Wall clock time and date at job start Mon Mar 30 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00303 * 2 1 4 4 H 1.09006 * 109.18624 * 325.79663 * 3 2 1 5 5 C 1.52710 * 109.22540 * 85.17866 * 3 2 1 6 6 C 1.53373 * 108.22327 * 171.09690 * 5 3 2 7 7 C 1.52680 * 108.26838 * 291.05506 * 6 5 3 8 8 C 1.50729 * 110.73474 * 50.92039 * 7 6 5 9 9 C 1.34766 * 122.74050 * 341.64047 * 8 7 6 10 10 C 1.41036 * 119.65401 * 181.18388 * 9 8 7 11 11 C 1.36131 * 119.96475 * 359.67263 * 10 9 8 12 12 C 1.40489 * 119.01097 * 359.86844 * 11 10 9 13 13 O 1.22036 * 120.10390 * 180.21143 * 12 11 10 14 14 N 1.34271 * 119.78734 * 0.19285 * 12 11 10 15 15 C 1.36994 * 119.24522 * 180.23754 * 14 12 11 16 16 H 1.08003 * 119.99588 * 223.72498 * 15 14 12 17 17 C 1.39164 * 120.00474 * 43.72885 * 15 14 12 18 18 N 1.31189 * 119.99846 * 18.98609 * 17 15 14 19 19 Si 1.86802 * 120.00147 * 198.99154 * 17 15 14 20 20 H 1.48500 * 109.46931 * 60.00015 * 19 17 15 21 21 H 1.48499 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47190 * 299.99619 * 19 17 15 23 23 H 1.09006 * 109.47035 * 55.22543 * 1 2 3 24 24 H 1.08993 * 109.47689 * 175.22905 * 1 2 3 25 25 H 1.09006 * 109.47472 * 295.23396 * 1 2 3 26 26 H 1.00899 * 111.00172 * 123.94986 * 2 1 3 27 27 H 1.08991 * 109.71550 * 290.78071 * 5 3 2 28 28 H 1.08994 * 109.71010 * 51.37770 * 5 3 2 29 29 H 1.09009 * 109.70172 * 50.74596 * 6 5 3 30 30 H 1.08993 * 109.70222 * 171.31500 * 6 5 3 31 31 H 1.09000 * 109.22576 * 290.59603 * 7 6 5 32 32 H 1.09000 * 109.22992 * 171.24425 * 7 6 5 33 33 H 1.08001 * 120.01607 * 179.70010 * 10 9 8 34 34 H 1.07992 * 120.49451 * 179.88402 * 11 10 9 35 35 H 0.96997 * 119.99915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3290 2.0110 -0.5787 5 6 2.0625 1.8843 1.4368 6 6 2.8176 3.2193 1.4348 7 6 4.2808 2.9410 1.0991 8 6 4.3918 2.0991 -0.1462 9 6 3.3624 1.3780 -0.6326 10 6 3.5457 0.5927 -1.7897 11 6 4.7561 0.5715 -2.4123 12 6 5.8066 1.3418 -1.8861 13 8 6.8988 1.3406 -2.4305 14 7 5.6049 2.0795 -0.7825 15 6 6.6356 2.8303 -0.2817 16 1 6.8256 2.8455 0.7813 17 6 7.4376 3.5733 -1.1427 18 7 7.0118 3.8635 -2.3491 19 14 9.1206 4.1574 -0.5805 20 1 9.9606 2.9838 -0.2311 21 1 9.7702 4.9221 -1.6753 22 1 8.9690 5.0302 0.6112 23 1 -0.3633 0.5862 -0.8442 24 1 -0.3634 -1.0240 -0.0855 25 1 -0.3634 0.4381 0.9296 26 1 1.8305 -0.5261 0.7814 27 1 1.0537 2.0331 1.8216 28 1 2.5911 1.1633 2.0602 29 1 2.3882 3.8832 0.6844 30 1 2.7474 3.6827 2.4188 31 1 4.7461 2.4134 1.9317 32 1 4.7988 3.8868 0.9401 33 1 2.7262 0.0087 -2.1817 34 1 4.9065 -0.0283 -3.2977 35 1 7.5710 4.3811 -2.9494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088023811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:11 Heat of formation + Delta-G solvation = -26.171882 kcal Electronic energy + Delta-G solvation = -18704.189514 eV Core-core repulsion = 15894.230174 eV Total energy + Delta-G solvation = -2809.959340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.03283 -39.24645 -36.85080 -35.62992 -35.00824 -33.44274 -30.03265 -29.70080 -27.56695 -25.62273 -24.15970 -23.65864 -22.83407 -20.74296 -19.62932 -18.20464 -17.16587 -16.84545 -16.63495 -16.25761 -15.69210 -15.40552 -15.33228 -14.76361 -14.40122 -14.04009 -13.83907 -13.64648 -13.28310 -13.13720 -12.93304 -12.89386 -12.80631 -12.42696 -12.26082 -11.97672 -11.60090 -11.54996 -11.28721 -10.99120 -10.52805 -10.01878 -9.13531 -8.66312 -8.28987 -6.42617 0.47360 1.32196 1.39718 1.43887 1.47250 2.17042 2.82400 2.92899 3.39790 3.52625 3.89541 3.99039 4.14736 4.30364 4.42698 4.49925 4.59165 4.66247 4.69666 4.77901 4.83128 4.97388 5.08448 5.14423 5.19271 5.19712 5.22942 5.34711 5.45663 5.64337 5.74692 5.89163 6.02876 6.29503 6.61124 6.66285 6.91115 7.22677 8.03968 8.52026 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032482 B = 0.007862 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.813078 B = 3560.478490 C = 4217.789905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.699 5.699 3 C 0.165 3.835 4 H 0.079 0.921 5 C -0.138 4.138 6 C -0.102 4.102 7 C -0.072 4.072 8 C 0.138 3.862 9 C -0.225 4.225 10 C 0.005 3.995 11 C -0.316 4.316 12 C 0.463 3.537 13 O -0.618 6.618 14 N -0.325 5.325 15 C -0.405 4.405 16 H 0.115 0.885 17 C 0.032 3.968 18 N -0.847 5.847 19 Si 0.991 3.009 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.237 1.237 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.346 0.654 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.476 -1.541 10.537 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.329 5.329 3 C 0.055 3.945 4 H 0.097 0.903 5 C -0.177 4.177 6 C -0.140 4.140 7 C -0.109 4.109 8 C 0.022 3.978 9 C -0.231 4.231 10 C -0.018 4.018 11 C -0.339 4.339 12 C 0.269 3.731 13 O -0.507 6.507 14 N -0.018 5.018 15 C -0.531 4.531 16 H 0.133 0.867 17 C -0.180 4.180 18 N -0.476 5.476 19 Si 0.812 3.188 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.160 1.160 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.164 0.836 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.688 -1.502 9.300 15.803 hybrid contribution 1.118 0.320 0.158 1.174 sum -11.570 -1.182 9.458 14.990 Atomic orbital electron populations 1.22242 0.86552 1.02520 1.00586 1.60363 1.08561 1.13303 1.50722 1.19871 0.90201 0.89601 0.94807 0.90338 1.22226 1.01484 0.97510 0.96469 1.21459 0.92133 0.97650 1.02804 1.20549 0.99470 0.98668 0.92254 1.21128 0.83862 0.96638 0.96134 1.18854 0.96315 1.06900 1.01019 1.21244 0.95176 0.93382 0.92038 1.21792 0.95608 1.10338 1.06204 1.17434 0.89895 0.82310 0.83422 1.90650 1.29265 1.69473 1.61327 1.41642 1.09109 1.30332 1.20705 1.19883 1.10701 1.27314 0.95188 0.86720 1.26431 1.03050 0.93903 0.94580 1.69886 1.38047 1.31193 1.08478 0.85080 0.76591 0.78195 0.78902 1.20200 1.20635 1.16036 0.92088 0.90706 0.94787 0.83561 0.89235 0.91278 0.91895 0.88582 0.89806 0.90847 0.83764 0.86237 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.53 127.69 1.34 1.84 16 2 N -0.70 -15.86 5.68 -519.16 -2.95 -18.81 16 3 C 0.17 4.36 2.47 44.05 0.11 4.47 16 4 H 0.08 2.05 7.69 -2.38 -0.02 2.03 16 5 C -0.14 -2.89 5.26 30.62 0.16 -2.73 16 6 C -0.10 -2.42 5.99 30.61 0.18 -2.24 16 7 C -0.07 -2.42 4.66 29.75 0.14 -2.28 16 8 C 0.14 5.95 6.51 40.96 0.27 6.22 16 9 C -0.23 -8.53 5.53 -20.00 -0.11 -8.64 16 10 C 0.00 0.20 9.24 22.47 0.21 0.41 16 11 C -0.32 -16.07 10.00 22.33 0.22 -15.85 16 12 C 0.46 27.83 6.68 84.87 0.57 28.40 16 13 O -0.62 -42.49 14.74 -5.43 -0.08 -42.57 16 14 N -0.32 -17.76 2.66 -463.58 -1.23 -18.99 16 15 C -0.40 -22.40 7.59 84.11 0.64 -21.76 16 16 H 0.12 5.73 7.40 -2.91 -0.02 5.71 16 17 C 0.03 1.80 4.31 85.01 0.37 2.17 16 18 N -0.85 -52.37 11.71 21.69 0.25 -52.12 16 19 Si 0.99 44.03 29.59 68.60 2.03 46.06 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 23 H 0.06 1.05 7.93 -2.38 -0.02 1.03 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.03 0.47 7.78 -2.38 -0.02 0.45 16 26 H 0.35 7.26 8.42 -89.69 -0.76 6.51 16 27 H 0.09 1.40 7.82 -2.39 -0.02 1.38 16 28 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 29 H 0.06 1.56 8.11 -2.38 -0.02 1.54 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.07 2.76 7.20 -2.39 -0.02 2.75 16 33 H 0.14 5.04 7.62 -2.91 -0.02 5.01 16 34 H 0.12 5.83 8.06 -2.91 -0.02 5.80 16 35 H 0.27 16.04 8.30 -92.71 -0.77 15.27 16 Total: -1.00 -76.54 283.13 2.46 -74.09 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.34 Total: 22.33 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 4.09 Total: -9.99 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.93 Total: -89.92 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.08 Total: -42.57 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -76.54 2.46 -74.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088023811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.915 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds