78929 4.93976 5.10995 5.25884 5.27943 5.38342 5.45980 5.47425 5.51363 5.69892 5.87204 6.15139 6.31374 6.67531 6.92108 6.93987 6.95531 7.12068 7.24468 7.42694 7.79897 8.00371 8.23258 8.51980 8.56564 9.19640 9.52077 9.76285 11.23023 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.035373 B = 0.005456 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.374216 B = 5130.938207 C = 5478.139794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.142 3.858 3 C -0.192 4.192 4 C 0.289 3.711 5 N -0.617 5.617 6 C 0.494 3.506 7 O -0.538 6.538 8 C 0.027 3.973 9 H 0.053 0.947 10 C -0.122 4.122 11 C -0.499 4.499 12 H 0.071 0.929 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.231 4.231 20 C 0.145 3.855 21 C -0.119 4.119 22 N -0.591 5.591 23 H 0.411 0.589 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.090 0.910 29 H 0.014 0.986 30 H 0.021 0.979 31 H 0.258 0.742 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 -14.676 -1.873 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.032 3.968 3 C -0.219 4.219 4 C 0.128 3.872 5 N -0.351 5.351 6 C 0.285 3.715 7 O -0.416 6.416 8 C 0.006 3.994 9 H 0.071 0.929 10 C -0.180 4.180 11 C -0.538 4.538 12 H 0.089 0.911 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.258 4.258 20 C 0.035 3.965 21 C -0.176 4.176 22 N -0.199 5.199 23 H 0.246 0.754 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.165 0.835 28 H 0.109 0.891 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.713 -13.860 -2.179 22.597 hybrid contribution 1.230 -0.762 -0.145 1.454 sum -16.483 -14.622 -2.324 22.157 Atomic orbital electron populations 1.20950 0.88018 1.04493 1.03894 1.20197 0.94328 0.85502 0.96817 1.20438 0.92808 0.96911 1.11708 1.18784 0.92569 0.88704 0.87162 1.68678 1.10576 1.25811 1.29989 1.22375 0.85523 0.77167 0.86452 1.90581 1.76692 1.41059 1.33255 1.18820 0.93830 0.96666 0.90039 0.92943 1.21600 0.97723 0.98623 1.00084 1.21230 0.89522 1.33995 1.09036 0.91123 1.24960 0.99054 0.95275 0.95052 1.69904 1.32912 1.36842 1.14067 0.86504 0.84820 0.78605 0.77551 1.20727 1.21382 1.19899 1.21711 1.01946 0.91371 1.10733 1.20183 0.82320 0.97448 0.96586 1.20979 1.01368 0.91280 1.03979 1.40789 1.05309 1.08310 1.65447 0.75378 0.89701 0.90888 0.88901 0.83473 0.89129 0.96678 0.95938 0.93186 0.83334 0.89647 0.88839 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.07 36.00 0.36 -0.19 16 2 C 0.14 1.35 6.80 -82.04 -0.56 0.79 16 3 C -0.19 -2.73 9.60 -39.49 -0.38 -3.11 16 4 C 0.29 5.65 6.55 -84.38 -0.55 5.09 16 5 N -0.62 -15.02 10.24 -10.39 -0.11 -15.13 16 6 C 0.49 13.72 5.62 -12.08 -0.07 13.65 16 7 O -0.54 -15.91 14.68 5.17 0.08 -15.84 16 8 C 0.03 0.80 2.71 -92.92 -0.25 0.55 16 9 H 0.05 1.64 8.14 -51.93 -0.42 1.22 16 10 C -0.12 -3.29 8.88 37.16 0.33 -2.96 16 11 C -0.50 -15.60 8.38 -34.44 -0.29 -15.89 16 12 H 0.07 2.29 6.75 -52.48 -0.35 1.94 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 14 N -0.90 -27.33 11.32 55.43 0.63 -26.70 16 15 Si 0.90 23.13 29.54 -169.99 -5.02 18.11 16 16 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 19 C -0.23 -4.08 8.52 -39.49 -0.34 -4.42 16 20 C 0.14 1.70 6.80 -82.04 -0.56 1.14 16 21 C -0.12 -0.95 10.07 36.00 0.36 -0.59 16 22 N -0.59 -4.97 5.23 -5.61 -0.03 -5.00 16 23 H 0.41 1.71 8.63 -40.82 -0.35 1.35 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.42 8.07 -51.93 -0.42 0.00 16 27 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.09 2.59 6.07 -51.93 -0.32 2.27 16 29 H 0.01 0.36 8.05 -51.93 -0.42 -0.06 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.15 3.11 6.40 -52.49 -0.34 2.78 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -39.43 298.91 -6.69 -46.12 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.71 Total: -1.74 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.03 Total: -4.33 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.49 Total: -46.83 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.84 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -39.43 -6.69 -46.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118841503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.280 kcal (2) G-P(sol) polarization free energy of solvation -39.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds