Wall clock time and date at job start Mon Mar 30 2020 03:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46805 * 2 1 4 4 C 1.50694 * 109.47611 * 240.00119 * 2 1 3 5 5 H 1.08009 * 120.00019 * 245.45722 * 4 2 1 6 6 C 1.37871 * 120.00403 * 65.45623 * 4 2 1 7 7 N 1.31513 * 119.99975 * 9.56152 * 6 4 2 8 8 Si 1.86800 * 120.00463 * 189.56269 * 6 4 2 9 9 H 1.48500 * 109.47071 * 84.98881 * 8 6 4 10 10 H 1.48492 * 109.47346 * 204.99563 * 8 6 4 11 11 H 1.48510 * 109.47065 * 324.99456 * 8 6 4 12 12 N 1.46501 * 109.47141 * 119.99450 * 2 1 3 13 13 C 1.39000 * 120.00273 * 275.00230 * 12 2 1 14 14 C 1.39140 * 119.75715 * 0.02562 * 13 12 2 15 15 C 1.38383 * 119.03540 * 180.02562 * 14 13 12 16 16 C 1.38383 * 118.76048 * 359.87338 * 15 14 13 17 17 C 1.38303 * 119.15644 * 359.92029 * 16 15 14 18 18 N 1.31910 * 120.89252 * 0.44326 * 17 16 15 19 19 C 1.50522 * 121.41366 * 180.19923 * 16 15 14 20 20 O 1.42788 * 110.13032 * 344.00338 * 19 16 15 21 21 C 1.43198 * 113.27952 * 51.82582 * 20 19 16 22 22 C 1.50458 * 119.67843 * 179.77910 * 15 14 13 23 23 H 1.09003 * 109.47728 * 303.65656 * 1 2 3 24 24 H 1.09004 * 109.47320 * 63.66359 * 1 2 3 25 25 H 1.09001 * 109.46765 * 183.65837 * 1 2 3 26 26 H 0.96998 * 120.00685 * 180.02562 * 7 6 4 27 27 H 0.97004 * 119.99727 * 95.00631 * 12 2 1 28 28 H 1.08000 * 120.48480 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.55880 * 180.12132 * 17 16 15 30 30 H 1.09000 * 109.35880 * 104.20335 * 19 16 15 31 31 H 1.08996 * 109.36215 * 223.79855 * 19 16 15 32 32 H 1.09007 * 109.61936 * 49.00086 * 21 20 19 33 33 H 1.09002 * 109.62459 * 169.36514 * 21 20 19 34 34 H 1.08997 * 109.44634 * 43.35798 * 22 15 14 35 35 H 1.09009 * 109.40942 * 283.44880 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.2993 1.0355 -2.5936 8 14 2.1761 -1.1781 -4.0101 9 1 1.0242 -2.0612 -4.3239 10 1 2.4228 -0.2615 -5.1520 11 1 3.3847 -2.0073 -3.7708 12 7 2.0183 -0.6905 1.1962 13 6 2.1510 0.0030 2.3936 14 6 1.8181 1.3528 2.4504 15 6 1.9565 2.0287 3.6500 16 6 2.4199 1.3363 4.7548 17 6 2.7281 -0.0060 4.6282 18 7 2.5940 -0.6255 3.4714 19 6 2.5889 2.0112 6.0896 20 8 2.5738 3.4299 5.9283 21 6 1.4413 3.9036 5.1909 22 6 1.6054 3.4898 3.7266 23 1 -0.3635 0.5695 0.8554 24 1 -0.3634 0.4559 -0.9210 25 1 -0.3633 -1.0256 0.0656 26 1 1.1317 1.4104 -3.4723 27 1 2.2491 -1.6317 1.1527 28 1 1.4577 1.8657 1.5710 29 1 3.0884 -0.5532 5.4868 30 1 1.7746 1.7140 6.7504 31 1 3.5384 1.7077 6.5304 32 1 0.5304 3.4628 5.5960 33 1 1.3857 4.9898 5.2633 34 1 0.6719 3.6672 3.1926 35 1 2.4018 4.0781 3.2704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260208358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:25 Heat of formation + Delta-G solvation = -35.153691 kcal Electronic energy + Delta-G solvation = -17822.844436 eV Core-core repulsion = 15012.495616 eV Total energy + Delta-G solvation = -2810.348820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60364 -39.32012 -37.43143 -34.77088 -34.47928 -32.47639 -30.96562 -29.92047 -27.33642 -26.18606 -25.01290 -23.99838 -22.48359 -21.03763 -19.15737 -17.88269 -17.78808 -17.26686 -16.67825 -16.35160 -16.16124 -15.63550 -15.39725 -15.07337 -14.44771 -14.25693 -14.02165 -13.87146 -13.66325 -13.32390 -13.06057 -12.88107 -12.70170 -12.40017 -12.38485 -12.12025 -11.83682 -11.21984 -10.93249 -10.70712 -10.52325 -10.32361 -10.18991 -8.40050 -8.23942 -6.37430 0.40331 0.51712 1.41215 1.42351 1.51574 2.31581 2.58456 2.93033 3.02941 3.06880 3.62755 3.81363 3.96012 4.06757 4.23591 4.32078 4.36003 4.59441 4.62676 4.68754 4.77928 4.84650 4.87341 4.92373 4.97050 5.04924 5.15905 5.27322 5.47793 5.57984 5.66639 5.84285 6.00385 6.20158 6.25431 6.69794 6.96990 7.26670 7.41251 8.82304 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.039713 B = 0.005122 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.891750 B = 5464.882491 C = 5892.698252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.279 3.721 3 H 0.019 0.981 4 C -0.553 4.553 5 H 0.060 0.940 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.708 5.708 13 C 0.393 3.607 14 C -0.262 4.262 15 C 0.002 3.998 16 C -0.258 4.258 17 C 0.156 3.844 18 N -0.577 5.577 19 C 0.122 3.878 20 O -0.393 6.393 21 C 0.064 3.936 22 C -0.119 4.119 23 H 0.028 0.972 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.268 0.732 27 H 0.395 0.605 28 H 0.117 0.883 29 H 0.188 0.812 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 3.831 14.940 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.176 3.824 3 H 0.037 0.963 4 C -0.591 4.591 5 H 0.078 0.922 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.335 5.335 13 C 0.157 3.843 14 C -0.288 4.288 15 C -0.005 4.005 16 C -0.264 4.264 17 C -0.004 4.004 18 N -0.296 5.296 19 C 0.045 3.955 20 O -0.312 6.312 21 C -0.012 4.012 22 C -0.156 4.156 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.229 0.771 28 H 0.135 0.865 29 H 0.205 0.795 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.310 3.331 14.571 14.950 hybrid contribution -0.212 -0.213 -1.537 1.566 sum -0.522 3.118 13.034 13.412 Atomic orbital electron populations 1.21937 0.98266 0.99295 0.99643 1.18468 0.90751 0.92418 0.80803 0.96305 1.21442 1.37310 1.08963 0.91362 0.92189 1.25633 0.94644 0.95523 1.01818 1.70046 1.44796 1.15006 1.25135 0.85485 0.78778 0.78512 0.78367 1.19612 1.20712 1.19544 1.45178 1.69114 1.12571 1.06639 1.18749 0.89668 0.89145 0.86767 1.21370 1.13278 0.94445 0.99706 1.19766 0.92520 0.96597 0.91641 1.21028 1.10349 0.96567 0.98425 1.22771 0.92287 0.91357 0.93952 1.67213 1.22166 1.40404 0.99787 1.21291 1.03985 0.79389 0.90811 1.88004 1.46655 1.21725 1.74804 1.22737 0.88774 1.01302 0.88377 1.21214 1.03440 0.90670 1.00306 0.95281 0.92654 0.94450 0.92304 0.77132 0.86520 0.79527 0.90350 0.86312 0.91639 0.85961 0.88656 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 9.29 71.98 0.67 -5.61 16 2 C 0.28 14.05 2.11 44.24 0.09 14.14 16 3 H 0.02 1.07 6.40 -2.38 -0.02 1.05 16 4 C -0.55 -29.73 8.66 25.60 0.22 -29.51 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 1.33 5.17 84.65 0.44 1.77 16 7 N -0.91 -50.79 12.16 21.45 0.26 -50.52 16 8 Si 0.96 42.25 29.55 68.60 2.03 44.28 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.71 -32.06 5.24 -328.11 -1.72 -33.77 16 13 C 0.39 16.56 7.63 133.07 1.02 17.58 16 14 C -0.26 -10.44 8.54 22.52 0.19 -10.25 16 15 C 0.00 0.08 5.78 -19.87 -0.11 -0.04 16 16 C -0.26 -7.28 5.81 -19.87 -0.12 -7.39 16 17 C 0.16 4.59 10.84 84.70 0.92 5.51 16 18 N -0.58 -21.90 10.39 -193.08 -2.01 -23.91 16 19 C 0.12 2.50 6.70 71.18 0.48 2.98 16 20 O -0.39 -9.09 10.79 -148.98 -1.61 -10.70 16 21 C 0.06 1.26 6.85 72.00 0.49 1.76 16 22 C -0.12 -3.00 6.05 29.79 0.18 -2.82 16 23 H 0.03 1.26 7.63 -2.39 -0.02 1.24 16 24 H 0.05 2.82 6.83 -2.39 -0.02 2.80 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.39 17.32 8.65 -92.71 -0.80 16.52 16 28 H 0.12 5.02 6.03 -2.91 -0.02 5.01 16 29 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.14 8.07 -2.38 -0.02 1.13 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -62.38 289.44 1.72 -60.65 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.30 Total: 25.85 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.47 Total: -11.88 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.46 Total: -108.21 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.61 Total: -10.70 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -62.38 1.72 -60.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.501 kcal (2) G-P(sol) polarization free energy of solvation -62.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds