Wall clock time and date at job start Mon Mar 30 2020 04:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00082 * 2 1 4 4 H 1.08003 * 119.99694 * 203.04248 * 3 2 1 5 5 C 1.38811 * 120.00041 * 23.03358 * 3 2 1 6 6 N 1.31616 * 120.00196 * 12.96041 * 5 3 2 7 7 Si 1.86802 * 119.99886 * 192.96337 * 5 3 2 8 8 H 1.48501 * 109.47104 * 90.00072 * 7 5 3 9 9 H 1.48501 * 109.46929 * 209.99731 * 7 5 3 10 10 H 1.48497 * 109.47138 * 330.00047 * 7 5 3 11 11 C 1.46502 * 120.00189 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.46419 * 90.00310 * 11 2 1 13 13 O 1.20759 * 120.00148 * 0.02562 * 12 11 2 14 14 C 1.50701 * 119.99668 * 180.02562 * 12 11 2 15 15 C 1.53003 * 109.47181 * 180.02562 * 14 12 11 16 16 C 1.50691 * 109.47295 * 180.02562 * 15 14 12 17 17 C 1.38223 * 119.62215 * 125.00084 * 16 15 14 18 18 C 1.38622 * 119.16680 * 179.97438 * 17 16 15 19 19 C 1.38676 * 118.42097 * 0.02562 * 18 17 16 20 20 C 1.38182 * 119.16166 * 359.97438 * 19 18 17 21 21 N 1.31859 * 119.61649 * 304.72382 * 16 15 14 22 22 H 1.08999 * 109.47278 * 275.12597 * 1 2 3 23 23 H 1.09004 * 109.46858 * 35.12952 * 1 2 3 24 24 H 1.08997 * 109.46843 * 155.12865 * 1 2 3 25 25 H 0.97001 * 120.00118 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47194 * 330.00780 * 11 2 1 27 27 H 1.08991 * 109.47586 * 210.00511 * 11 2 1 28 28 H 1.09003 * 109.47249 * 60.00125 * 14 12 11 29 29 H 1.09003 * 109.47143 * 300.00383 * 14 12 11 30 30 H 1.09008 * 109.46656 * 60.00069 * 15 14 12 31 31 H 1.08994 * 109.47169 * 300.00438 * 15 14 12 32 32 H 1.08007 * 120.41633 * 359.95638 * 17 16 15 33 33 H 1.08001 * 120.79094 * 180.02562 * 18 17 16 34 34 H 1.07998 * 120.41822 * 180.02562 * 19 18 17 35 35 H 1.07994 * 119.61867 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5387 2.3402 0.4704 6 7 0.4120 2.2599 1.1459 7 14 2.3155 4.0074 0.1444 8 1 1.7979 4.5529 -1.1361 9 1 1.9757 4.9368 1.2517 10 1 3.7905 3.8580 0.0586 11 6 2.1976 -1.2687 0.0006 12 6 2.4488 -1.7042 -1.4202 13 8 2.0568 -1.0247 -2.3383 14 6 3.1891 -2.9877 -1.6951 15 6 3.3087 -3.1939 -3.2064 16 6 4.0485 -4.4776 -3.4813 17 6 3.4686 -5.4418 -4.2841 18 6 4.1577 -6.6190 -4.5312 19 6 5.4099 -6.7834 -3.9586 20 6 5.9258 -5.7752 -3.1667 21 7 5.2439 -4.6657 -2.9577 22 1 -0.3634 0.0918 1.0235 23 1 -0.3633 0.8405 -0.5914 24 1 -0.3633 -0.9323 -0.4322 25 1 -0.0152 3.0665 1.4743 26 1 1.6085 -2.0282 0.5146 27 1 3.1499 -1.1382 0.5144 28 1 2.6435 -3.8231 -1.2561 29 1 4.1854 -2.9337 -1.2561 30 1 3.8546 -2.3584 -3.6449 31 1 2.3127 -3.2477 -3.6457 32 1 2.4906 -5.2803 -4.7132 33 1 3.7295 -7.3898 -5.1548 34 1 5.9752 -7.6875 -4.1300 35 1 6.9005 -5.8953 -2.7175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259895755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:59 Heat of formation + Delta-G solvation = -1.881829 kcal Electronic energy + Delta-G solvation = -17153.705875 eV Core-core repulsion = 14344.799831 eV Total energy + Delta-G solvation = -2808.906044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16109 -40.23295 -37.04821 -35.02279 -33.33016 -33.22962 -31.36320 -29.16276 -27.91076 -26.01090 -24.36970 -23.50469 -22.22148 -20.26346 -18.78371 -17.79607 -17.22656 -17.06354 -16.75447 -16.29557 -15.97870 -15.86715 -15.39199 -14.82284 -14.66127 -14.19224 -13.88711 -13.81034 -13.63836 -13.09664 -12.82104 -12.78672 -12.57031 -12.45417 -12.30435 -12.05803 -12.02516 -11.88916 -10.87475 -10.76757 -10.42858 -10.27670 -9.84146 -8.74754 -7.84525 -5.33725 0.21036 0.41520 1.31242 1.43077 1.46408 1.54308 2.48289 2.87151 3.13782 3.32444 3.49249 3.73964 3.92131 4.04743 4.14171 4.21668 4.29455 4.36999 4.57914 4.63612 4.72910 4.79150 4.84372 4.89536 4.96669 5.03038 5.14690 5.30317 5.31971 5.33454 5.58230 5.66113 5.85185 6.28566 6.90746 7.11579 7.12475 7.82532 8.25111 9.18251 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.045822 B = 0.003975 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.916180 B = 7041.963520 C = 7275.861896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.608 5.608 3 C -0.260 4.260 4 H 0.062 0.938 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.291 1.291 9 H -0.288 1.288 10 H -0.268 1.268 11 C 0.092 3.908 12 C 0.328 3.672 13 O -0.487 6.487 14 C -0.147 4.147 15 C -0.057 4.057 16 C 0.115 3.885 17 C -0.179 4.179 18 C -0.075 4.075 19 C -0.176 4.176 20 C 0.086 3.914 21 N -0.513 5.513 22 H 0.015 0.985 23 H 0.007 0.993 24 H 0.025 0.975 25 H 0.249 0.751 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -21.233 -8.950 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.330 5.330 3 C -0.390 4.390 4 H 0.079 0.921 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.219 1.219 9 H -0.214 1.214 10 H -0.193 1.193 11 C -0.035 4.035 12 C 0.202 3.798 13 O -0.362 6.362 14 C -0.185 4.185 15 C -0.095 4.095 16 C -0.022 4.022 17 C -0.199 4.199 18 C -0.101 4.101 19 C -0.196 4.196 20 C -0.071 4.071 21 N -0.223 5.223 22 H 0.033 0.967 23 H 0.026 0.974 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.490 -20.077 -8.824 23.517 hybrid contribution -0.226 0.621 -0.580 0.879 sum 8.264 -19.456 -9.404 23.136 Atomic orbital electron populations 1.20514 0.82688 0.95536 0.97675 1.43846 1.02146 1.01413 1.85612 1.19405 0.98217 0.87165 1.34249 0.92051 1.25748 0.98686 1.01776 0.98507 1.70208 1.20721 1.27654 1.39723 0.85259 0.78476 0.79876 0.76805 1.21858 1.21383 1.19257 1.21534 0.98921 0.88846 0.94170 1.26491 0.74631 0.85728 0.92904 1.90321 1.42939 1.54531 1.48442 1.21971 1.02892 0.96880 0.96772 1.20248 0.99598 0.93273 0.96380 1.21247 0.91163 0.95895 0.93882 1.22241 1.02477 0.94973 1.00171 1.21999 0.94245 0.96880 0.96943 1.22503 0.97050 1.01506 0.98523 1.23249 0.99987 0.88504 0.95362 1.67436 1.07745 1.24329 1.22823 0.96663 0.97402 0.95687 0.94149 0.88155 0.89023 0.86809 0.87403 0.91790 0.89869 0.83537 0.81909 0.81757 0.80788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.52 8.98 127.77 1.15 10.67 16 2 N -0.61 -32.19 2.41 -731.29 -1.76 -33.95 16 3 C -0.26 -15.18 9.65 84.03 0.81 -14.36 16 4 H 0.06 3.54 7.86 -2.91 -0.02 3.52 16 5 C -0.05 -3.07 5.10 84.86 0.43 -2.64 16 6 N -0.94 -57.35 10.71 21.65 0.23 -57.12 16 7 Si 0.97 47.46 29.57 68.60 2.03 49.49 16 8 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 C 0.09 3.68 6.06 85.63 0.52 4.20 16 12 C 0.33 12.18 7.23 29.10 0.21 12.39 16 13 O -0.49 -22.54 16.05 -1.45 -0.02 -22.57 16 14 C -0.15 -3.95 5.50 29.85 0.16 -3.79 16 15 C -0.06 -1.53 4.90 29.85 0.15 -1.38 16 16 C 0.11 2.73 6.17 42.55 0.26 2.99 16 17 C -0.18 -3.29 9.71 22.36 0.22 -3.07 16 18 C -0.07 -1.02 10.18 22.47 0.23 -0.79 16 19 C -0.18 -2.30 10.11 22.36 0.23 -2.07 16 20 C 0.09 1.52 11.18 84.67 0.95 2.46 16 21 N -0.51 -12.52 9.89 -183.89 -1.82 -14.34 16 22 H 0.02 0.84 7.34 -2.39 -0.02 0.82 16 23 H 0.01 0.42 7.34 -2.38 -0.02 0.40 16 24 H 0.02 1.13 8.03 -2.39 -0.02 1.11 16 25 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.10 3.36 8.07 -2.39 -0.02 3.34 16 27 H 0.09 3.46 8.04 -2.39 -0.02 3.44 16 28 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.11 2.82 7.95 -2.39 -0.02 2.81 16 30 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 31 H 0.08 2.16 7.83 -2.39 -0.02 2.14 16 32 H 0.15 2.20 7.95 -2.91 -0.02 2.18 16 33 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.09 303.87 5.03 -70.06 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.06 Total: 3.84 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.31 Total: 4.59 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.35 Total: -105.41 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.02 Total: -22.57 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -75.09 5.03 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259895755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.175 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds