Wall clock time and date at job start Mon Mar 30 2020 03:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36927 * 119.99986 * 2 1 4 4 H 1.08010 * 119.99744 * 200.40449 * 3 2 1 5 5 C 1.38806 * 120.00424 * 20.40624 * 3 2 1 6 6 N 1.31627 * 119.99707 * 14.98647 * 5 3 2 7 7 Si 1.86796 * 120.00424 * 194.98935 * 5 3 2 8 8 H 1.48499 * 109.47325 * 85.00139 * 7 5 3 9 9 H 1.48500 * 109.47263 * 205.00115 * 7 5 3 10 10 H 1.48508 * 109.47135 * 325.00195 * 7 5 3 11 11 C 1.46506 * 119.99565 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.54398 * 179.80496 * 11 2 1 13 13 C 1.53016 * 109.62496 * 59.57098 * 11 2 1 14 14 C 1.53266 * 111.22344 * 172.80761 * 13 11 2 15 15 C 1.50471 * 108.81856 * 53.31694 * 14 13 11 16 16 C 1.32905 * 131.52683 * 159.76621 * 15 14 13 17 17 N 1.37072 * 109.00387 * 180.47905 * 16 15 14 18 18 C 1.46494 * 124.74698 * 179.97438 * 17 16 15 19 19 C 1.35169 * 110.51409 * 359.97438 * 17 16 15 20 20 C 1.36153 * 107.75781 * 359.86697 * 19 17 16 21 21 C 1.46827 * 132.83034 * 180.37742 * 20 19 17 22 22 O 1.21343 * 122.67643 * 348.00816 * 21 20 19 23 23 H 1.08997 * 109.46972 * 275.12582 * 1 2 3 24 24 H 1.08996 * 109.46857 * 35.12880 * 1 2 3 25 25 H 1.09001 * 109.46968 * 155.12663 * 1 2 3 26 26 H 0.97003 * 119.99685 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.12663 * 293.25398 * 13 11 2 28 28 H 1.08995 * 109.12796 * 52.41633 * 13 11 2 29 29 H 1.09002 * 109.57510 * 173.11553 * 14 13 11 30 30 H 1.08995 * 109.58358 * 293.37470 * 14 13 11 31 31 H 1.08005 * 125.49724 * 0.75013 * 16 15 14 32 32 H 1.09002 * 109.46975 * 89.99859 * 18 17 16 33 33 H 1.08990 * 109.47602 * 210.00221 * 18 17 16 34 34 H 1.09002 * 109.46773 * 330.00375 * 18 17 16 35 35 H 1.08001 * 126.12455 * 179.86370 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1789 1.2151 -0.3261 5 6 1.5211 2.3502 0.4191 6 7 0.3883 2.2831 1.0861 7 14 2.2825 4.0125 0.0366 8 1 1.8674 4.4464 -1.3216 9 1 1.8231 5.0094 1.0367 10 1 3.7626 3.9032 0.0905 11 6 2.1975 -1.2688 0.0006 12 1 3.2694 -1.0711 -0.0030 13 6 1.8222 -2.0794 -1.2418 14 6 2.6960 -3.3318 -1.3720 15 6 2.6271 -4.1077 -0.0845 16 6 2.8936 -5.3798 0.1929 17 7 2.6634 -5.6037 1.5255 18 6 2.8476 -6.8911 2.1998 19 6 2.2428 -4.4705 2.1305 20 6 2.1979 -3.4888 1.1882 21 6 1.8313 -2.0681 1.2435 22 8 1.2797 -1.5708 2.2031 23 1 -0.3633 0.0918 1.0235 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3633 -0.9324 -0.4323 26 1 -0.0508 3.0968 1.3793 27 1 0.7767 -2.3792 -1.1703 28 1 1.9557 -1.4582 -2.1274 29 1 2.3286 -3.9500 -2.1911 30 1 3.7271 -3.0390 -1.5696 31 1 3.2401 -6.1171 -0.5162 32 1 3.8678 -6.9609 2.5773 33 1 2.1466 -6.9697 3.0307 34 1 2.6655 -7.7008 1.4931 35 1 1.9879 -4.3630 3.1744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260857438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:10 Heat of formation + Delta-G solvation = 43.380552 kcal Electronic energy + Delta-G solvation = -18227.854322 eV Core-core repulsion = 15420.911003 eV Total energy + Delta-G solvation = -2806.943320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07582 -38.16961 -35.63071 -34.21987 -31.76624 -30.44835 -29.25192 -26.51633 -26.30364 -25.73584 -22.58777 -21.83240 -20.19169 -19.47216 -17.59043 -16.77555 -16.49843 -15.37011 -15.01998 -14.75783 -14.17863 -13.83261 -13.70924 -13.38004 -12.99818 -12.89327 -12.68424 -12.36952 -12.18705 -11.75787 -11.55710 -11.12340 -10.85023 -10.70727 -10.38959 -10.31866 -10.25431 -9.81682 -9.71531 -8.68877 -8.34528 -8.13413 -8.12115 -6.60425 -5.56327 -3.01346 2.01178 2.60197 2.93203 3.47801 3.52756 3.54929 3.89716 4.55468 4.61962 4.96282 4.96608 5.05449 5.11889 5.19799 5.41679 5.49030 5.56206 5.71579 5.79837 6.05291 6.06706 6.23293 6.38796 6.40698 6.47439 6.85689 6.87244 7.00063 7.06926 7.24272 7.40988 7.54490 7.90179 8.02658 8.47699 8.73534 9.36655 10.00029 10.48641 11.47671 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.041918 B = 0.005822 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.802667 B = 4808.199294 C = 5064.163867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.581 5.581 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.899 5.899 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.144 3.856 12 H 0.090 0.910 13 C -0.119 4.119 14 C -0.044 4.044 15 C -0.130 4.130 16 C -0.019 4.019 17 N -0.462 5.462 18 C 0.074 3.926 19 C 0.066 3.934 20 C -0.254 4.254 21 C 0.398 3.602 22 O -0.444 6.444 23 H 0.036 0.964 24 H 0.042 0.958 25 H -0.005 1.005 26 H 0.251 0.749 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -18.533 -2.267 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.302 5.302 3 C -0.387 4.387 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.543 5.543 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.034 3.966 12 H 0.108 0.892 13 C -0.159 4.159 14 C -0.082 4.082 15 C -0.136 4.136 16 C -0.143 4.143 17 N -0.141 5.141 18 C -0.068 4.068 19 C -0.066 4.066 20 C -0.263 4.263 21 C 0.272 3.728 22 O -0.317 6.317 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.014 0.986 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.726 -18.392 -1.551 19.052 hybrid contribution 0.389 0.671 0.031 0.776 sum 5.115 -17.721 -1.520 18.507 Atomic orbital electron populations 1.20797 0.82308 0.95053 0.99917 1.43839 1.01963 0.99509 1.84840 1.19226 0.97155 0.84727 1.37592 0.91198 1.25006 0.97960 0.98291 0.98316 1.70149 1.18739 1.26532 1.38902 0.86279 0.78602 0.84176 0.77484 1.21513 1.21855 1.20609 1.20993 0.97727 0.86971 0.90956 0.89220 1.21936 0.99466 0.95076 0.99418 1.19959 1.00450 0.95332 0.92451 1.20729 1.04134 0.93208 0.95506 1.20870 1.10910 0.97821 0.84680 1.43819 1.53155 1.09005 1.08141 1.21993 1.02731 0.83571 0.98467 1.21691 1.01681 0.84695 0.98536 1.21892 1.13574 0.96954 0.93920 1.23542 0.74703 0.85626 0.88965 1.90503 1.31909 1.74367 1.34937 0.94517 0.93950 0.98606 0.93872 0.92355 0.90827 0.91441 0.90922 0.82198 0.91196 0.90026 0.90038 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.42 7.93 59.85 0.47 4.89 16 2 N -0.58 -15.61 2.61 -173.91 -0.45 -16.06 16 3 C -0.26 -7.42 9.61 -15.07 -0.14 -7.57 16 4 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 5 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 6 N -0.90 -27.90 10.67 55.49 0.59 -27.31 16 7 Si 0.90 22.66 29.58 -169.99 -5.03 17.64 16 8 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 9 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.14 3.19 2.75 -68.30 -0.19 3.00 16 12 H 0.09 1.96 7.85 -51.93 -0.41 1.55 16 13 C -0.12 -2.13 4.88 -26.59 -0.13 -2.26 16 14 C -0.04 -0.61 6.28 -27.86 -0.17 -0.79 16 15 C -0.13 -1.96 6.19 -102.63 -0.64 -2.59 16 16 C -0.02 -0.23 11.29 -17.05 -0.19 -0.42 16 17 N -0.46 -5.48 3.11 -124.82 -0.39 -5.87 16 18 C 0.07 0.51 11.04 59.84 0.66 1.17 16 19 C 0.07 0.99 11.43 -16.83 -0.19 0.80 16 20 C -0.25 -4.61 6.29 -103.23 -0.65 -5.26 16 21 C 0.40 8.99 6.61 -30.07 -0.20 8.79 16 22 O -0.44 -11.87 16.83 5.50 0.09 -11.78 16 23 H 0.04 1.11 7.13 -51.93 -0.37 0.74 16 24 H 0.04 1.19 7.22 -51.93 -0.37 0.82 16 25 H 0.00 -0.11 6.55 -51.93 -0.34 -0.45 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.16 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.08 0.41 8.13 -51.93 -0.42 -0.02 16 35 H 0.17 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -35.72 290.18 -7.05 -42.77 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.78 Total: -3.54 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.46 Total: -0.22 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.25 Total: -49.24 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.72 -7.05 -42.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.151 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds