Wall clock time and date at job start Mon Mar 30 2020 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00303 * 2 1 4 4 H 1.09006 * 109.18624 * 325.79663 * 3 2 1 5 5 C 1.52710 * 109.22540 * 85.17866 * 3 2 1 6 6 C 1.53373 * 108.22327 * 171.09690 * 5 3 2 7 7 C 1.52680 * 108.26838 * 291.05506 * 6 5 3 8 8 C 1.50729 * 110.73474 * 50.92039 * 7 6 5 9 9 C 1.34766 * 122.74050 * 341.64047 * 8 7 6 10 10 C 1.41036 * 119.65401 * 181.18388 * 9 8 7 11 11 C 1.36131 * 119.96475 * 359.67263 * 10 9 8 12 12 C 1.40489 * 119.01097 * 359.86844 * 11 10 9 13 13 O 1.22036 * 120.10390 * 180.21143 * 12 11 10 14 14 N 1.34271 * 119.78734 * 0.19285 * 12 11 10 15 15 C 1.36994 * 119.24522 * 180.23754 * 14 12 11 16 16 H 1.08003 * 119.99588 * 223.72498 * 15 14 12 17 17 C 1.39164 * 120.00474 * 43.72885 * 15 14 12 18 18 N 1.31189 * 119.99846 * 18.98609 * 17 15 14 19 19 Si 1.86802 * 120.00147 * 198.99154 * 17 15 14 20 20 H 1.48500 * 109.46931 * 60.00015 * 19 17 15 21 21 H 1.48499 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47190 * 299.99619 * 19 17 15 23 23 H 1.09006 * 109.47035 * 55.22543 * 1 2 3 24 24 H 1.08993 * 109.47689 * 175.22905 * 1 2 3 25 25 H 1.09006 * 109.47472 * 295.23396 * 1 2 3 26 26 H 1.00899 * 111.00172 * 123.94986 * 2 1 3 27 27 H 1.08991 * 109.71550 * 290.78071 * 5 3 2 28 28 H 1.08994 * 109.71010 * 51.37770 * 5 3 2 29 29 H 1.09009 * 109.70172 * 50.74596 * 6 5 3 30 30 H 1.08993 * 109.70222 * 171.31500 * 6 5 3 31 31 H 1.09000 * 109.22576 * 290.59603 * 7 6 5 32 32 H 1.09000 * 109.22992 * 171.24425 * 7 6 5 33 33 H 1.08001 * 120.01607 * 179.70010 * 10 9 8 34 34 H 1.07992 * 120.49451 * 179.88402 * 11 10 9 35 35 H 0.96997 * 119.99915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3290 2.0110 -0.5787 5 6 2.0625 1.8843 1.4368 6 6 2.8176 3.2193 1.4348 7 6 4.2808 2.9410 1.0991 8 6 4.3918 2.0991 -0.1462 9 6 3.3624 1.3780 -0.6326 10 6 3.5457 0.5927 -1.7897 11 6 4.7561 0.5715 -2.4123 12 6 5.8066 1.3418 -1.8861 13 8 6.8988 1.3406 -2.4305 14 7 5.6049 2.0795 -0.7825 15 6 6.6356 2.8303 -0.2817 16 1 6.8256 2.8455 0.7813 17 6 7.4376 3.5733 -1.1427 18 7 7.0118 3.8635 -2.3491 19 14 9.1206 4.1574 -0.5805 20 1 9.9606 2.9838 -0.2311 21 1 9.7702 4.9221 -1.6753 22 1 8.9690 5.0302 0.6112 23 1 -0.3633 0.5862 -0.8442 24 1 -0.3634 -1.0240 -0.0855 25 1 -0.3634 0.4381 0.9296 26 1 1.8305 -0.5261 0.7814 27 1 1.0537 2.0331 1.8216 28 1 2.5911 1.1633 2.0602 29 1 2.3882 3.8832 0.6844 30 1 2.7474 3.6827 2.4188 31 1 4.7461 2.4134 1.9317 32 1 4.7988 3.8868 0.9401 33 1 2.7262 0.0087 -2.1817 34 1 4.9065 -0.0283 -3.2977 35 1 7.5710 4.3811 -2.9494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088023811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:12 Heat of formation + Delta-G solvation = -3.569273 kcal Electronic energy + Delta-G solvation = -18703.209391 eV Core-core repulsion = 15894.230174 eV Total energy + Delta-G solvation = -2808.979217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21745 -37.74946 -35.12291 -33.82892 -33.52746 -31.57458 -28.51298 -28.27187 -25.62593 -24.51737 -22.62630 -21.93567 -21.32996 -19.29252 -17.77995 -16.40960 -15.44829 -15.18111 -14.98114 -14.83318 -14.22363 -13.84178 -13.66869 -13.24445 -13.07656 -12.68527 -12.47002 -11.88740 -11.79376 -11.68267 -11.45869 -11.30635 -11.08527 -10.99700 -10.71200 -10.49783 -10.20042 -10.05969 -9.69593 -9.12386 -8.55701 -8.12935 -7.90925 -6.67408 -6.34708 -4.34343 2.30821 3.14588 3.21515 3.21935 3.25568 4.02841 4.51175 4.71870 4.86390 5.13225 5.18231 5.38367 5.40718 5.49159 5.53004 5.68176 5.80674 5.90803 5.95445 6.01938 6.11519 6.20131 6.23793 6.40379 6.56620 6.61134 6.61263 6.96704 7.21325 7.26167 7.39186 7.57935 7.69799 7.74945 7.96709 8.60256 8.89526 9.20697 10.08467 10.50769 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032482 B = 0.007862 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.813078 B = 3560.478490 C = 4217.789905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.687 5.687 3 C 0.163 3.837 4 H 0.072 0.928 5 C -0.147 4.147 6 C -0.109 4.109 7 C -0.074 4.074 8 C 0.153 3.847 9 C -0.241 4.241 10 C -0.016 4.016 11 C -0.287 4.287 12 C 0.493 3.507 13 O -0.556 6.556 14 N -0.306 5.306 15 C -0.383 4.383 16 H 0.101 0.899 17 C 0.084 3.916 18 N -0.794 5.794 19 Si 0.926 3.074 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.271 1.271 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.340 0.660 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -1.529 7.799 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.316 5.316 3 C 0.053 3.947 4 H 0.090 0.910 5 C -0.186 4.186 6 C -0.147 4.147 7 C -0.111 4.111 8 C 0.035 3.965 9 C -0.247 4.247 10 C -0.039 4.039 11 C -0.311 4.311 12 C 0.297 3.703 13 O -0.440 6.440 14 N 0.002 4.998 15 C -0.510 4.510 16 H 0.118 0.882 17 C -0.133 4.133 18 N -0.421 5.421 19 Si 0.751 3.249 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.196 1.196 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.157 0.843 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.803 -1.494 6.497 11.855 hybrid contribution 0.503 0.443 0.970 1.179 sum -9.300 -1.051 7.468 11.973 Atomic orbital electron populations 1.22197 0.88761 1.01426 0.99749 1.60508 1.06525 1.14600 1.49979 1.19892 0.93456 0.87989 0.93368 0.91047 1.22274 0.99683 0.98392 0.98230 1.21447 0.95336 0.96771 1.01169 1.20439 0.96305 1.00382 0.94011 1.20223 0.84781 0.96226 0.95306 1.18091 0.94397 1.10023 1.02172 1.20868 0.96034 0.94404 0.92607 1.21729 0.94827 1.09467 1.05046 1.16800 0.89596 0.81471 0.82448 1.90725 1.27150 1.66971 1.59149 1.41547 1.07403 1.30238 1.20604 1.19485 1.09586 1.27437 0.94469 0.88167 1.25379 0.99392 0.93908 0.94656 1.69768 1.36621 1.28984 1.06774 0.86049 0.81825 0.78726 0.78317 1.19179 1.20528 1.19595 0.91947 0.91987 0.96538 0.84252 0.92550 0.91744 0.91548 0.91845 0.91098 0.89044 0.86819 0.86386 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.53 60.06 0.63 0.94 16 2 N -0.69 -9.29 5.68 -115.44 -0.66 -9.94 16 3 C 0.16 2.48 2.47 -69.05 -0.17 2.31 16 4 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 5 C -0.15 -1.92 5.26 -26.69 -0.14 -2.06 16 6 C -0.11 -1.52 5.99 -26.70 -0.16 -1.68 16 7 C -0.07 -1.31 4.66 -28.03 -0.13 -1.45 16 8 C 0.15 3.34 6.51 -81.50 -0.53 2.81 16 9 C -0.24 -4.79 5.53 -104.83 -0.58 -5.37 16 10 C -0.02 -0.34 9.24 -39.28 -0.36 -0.70 16 11 C -0.29 -7.08 10.00 -39.49 -0.39 -7.47 16 12 C 0.49 14.12 6.68 -15.64 -0.10 14.02 16 13 O -0.56 -17.93 14.74 4.89 0.07 -17.86 16 14 N -0.31 -8.12 2.66 -60.47 -0.16 -8.28 16 15 C -0.38 -10.30 7.59 -14.90 -0.11 -10.41 16 16 H 0.10 2.47 7.40 -52.48 -0.39 2.08 16 17 C 0.08 2.30 4.31 -17.48 -0.08 2.22 16 18 N -0.79 -23.28 11.71 55.50 0.65 -22.63 16 19 Si 0.93 20.85 29.59 -169.99 -5.03 15.82 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.16 7.78 -51.93 -0.40 -0.25 16 26 H 0.34 4.31 8.42 -39.29 -0.33 3.98 16 27 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 28 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 29 H 0.07 0.95 8.11 -51.92 -0.42 0.53 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.75 7.20 -51.93 -0.37 1.38 16 33 H 0.11 2.14 7.62 -52.49 -0.40 1.74 16 34 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 35 H 0.28 7.65 8.30 -40.82 -0.34 7.31 16 LS Contribution 283.13 15.07 4.27 4.27 Total: -1.00 -32.55 283.13 -7.76 -40.31 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.77 Total: 5.14 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.13 Total: -6.84 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.17 Total: -40.85 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.07 Total: -17.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.55 -7.76 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088023811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.745 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds