Wall clock time and date at job start Mon Mar 30 2020 03:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36230 * 119.60592 * 2 1 4 4 N 1.37562 * 119.78005 * 0.02562 * 3 2 1 5 5 C 1.46495 * 120.00384 * 7.72248 * 4 3 2 6 6 C 1.52998 * 109.47344 * 180.02562 * 5 4 3 7 7 C 1.50695 * 115.54664 * 269.79130 * 6 5 4 8 8 H 1.07997 * 120.00307 * 95.35260 * 7 6 5 9 9 C 1.37883 * 119.99871 * 275.34600 * 7 6 5 10 10 N 1.31515 * 120.00000 * 5.23175 * 9 7 6 11 11 Si 1.86807 * 119.99957 * 185.22720 * 9 7 6 12 12 H 1.48497 * 109.46984 * 90.00485 * 11 9 7 13 13 H 1.48496 * 109.47191 * 210.00463 * 11 9 7 14 14 H 1.48496 * 109.47171 * 330.00270 * 11 9 7 15 15 C 1.52993 * 117.49914 * 124.08329 * 6 5 4 16 16 C 1.52996 * 60.00076 * 252.51181 * 15 6 5 17 17 C 1.37860 * 120.43243 * 179.72286 * 3 2 1 18 18 C 1.39376 * 119.67523 * 0.52869 * 17 3 2 19 19 C 1.37898 * 119.24177 * 359.49734 * 18 17 3 20 20 C 1.34609 * 119.60181 * 180.02562 * 2 1 3 21 21 O 1.22120 * 119.84341 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.47119 * 182.52963 * 1 2 3 23 23 H 1.09003 * 109.46781 * 302.53071 * 1 2 3 24 24 H 1.08999 * 109.46890 * 62.52919 * 1 2 3 25 25 H 0.96998 * 119.99458 * 187.71531 * 4 3 2 26 26 H 1.09000 * 109.46885 * 300.03159 * 5 4 3 27 27 H 1.09003 * 109.47462 * 60.02790 * 5 4 3 28 28 H 0.96996 * 119.99698 * 184.99495 * 10 9 7 29 29 H 1.09002 * 117.50491 * 359.97438 * 15 6 5 30 30 H 1.08999 * 117.50156 * 145.02403 * 15 6 5 31 31 H 1.09007 * 117.49977 * 252.51299 * 16 15 6 32 32 H 1.09000 * 117.52327 * 107.48140 * 16 15 6 33 33 H 1.08005 * 120.16005 * 180.27950 * 17 3 2 34 34 H 1.08006 * 120.37746 * 179.77453 * 18 17 3 35 35 H 1.08001 * 120.22777 * 180.27226 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1381 1.1844 0.0000 4 7 1.4375 2.3683 0.0005 5 6 -0.0174 2.3585 0.1716 6 6 -0.5450 3.7942 0.1339 7 6 -0.6160 4.4956 1.4657 8 1 0.1949 5.1341 1.7837 9 6 -1.7164 4.3224 2.2783 10 7 -2.6558 3.4666 1.9396 11 14 -1.8727 5.3031 3.8606 12 1 -2.5865 6.5759 3.5855 13 1 -2.6366 4.5131 4.8592 14 1 -0.5193 5.6000 4.3947 15 6 -1.6274 4.1221 -0.8964 16 6 -0.2017 4.6410 -1.0932 17 6 3.5165 1.2043 0.0057 18 6 4.2240 0.0035 0.0004 19 6 3.5292 -1.1877 0.0000 20 6 2.1300 -1.1704 -0.0005 21 8 1.5092 -2.2220 -0.0005 22 1 -0.3633 -1.0267 0.0454 23 1 -0.3633 0.5527 0.8665 24 1 -0.3633 0.4741 -0.9118 25 1 1.9070 3.2096 -0.1122 26 1 -0.4739 1.7823 -0.6332 27 1 -0.2675 1.9046 1.1305 28 1 -3.4634 3.3970 2.4723 29 1 -1.9634 3.3153 -1.5478 30 1 -2.3913 4.8454 -0.6111 31 1 -0.0275 5.7057 -0.9372 32 1 0.4005 4.1755 -1.8735 33 1 4.0456 2.1459 0.0103 34 1 5.3040 0.0059 0.0012 35 1 4.0613 -2.1275 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309474292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:49 Heat of formation + Delta-G solvation = 46.284824 kcal Electronic energy + Delta-G solvation = -18214.647123 eV Core-core repulsion = 15407.829742 eV Total energy + Delta-G solvation = -2806.817381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.47456 -39.45545 -37.99118 -35.86837 -34.73189 -33.97219 -30.76193 -28.93388 -27.78524 -25.90551 -24.25870 -23.53187 -22.81088 -21.16862 -18.69147 -18.24280 -18.16539 -17.57141 -17.23942 -16.60718 -16.21159 -15.71136 -15.61452 -15.30749 -15.09168 -14.63992 -13.80320 -13.56698 -13.23522 -13.16189 -13.03858 -12.87768 -12.79157 -12.49591 -12.24075 -12.02607 -11.27560 -11.08347 -11.02650 -10.86737 -10.44477 -10.08283 -9.85538 -8.18549 -8.14679 -6.26150 0.20778 1.08261 1.39476 1.44473 1.50011 1.53698 2.32929 2.40513 2.83716 3.15064 3.49069 3.72101 3.98783 4.04291 4.21867 4.29772 4.50572 4.57543 4.58940 4.62074 4.66785 4.73580 4.76808 4.98287 5.03892 5.26166 5.27355 5.58516 5.61215 5.62634 5.68972 5.74247 5.89274 6.21033 6.33930 6.71790 6.82791 7.12536 7.43726 8.91889 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.006246 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.729577 B = 4481.778767 C = 4591.033223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.515 5.515 3 C 0.454 3.546 4 N -0.698 5.698 5 C 0.139 3.861 6 C 0.004 3.996 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.031 3.969 10 N -0.901 5.901 11 Si 0.939 3.061 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.270 1.270 15 C -0.157 4.157 16 C -0.178 4.178 17 C -0.330 4.330 18 C 0.058 3.942 19 C -0.357 4.357 20 C 0.511 3.489 21 O -0.623 6.623 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.427 0.573 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.260 0.740 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 0.061 -5.003 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.232 5.232 3 C 0.235 3.765 4 N -0.327 5.327 5 C 0.017 3.983 6 C 0.003 3.997 7 C -0.546 4.546 8 H 0.074 0.926 9 C -0.170 4.170 10 N -0.538 5.538 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.194 1.194 15 C -0.196 4.196 16 C -0.216 4.216 17 C -0.357 4.357 18 C 0.035 3.965 19 C -0.380 4.380 20 C 0.320 3.680 21 O -0.513 6.513 22 H 0.101 0.899 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.268 0.732 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.301 -0.693 -4.872 10.523 hybrid contribution -0.774 0.768 1.018 1.492 sum 8.528 0.075 -3.854 9.358 Atomic orbital electron populations 1.23345 0.77997 1.05230 1.05047 1.45442 1.09214 1.06190 1.62363 1.18532 0.90459 0.79605 0.87938 1.44778 1.07780 1.05228 1.74920 1.22276 0.78303 0.97972 0.99762 1.19103 0.99754 0.91258 0.89565 1.20726 1.04419 1.27997 1.01462 0.92617 1.25541 0.96216 0.95333 0.99931 1.70053 1.08284 1.34545 1.40945 0.85847 0.78146 0.78902 0.80520 1.20430 1.21708 1.19448 1.22487 0.91694 1.02406 1.02964 1.22982 0.98296 0.99615 1.00668 1.20501 0.88053 1.01363 1.25794 1.21603 1.01573 0.89781 0.83497 1.21783 0.90748 1.00965 1.24537 1.17366 0.90388 0.81396 0.78855 1.90853 1.71036 1.30978 1.58478 0.89878 0.88412 0.88369 0.73245 0.90773 0.92667 0.93089 0.90433 0.92225 0.90054 0.88595 0.81407 0.81073 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 8.60 127.77 1.10 1.91 16 2 N -0.51 -17.49 3.00 -671.81 -2.01 -19.50 16 3 C 0.45 13.30 7.39 132.06 0.98 14.27 16 4 N -0.70 -20.50 5.52 -344.40 -1.90 -22.40 16 5 C 0.14 5.01 4.27 86.38 0.37 5.38 16 6 C 0.00 0.16 1.47 -52.93 -0.08 0.08 16 7 C -0.51 -24.16 8.77 25.60 0.22 -23.93 16 8 H 0.06 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.03 1.54 5.40 84.66 0.46 2.00 16 10 N -0.90 -46.76 12.91 21.45 0.28 -46.48 16 11 Si 0.94 40.35 29.54 68.60 2.03 42.37 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 15 C -0.16 -6.25 9.38 30.59 0.29 -5.97 16 16 C -0.18 -6.06 9.43 30.59 0.29 -5.77 16 17 C -0.33 -7.69 9.88 22.45 0.22 -7.47 16 18 C 0.06 1.28 10.12 22.46 0.23 1.50 16 19 C -0.36 -10.65 10.01 22.60 0.23 -10.43 16 20 C 0.51 19.14 7.39 84.68 0.63 19.76 16 21 O -0.62 -28.04 16.37 -5.71 -0.09 -28.14 16 22 H 0.08 2.95 6.85 -2.39 -0.02 2.94 16 23 H 0.10 3.50 4.84 -2.39 -0.01 3.49 16 24 H 0.10 2.99 5.76 -2.39 -0.01 2.98 16 25 H 0.43 11.09 8.12 -92.71 -0.75 10.33 16 26 H 0.07 2.52 4.45 -2.39 -0.01 2.51 16 27 H 0.06 2.33 5.78 -2.39 -0.01 2.32 16 28 H 0.26 13.18 8.32 -92.71 -0.77 12.41 16 29 H 0.08 2.85 8.03 -2.39 -0.02 2.83 16 30 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 32 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -60.56 289.33 3.58 -56.97 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.36 Total: 25.83 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.92 Total: -8.66 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -3.64 Total: -88.38 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.09 Total: -28.14 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -60.56 3.58 -56.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309474292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.260 kcal (2) G-P(sol) polarization free energy of solvation -60.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds