Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35344 * 119.66034 * 2 1 4 4 C 1.41193 * 119.26714 * 179.97438 * 3 2 1 5 5 N 1.34664 * 120.66884 * 179.97438 * 4 3 2 6 6 C 1.32296 * 120.00269 * 185.34641 * 5 4 3 7 7 O 1.21717 * 119.99987 * 55.45169 * 6 5 4 8 8 C 1.50700 * 120.00539 * 235.45637 * 6 5 4 9 9 H 1.09004 * 109.46787 * 299.99803 * 8 6 5 10 10 C 1.52999 * 109.47323 * 59.99547 * 8 6 5 11 11 C 1.50699 * 109.47565 * 180.02562 * 8 6 5 12 12 H 1.08005 * 119.99655 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00242 * 179.97438 * 11 8 6 14 14 N 1.31513 * 119.99877 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00106 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47056 * 90.00062 * 15 13 11 17 17 H 1.48502 * 109.47265 * 209.99879 * 15 13 11 18 18 H 1.48497 * 109.47171 * 330.00081 * 15 13 11 19 19 C 1.41191 * 118.66150 * 0.27483 * 4 3 2 20 20 C 1.35349 * 119.26487 * 359.44345 * 19 4 3 21 21 C 1.50694 * 119.65869 * 180.25311 * 20 19 4 22 22 N 1.35426 * 120.68067 * 0.56658 * 20 19 4 23 23 H 0.97004 * 119.28116 * 179.73305 * 22 20 19 24 24 H 1.08998 * 109.47610 * 90.00108 * 1 2 3 25 25 H 1.09003 * 109.47254 * 210.00580 * 1 2 3 26 26 H 1.09002 * 109.47279 * 329.99875 * 1 2 3 27 27 H 1.08000 * 120.36656 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46961 * 180.02562 * 10 8 6 29 29 H 1.09001 * 109.47035 * 300.00638 * 10 8 6 30 30 H 1.08998 * 109.46831 * 59.99945 * 10 8 6 31 31 H 0.96998 * 120.00200 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.36628 * 179.70267 * 19 4 3 33 33 H 1.09001 * 109.47142 * 270.31023 * 21 20 19 34 34 H 1.08997 * 109.47209 * 30.30895 * 21 20 19 35 35 H 1.09000 * 109.47467 * 150.31217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1767 1.1761 0.0000 4 6 3.5886 1.1664 0.0006 5 7 4.2834 2.3200 0.0000 6 6 5.6019 2.2980 -0.1062 7 8 6.1273 1.7320 -1.0470 8 6 6.4535 2.9736 0.9376 9 1 6.2099 4.0354 0.9736 10 6 6.1822 2.3416 2.3043 11 6 7.9089 2.8043 0.5853 12 1 8.1892 2.2614 -0.3053 13 6 8.8825 3.3425 1.3997 14 7 8.5410 4.0041 2.4839 15 14 10.6866 3.1321 0.9633 16 1 11.1248 4.2654 0.1096 17 1 11.4972 3.1072 2.2074 18 1 10.8720 1.8564 0.2261 19 6 4.2573 -0.0771 -0.0049 20 6 3.5308 -1.2191 0.0011 21 6 4.2354 -2.5511 0.0012 22 7 2.1772 -1.1769 0.0006 23 1 1.6766 -2.0078 0.0010 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6371 2.1117 -0.0004 28 1 6.7978 2.8306 3.0594 29 1 5.1295 2.4644 2.5589 30 1 6.4257 1.2798 2.2683 31 1 9.2260 4.3830 3.0567 32 1 5.3365 -0.1166 -0.0094 33 1 4.4056 -2.8722 -1.0265 34 1 5.1917 -2.4563 0.5153 35 1 3.6184 -3.2885 0.5146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118841503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = -20.658200 kcal Electronic energy + Delta-G solvation = -17777.472065 eV Core-core repulsion = 14967.751817 eV Total energy + Delta-G solvation = -2809.720248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03113 -40.22031 -36.09518 -35.65072 -35.09863 -32.76238 -31.48157 -30.08038 -27.79129 -27.25261 -25.33948 -23.23789 -22.92302 -20.03922 -19.30393 -18.38516 -17.79891 -17.20128 -16.93767 -16.18102 -15.86829 -15.67323 -14.99912 -14.66083 -14.24291 -14.16918 -13.93175 -13.66948 -13.25758 -13.09353 -13.07831 -13.00363 -12.84688 -12.68111 -12.64785 -12.33674 -12.16624 -11.91078 -11.10607 -10.93226 -10.55571 -10.18355 -9.85441 -8.49208 -8.14402 -6.29017 -0.05504 0.27144 1.35312 1.38698 1.50813 1.69155 1.83654 2.40668 2.67727 3.10986 3.44801 3.48762 3.83428 4.07608 4.13096 4.31204 4.45086 4.62876 4.66779 4.72129 4.76657 4.80491 4.96588 5.00746 5.04238 5.17234 5.24247 5.30780 5.47161 5.60940 5.74132 5.82283 5.97978 6.23561 6.31816 6.77167 6.83574 7.38141 7.72234 8.91626 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.035373 B = 0.005456 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.374216 B = 5130.938207 C = 5478.139794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.194 3.806 3 C -0.236 4.236 4 C 0.289 3.711 5 N -0.695 5.695 6 C 0.504 3.496 7 O -0.590 6.590 8 C 0.020 3.980 9 H 0.015 0.985 10 C -0.097 4.097 11 C -0.532 4.532 12 H 0.046 0.954 13 C 0.013 3.987 14 N -0.917 5.917 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.267 1.267 18 H -0.275 1.275 19 C -0.297 4.297 20 C 0.201 3.799 21 C -0.122 4.122 22 N -0.553 5.553 23 H 0.444 0.556 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.420 -18.627 -1.573 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 C -0.262 4.262 4 C 0.138 3.862 5 N -0.436 5.436 6 C 0.295 3.705 7 O -0.472 6.472 8 C -0.002 4.002 9 H 0.033 0.967 10 C -0.155 4.155 11 C -0.570 4.570 12 H 0.064 0.936 13 C -0.186 4.186 14 N -0.556 5.556 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.191 1.191 18 H -0.200 1.200 19 C -0.324 4.324 20 C 0.087 3.913 21 C -0.179 4.179 22 N -0.160 5.160 23 H 0.287 0.713 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.171 0.829 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.083 -17.907 -1.852 27.723 hybrid contribution 1.804 0.092 -0.256 1.825 sum -19.278 -17.816 -2.107 26.334 Atomic orbital electron populations 1.21233 0.82961 1.06951 1.06098 1.20954 0.96875 0.83905 0.90198 1.20571 0.90455 0.99583 1.15595 1.19485 0.94728 0.88122 0.83825 1.68431 1.07967 1.27151 1.40079 1.21990 0.87058 0.76396 0.85059 1.90486 1.77823 1.44289 1.34612 1.18788 0.94007 0.94997 0.92362 0.96705 1.21291 0.98058 0.97848 0.98275 1.21312 0.91284 1.35375 1.09059 0.93552 1.25809 1.03759 0.94327 0.94659 1.70010 1.34666 1.36496 1.14438 0.85424 0.78794 0.78527 0.78062 1.19887 1.19134 1.19963 1.21428 1.00639 0.93137 1.17226 1.20566 0.83403 0.97377 0.89999 1.21213 1.01324 0.89583 1.05772 1.41144 1.04457 1.10024 1.60364 0.71328 0.87223 0.86956 0.88030 0.82912 0.90925 0.95245 0.96062 0.92495 0.87755 0.87615 0.90194 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.29 10.07 71.23 0.72 0.43 16 2 C 0.19 2.74 6.80 41.33 0.28 3.02 16 3 C -0.24 -6.47 9.60 22.33 0.21 -6.26 16 4 C 0.29 11.92 6.55 40.16 0.26 12.18 16 5 N -0.69 -37.17 10.24 -306.35 -3.14 -40.31 16 6 C 0.50 30.99 5.62 88.04 0.50 31.49 16 7 O -0.59 -38.74 14.68 -4.40 -0.06 -38.81 16 8 C 0.02 1.26 2.71 -12.29 -0.03 1.23 16 9 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 10 C -0.10 -5.61 8.88 71.98 0.64 -4.97 16 11 C -0.53 -35.87 8.38 25.60 0.21 -35.66 16 12 H 0.05 3.28 6.75 -2.91 -0.02 3.26 16 13 C 0.01 0.80 5.30 84.65 0.45 1.25 16 14 N -0.92 -58.03 11.32 21.45 0.24 -57.78 16 15 Si 0.97 49.16 29.54 68.60 2.03 51.19 16 16 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -13.89 7.11 99.48 0.71 -13.18 16 19 C -0.30 -10.95 8.52 22.33 0.19 -10.76 16 20 C 0.20 4.09 6.80 41.33 0.28 4.37 16 21 C -0.12 -1.43 10.07 71.23 0.72 -0.72 16 22 N -0.55 -6.01 5.23 -171.66 -0.90 -6.90 16 23 H 0.44 -0.16 8.63 -92.71 -0.80 -0.96 16 24 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.10 0.30 8.07 -2.39 -0.02 0.28 16 27 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.07 4.40 6.07 -2.39 -0.01 4.39 16 29 H 0.03 1.55 8.05 -2.39 -0.02 1.53 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.10 4.86 6.40 -2.91 -0.02 4.84 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 35 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -101.33 298.91 2.90 -98.43 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: 0.30 Total: -1.41 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.43 Total: -4.40 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -3.79 Total: -104.99 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.06 Total: -38.81 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -101.33 2.90 -98.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118841503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.769 kcal (2) G-P(sol) polarization free energy of solvation -101.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds