Wall clock time and date at job start Mon Mar 30 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36018 * 117.00142 * 2 1 4 4 C 1.39260 * 120.39148 * 180.02562 * 3 2 1 5 5 C 1.38293 * 118.46289 * 180.02562 * 4 3 2 6 6 C 1.39089 * 119.15386 * 0.27553 * 5 4 3 7 7 N 1.39249 * 119.64998 * 179.72324 * 6 5 4 8 8 C 1.46504 * 119.99685 * 88.49589 * 7 6 5 9 9 C 1.50702 * 109.47257 * 90.00504 * 8 7 6 10 10 H 1.07997 * 119.99893 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00014 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99793 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00232 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46951 * 89.99872 * 13 11 9 15 15 H 1.48498 * 109.47174 * 210.00263 * 13 11 9 16 16 H 1.48504 * 109.46771 * 330.00164 * 13 11 9 17 17 C 1.46493 * 120.00412 * 268.49726 * 7 6 5 18 18 C 1.53001 * 117.49468 * 3.34833 * 17 7 6 19 19 C 1.53000 * 60.00170 * 252.51080 * 18 17 7 20 20 N 1.32332 * 120.70164 * 359.42426 * 6 5 4 21 21 C 1.31999 * 121.68157 * 0.59105 * 20 6 5 22 22 H 1.09004 * 109.46847 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46919 * 299.99373 * 1 2 3 24 24 H 1.08996 * 109.47264 * 59.99906 * 1 2 3 25 25 H 1.08005 * 120.77137 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.42391 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46562 * 210.00089 * 8 7 6 28 28 H 1.09000 * 109.47588 * 330.00056 * 8 7 6 29 29 H 0.97001 * 119.99789 * 179.97438 * 12 11 9 30 30 H 1.09004 * 115.55488 * 149.05579 * 17 7 6 31 31 H 1.08996 * 117.50211 * 0.02562 * 18 17 7 32 32 H 1.09004 * 117.49764 * 145.01887 * 18 17 7 33 33 H 1.08995 * 117.49864 * 252.51260 * 19 18 17 34 34 H 1.08993 * 117.49636 * 107.48833 * 19 18 17 35 35 H 1.07996 * 119.61725 * 179.67150 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2943 -0.0005 5 6 4.0227 2.5469 0.0000 6 6 3.2097 3.6754 0.0069 7 7 3.7888 4.9417 0.0134 8 6 4.1227 5.6009 -1.2516 9 6 2.9455 6.4180 -1.7183 10 1 2.0392 6.4433 -1.1315 11 6 3.0256 7.1331 -2.8943 12 7 1.9981 7.8458 -3.3018 13 14 4.5934 7.0899 -3.9090 14 1 4.5215 5.9720 -4.8838 15 1 4.7464 8.3741 -4.6388 16 1 5.7589 6.8891 -3.0107 17 6 4.0644 5.6147 1.2851 18 6 3.7657 4.8429 2.5720 19 6 2.8655 6.0064 2.1514 20 7 1.8915 3.5584 0.0015 21 6 1.3002 2.3783 0.0010 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 4.0432 0.4006 -0.0014 26 1 5.0980 2.6476 -0.0008 27 1 4.9830 6.2540 -1.1049 28 1 4.3623 4.8474 -2.0019 29 1 2.0546 8.3492 -4.1290 30 1 4.9260 6.2823 1.2867 31 1 3.3646 3.8343 2.4724 32 1 4.4310 5.0026 3.4205 33 1 2.9386 6.9314 2.7231 34 1 1.8719 5.7633 1.7750 35 1 0.2218 2.3217 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234984768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:40 Heat of formation + Delta-G solvation = 52.339280 kcal Electronic energy + Delta-G solvation = -17986.316873 eV Core-core repulsion = 15179.762033 eV Total energy + Delta-G solvation = -2806.554840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35089 -38.38269 -36.68982 -33.65123 -32.07862 -32.04654 -29.42471 -27.55367 -26.61322 -23.20160 -22.69298 -21.92931 -21.72495 -19.89557 -17.97439 -16.92953 -16.44915 -16.19143 -15.82234 -15.57501 -14.38072 -14.15393 -14.07925 -13.82196 -13.12295 -12.81230 -12.59065 -12.25015 -12.17309 -11.87957 -11.40300 -11.32448 -11.09542 -10.95292 -10.59587 -10.44055 -9.86045 -9.77444 -9.39909 -9.31096 -8.96763 -8.49638 -7.98213 -6.85935 -5.96814 -3.93080 1.45607 1.63796 3.27006 3.31182 3.38485 3.38955 3.94959 4.14909 4.46282 4.46665 4.85604 4.92073 5.11108 5.12971 5.27821 5.35534 5.39813 5.42031 5.45477 5.60282 5.70055 5.86225 6.01334 6.08181 6.29686 6.35455 6.50492 6.61101 6.79233 6.90285 6.92563 7.32535 7.73599 8.21105 8.36787 8.69087 8.75463 9.19713 9.65354 11.17103 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.007236 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.614981 B = 3868.777286 C = 4468.187274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.051 3.949 4 C -0.106 4.106 5 C -0.137 4.137 6 C 0.371 3.629 7 N -0.624 5.624 8 C 0.247 3.753 9 C -0.521 4.521 10 H 0.082 0.918 11 C 0.066 3.934 12 N -0.902 5.902 13 Si 0.870 3.130 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.137 3.863 18 C -0.204 4.204 19 C -0.202 4.202 20 N -0.444 5.444 21 C 0.031 3.969 22 H 0.098 0.902 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.027 0.973 28 H 0.013 0.987 29 H 0.261 0.739 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -13.163 8.912 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.005 3.995 4 C -0.133 4.133 5 C -0.160 4.160 6 C 0.143 3.857 7 N -0.349 5.349 8 C 0.126 3.874 9 C -0.560 4.560 10 H 0.100 0.900 11 C -0.135 4.135 12 N -0.541 5.541 13 Si 0.697 3.303 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.190 1.190 17 C 0.030 3.970 18 C -0.243 4.243 19 C -0.242 4.242 20 N -0.156 5.156 21 C -0.129 4.129 22 H 0.116 0.884 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.667 -12.456 8.704 15.287 hybrid contribution 0.697 -0.508 -0.752 1.144 sum 2.364 -12.964 7.951 15.391 Atomic orbital electron populations 1.23043 0.78527 1.03715 1.01644 1.86034 1.21238 1.26508 1.89321 1.20007 0.93201 0.85497 1.00837 1.20727 0.91441 0.98310 1.02829 1.22261 1.01586 0.91585 1.00566 1.18005 0.86305 0.86829 0.94537 1.45361 1.70563 1.14981 1.04017 1.19363 0.95960 0.91828 0.80215 1.21730 1.00877 1.26521 1.06892 0.90011 1.24934 0.95919 0.95336 0.97322 1.69920 1.30125 1.31232 1.22861 0.86957 0.84746 0.77593 0.80996 1.20404 1.21207 1.18999 1.21124 0.97378 0.97711 0.80759 1.23202 1.04904 0.97197 0.98954 1.23424 0.98253 0.97462 1.05053 1.67696 1.13547 1.25800 1.08583 1.22733 1.00117 0.86922 1.03127 0.88398 0.92634 0.92437 0.84583 0.84368 0.95528 0.96939 0.92910 0.86624 0.89921 0.89113 0.89511 0.88377 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.82 101.05 0.99 1.24 16 2 O -0.32 -4.24 10.51 -19.80 -0.21 -4.45 16 3 C 0.05 0.79 6.71 -39.12 -0.26 0.52 16 4 C -0.11 -1.57 10.12 -39.18 -0.40 -1.96 16 5 C -0.14 -2.26 10.01 -39.25 -0.39 -2.65 16 6 C 0.37 7.44 4.46 -154.85 -0.69 6.75 16 7 N -0.62 -13.31 2.80 -167.56 -0.47 -13.78 16 8 C 0.25 6.01 4.55 -5.19 -0.02 5.99 16 9 C -0.52 -15.12 9.94 -34.44 -0.34 -15.47 16 10 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 13 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 17 C 0.14 2.52 6.57 -67.93 -0.45 2.08 16 18 C -0.20 -3.21 9.83 -26.73 -0.26 -3.47 16 19 C -0.20 -3.61 10.36 -26.73 -0.28 -3.89 16 20 N -0.44 -9.24 10.39 -12.29 -0.13 -9.37 16 21 C 0.03 0.52 10.21 -17.39 -0.18 0.34 16 22 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 24 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 25 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 26 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 28 H 0.01 0.31 7.48 -51.93 -0.39 -0.08 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.12 1.95 8.14 -51.93 -0.42 1.52 16 31 H 0.08 1.38 7.06 -51.93 -0.37 1.01 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.10 2.03 8.14 -51.93 -0.42 1.60 16 35 H 0.15 2.15 6.30 -52.49 -0.33 1.82 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -33.25 300.44 -7.35 -40.60 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.80 Total: 1.83 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.38 Total: -8.68 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.18 Total: -50.65 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.21 Total: -4.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.25 -7.35 -40.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234984768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.938 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds