Wall clock time and date at job start Mon Mar 30 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36018 * 117.00142 * 2 1 4 4 C 1.39260 * 120.39148 * 180.02562 * 3 2 1 5 5 C 1.38293 * 118.46289 * 180.02562 * 4 3 2 6 6 C 1.39089 * 119.15386 * 0.27553 * 5 4 3 7 7 N 1.39249 * 119.64998 * 179.72324 * 6 5 4 8 8 C 1.46504 * 119.99685 * 88.49589 * 7 6 5 9 9 C 1.50702 * 109.47257 * 90.00504 * 8 7 6 10 10 H 1.07997 * 119.99893 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00014 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99793 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00232 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46951 * 89.99872 * 13 11 9 15 15 H 1.48498 * 109.47174 * 210.00263 * 13 11 9 16 16 H 1.48504 * 109.46771 * 330.00164 * 13 11 9 17 17 C 1.46493 * 120.00412 * 268.49726 * 7 6 5 18 18 C 1.53001 * 117.49468 * 3.34833 * 17 7 6 19 19 C 1.53000 * 60.00170 * 252.51080 * 18 17 7 20 20 N 1.32332 * 120.70164 * 359.42426 * 6 5 4 21 21 C 1.31999 * 121.68157 * 0.59105 * 20 6 5 22 22 H 1.09004 * 109.46847 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46919 * 299.99373 * 1 2 3 24 24 H 1.08996 * 109.47264 * 59.99906 * 1 2 3 25 25 H 1.08005 * 120.77137 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.42391 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46562 * 210.00089 * 8 7 6 28 28 H 1.09000 * 109.47588 * 330.00056 * 8 7 6 29 29 H 0.97001 * 119.99789 * 179.97438 * 12 11 9 30 30 H 1.09004 * 115.55488 * 149.05579 * 17 7 6 31 31 H 1.08996 * 117.50211 * 0.02562 * 18 17 7 32 32 H 1.09004 * 117.49764 * 145.01887 * 18 17 7 33 33 H 1.08995 * 117.49864 * 252.51260 * 19 18 17 34 34 H 1.08993 * 117.49636 * 107.48833 * 19 18 17 35 35 H 1.07996 * 119.61725 * 179.67150 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2943 -0.0005 5 6 4.0227 2.5469 0.0000 6 6 3.2097 3.6754 0.0069 7 7 3.7888 4.9417 0.0134 8 6 4.1227 5.6009 -1.2516 9 6 2.9455 6.4180 -1.7183 10 1 2.0392 6.4433 -1.1315 11 6 3.0256 7.1331 -2.8943 12 7 1.9981 7.8458 -3.3018 13 14 4.5934 7.0899 -3.9090 14 1 4.5215 5.9720 -4.8838 15 1 4.7464 8.3741 -4.6388 16 1 5.7589 6.8891 -3.0107 17 6 4.0644 5.6147 1.2851 18 6 3.7657 4.8429 2.5720 19 6 2.8655 6.0064 2.1514 20 7 1.8915 3.5584 0.0015 21 6 1.3002 2.3783 0.0010 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 4.0432 0.4006 -0.0014 26 1 5.0980 2.6476 -0.0008 27 1 4.9830 6.2540 -1.1049 28 1 4.3623 4.8474 -2.0019 29 1 2.0546 8.3492 -4.1290 30 1 4.9260 6.2823 1.2867 31 1 3.3646 3.8343 2.4724 32 1 4.4310 5.0026 3.4205 33 1 2.9386 6.9314 2.7231 34 1 1.8719 5.7633 1.7750 35 1 0.2218 2.3217 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234984768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:40 Heat of formation + Delta-G solvation = 29.991134 kcal Electronic energy + Delta-G solvation = -17987.285961 eV Core-core repulsion = 15179.762033 eV Total energy + Delta-G solvation = -2807.523928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59858 -39.61534 -38.01617 -35.46435 -33.99030 -33.34085 -30.96306 -28.79869 -28.08707 -24.57056 -24.08774 -23.68600 -23.08950 -21.32330 -19.07007 -18.92961 -17.90057 -17.60747 -17.32798 -16.69640 -16.03102 -15.67145 -15.37982 -15.02820 -14.62421 -14.29163 -14.02444 -13.85293 -13.74293 -13.07848 -13.02170 -12.73756 -12.39940 -12.39149 -12.27106 -12.16697 -11.69809 -11.37793 -11.15836 -10.74313 -10.64515 -10.34150 -9.24001 -8.46041 -8.22074 -6.25837 0.17398 0.38448 1.36950 1.39175 1.50065 2.24292 2.37788 2.50710 2.82687 3.07991 3.12142 3.64688 3.76342 4.01646 4.11046 4.13117 4.26920 4.34921 4.37662 4.44551 4.65394 4.72438 4.77155 4.85448 4.90391 4.96150 5.00863 5.12386 5.17440 5.34103 5.43692 5.59131 6.21557 6.26633 6.72983 6.85864 6.93133 7.31250 7.41115 8.95166 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.007236 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.614981 B = 3868.777286 C = 4468.187274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.063 3.937 4 C -0.100 4.100 5 C -0.129 4.129 6 C 0.335 3.665 7 N -0.632 5.632 8 C 0.256 3.744 9 C -0.524 4.524 10 H 0.022 0.978 11 C -0.001 4.001 12 N -0.957 5.957 13 Si 0.950 3.050 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.234 1.234 17 C 0.113 3.887 18 C -0.163 4.163 19 C -0.220 4.220 20 N -0.495 5.495 21 C 0.013 3.987 22 H 0.130 0.870 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.173 0.827 26 H 0.162 0.838 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.263 0.737 30 H 0.134 0.866 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -15.380 9.407 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C 0.016 3.984 4 C -0.126 4.126 5 C -0.152 4.152 6 C 0.108 3.892 7 N -0.356 5.356 8 C 0.134 3.866 9 C -0.564 4.564 10 H 0.040 0.960 11 C -0.197 4.197 12 N -0.598 5.598 13 Si 0.773 3.227 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.157 1.157 17 C 0.007 3.993 18 C -0.201 4.201 19 C -0.260 4.260 20 N -0.208 5.208 21 C -0.146 4.146 22 H 0.148 0.852 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.190 0.810 26 H 0.179 0.821 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.287 -14.710 9.244 17.894 hybrid contribution -0.353 0.085 -0.835 0.911 sum 3.934 -14.625 8.409 17.323 Atomic orbital electron populations 1.23371 0.76501 1.05958 1.02015 1.86047 1.23290 1.25150 1.88728 1.20067 0.93691 0.85606 0.99058 1.21113 0.91474 0.98901 1.01125 1.22369 1.02356 0.90929 0.99530 1.18312 0.86482 0.87232 0.97155 1.45322 1.70856 1.15714 1.03754 1.19082 0.94058 0.91460 0.82002 1.21948 1.00600 1.27356 1.06485 0.96009 1.25989 1.00245 0.94643 0.98787 1.70117 1.33201 1.32751 1.23747 0.85684 0.80257 0.77655 0.79134 1.19748 1.20947 1.15670 1.21488 0.97743 0.99196 0.80860 1.23165 1.03171 0.95517 0.98245 1.23339 0.96559 0.99705 1.06376 1.67560 1.14853 1.28069 1.10315 1.22958 1.00996 0.86830 1.03798 0.85237 0.91874 0.92517 0.80970 0.82079 0.94019 0.96655 0.92814 0.84897 0.90903 0.85316 0.87806 0.92399 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.82 113.37 1.11 1.38 16 2 O -0.32 -7.73 10.51 -93.76 -0.99 -8.71 16 3 C 0.06 1.84 6.71 22.57 0.15 1.99 16 4 C -0.10 -2.66 10.12 22.53 0.23 -2.43 16 5 C -0.13 -4.01 10.01 22.49 0.23 -3.79 16 6 C 0.34 13.47 4.46 132.99 0.59 14.06 16 7 N -0.63 -27.04 2.80 -684.05 -1.91 -28.95 16 8 C 0.26 12.44 4.55 85.63 0.39 12.83 16 9 C -0.52 -31.67 9.94 25.60 0.25 -31.41 16 10 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 11 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 12 N -0.96 -62.46 13.96 21.45 0.30 -62.16 16 13 Si 0.95 44.35 27.47 68.60 1.88 46.24 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.23 -9.67 6.54 99.48 0.65 -9.02 16 17 C 0.11 4.10 6.57 44.99 0.30 4.40 16 18 C -0.16 -4.86 9.83 30.59 0.30 -4.56 16 19 C -0.22 -8.05 10.36 30.60 0.32 -7.73 16 20 N -0.50 -21.37 10.39 -192.78 -2.00 -23.38 16 21 C 0.01 0.45 10.21 84.72 0.87 1.32 16 22 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.06 0.98 7.67 -2.39 -0.02 0.97 16 24 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 25 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 26 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 27 H 0.04 1.89 7.13 -2.38 -0.02 1.88 16 28 H 0.02 0.74 7.48 -2.39 -0.02 0.72 16 29 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 30 H 0.13 4.25 8.14 -2.39 -0.02 4.24 16 31 H 0.07 2.34 7.06 -2.39 -0.02 2.33 16 32 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.16 4.78 6.30 -2.91 -0.02 4.76 16 Total: -1.00 -76.95 300.44 3.50 -73.45 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.02 Total: 17.04 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.20 Total: -13.52 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.62 Total: -114.49 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.99 Total: -8.71 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Total: -76.95 3.50 -73.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234984768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.441 kcal (2) G-P(sol) polarization free energy of solvation -76.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds