Wall clock time and date at job start Mon Mar 30 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00289 * 2 1 4 4 O 1.21605 * 120.00128 * 359.97438 * 3 2 1 5 5 C 1.47435 * 120.00058 * 179.97438 * 3 2 1 6 6 C 1.39731 * 120.20902 * 5.87327 * 5 3 2 7 7 C 1.37751 * 119.92645 * 180.25251 * 6 5 3 8 8 C 1.38607 * 120.35300 * 359.74778 * 7 6 5 9 9 C 1.37957 * 120.42287 * 359.97438 * 8 7 6 10 10 C 1.38958 * 120.06295 * 0.02562 * 9 8 7 11 11 N 1.38877 * 120.17393 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99944 * 354.34504 * 11 10 9 13 13 C 1.52999 * 109.46883 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47225 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99685 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99936 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00539 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47146 * 89.99762 * 18 16 14 20 20 H 1.48505 * 109.47125 * 209.99942 * 18 16 14 21 21 H 1.48498 * 109.47131 * 329.99840 * 18 16 14 22 22 H 1.09002 * 109.47122 * 300.00424 * 1 2 3 23 23 H 1.09001 * 109.46773 * 60.00005 * 1 2 3 24 24 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99979 * 179.97438 * 2 1 3 26 26 H 1.08008 * 120.03941 * 359.96959 * 6 5 3 27 27 H 1.07999 * 119.82099 * 179.76309 * 7 6 5 28 28 H 1.07998 * 119.78889 * 180.02562 * 8 7 6 29 29 H 1.07999 * 119.96783 * 180.02562 * 9 8 7 30 30 H 0.97000 * 119.99954 * 174.34371 * 11 10 9 31 31 H 1.08990 * 109.47474 * 59.99846 * 12 11 10 32 32 H 1.09002 * 109.47092 * 299.99360 * 12 11 10 33 33 H 1.09005 * 109.47319 * 299.99625 * 13 12 11 34 34 H 1.09001 * 109.47457 * 60.00014 * 13 12 11 35 35 H 0.96996 * 120.00366 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2203 -0.0005 5 6 3.6132 1.1671 0.0006 6 6 4.3163 -0.0342 -0.1225 7 6 5.6938 -0.0280 -0.1160 8 6 6.3883 1.1652 0.0068 9 6 5.7088 2.3602 0.1234 10 6 4.3193 2.3742 0.1189 11 7 3.6330 3.5758 0.2367 12 6 4.3681 4.8174 0.4901 13 6 3.3830 5.9849 0.5749 14 6 4.1390 7.2622 0.8363 15 1 5.2146 7.2429 0.9327 16 6 3.4577 8.4551 0.9522 17 7 2.1480 8.4786 0.8353 18 14 4.3948 10.0382 1.2769 19 1 4.7711 10.6647 -0.0158 20 1 3.5361 10.9724 2.0485 21 1 5.6221 9.7359 2.0563 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.9500 -0.8401 0.0004 26 1 3.7803 -0.9670 -0.2179 27 1 6.2354 -0.9579 -0.2073 28 1 7.4683 1.1595 0.0104 29 1 6.2574 3.2856 0.2183 30 1 2.6670 3.5929 0.1511 31 1 5.0724 4.9950 -0.3224 32 1 4.9124 4.7318 1.4307 33 1 2.8389 6.0704 -0.3658 34 1 2.6783 5.8076 1.3873 35 1 1.6687 9.3179 0.9165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309675248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:35 Heat of formation + Delta-G solvation = -14.826645 kcal Electronic energy + Delta-G solvation = -17376.671163 eV Core-core repulsion = 14567.203790 eV Total energy + Delta-G solvation = -2809.467373 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20558 -38.16614 -35.80860 -34.47167 -32.99447 -31.22482 -30.39354 -28.04860 -26.69799 -24.51861 -23.40027 -21.61281 -20.99184 -19.99157 -18.05037 -16.83726 -16.20562 -15.86074 -15.24075 -15.15071 -14.71214 -14.40896 -14.10951 -13.93686 -13.35371 -13.05268 -13.04362 -12.35935 -12.28524 -12.23155 -11.83308 -11.31936 -11.07654 -10.90836 -10.60904 -10.53498 -9.68308 -9.52725 -9.51172 -9.23806 -9.20483 -8.79514 -8.39398 -7.00094 -6.03940 -4.08049 1.13788 1.85814 3.06393 3.26301 3.31047 3.36960 3.40124 4.07945 4.15584 4.46231 4.82321 4.93714 5.12852 5.21205 5.32178 5.45004 5.52531 5.61936 5.73039 5.85169 6.04907 6.21334 6.28843 6.34054 6.43663 6.52196 6.70685 6.76192 7.02516 7.44240 7.55144 7.70010 7.81980 7.99572 8.16540 8.32382 8.63995 8.98045 9.56248 11.07614 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.025059 B = 0.005074 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.074436 B = 5517.256117 C = 6602.242345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.568 3.432 4 O -0.542 6.542 5 C -0.249 4.249 6 C -0.034 4.034 7 C -0.211 4.211 8 C -0.041 4.041 9 C -0.213 4.213 10 C 0.286 3.714 11 N -0.710 5.710 12 C 0.114 3.886 13 C 0.014 3.986 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.399 0.601 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.419 0.581 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -19.967 -1.902 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.359 3.641 4 O -0.421 6.421 5 C -0.258 4.258 6 C -0.053 4.053 7 C -0.232 4.232 8 C -0.060 4.060 9 C -0.236 4.236 10 C 0.170 3.830 11 N -0.341 5.341 12 C -0.009 4.009 13 C -0.024 4.024 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.530 5.530 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.348 -18.834 -1.850 19.070 hybrid contribution 0.315 0.465 0.134 0.577 sum 2.663 -18.370 -1.717 18.641 Atomic orbital electron populations 1.21514 0.79603 1.01851 1.02575 1.45604 1.07568 1.08540 1.77155 1.18252 0.87198 0.83426 0.75174 1.90495 1.69732 1.30681 1.51195 1.19124 0.91678 0.93495 1.21483 1.20865 0.94416 0.95411 0.94615 1.20627 0.93735 0.97920 1.10913 1.21020 0.99429 0.91967 0.93604 1.20780 0.92062 0.99233 1.11526 1.17978 0.91438 0.85865 0.87724 1.46286 1.12316 1.04220 1.71300 1.21845 0.96547 0.83561 0.98958 1.19267 0.94274 0.90741 0.98091 1.21032 0.93528 0.91770 1.49812 0.92336 1.25013 0.94867 0.99270 0.95166 1.69976 1.06614 1.26725 1.49674 0.86520 0.79715 0.83016 0.78312 1.20579 1.21166 1.19775 0.92143 0.92177 0.90913 0.76609 0.86618 0.86478 0.86187 0.85278 0.73336 0.92963 0.92963 0.95880 0.95881 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.70 59.84 0.64 1.51 16 2 N -0.74 -8.32 5.66 -68.18 -0.39 -8.71 16 3 C 0.57 9.10 7.75 -12.52 -0.10 9.00 16 4 O -0.54 -10.88 13.64 5.27 0.07 -10.81 16 5 C -0.25 -3.85 5.89 -104.80 -0.62 -4.47 16 6 C -0.03 -0.40 9.52 -39.20 -0.37 -0.77 16 7 C -0.21 -2.39 10.02 -39.62 -0.40 -2.79 16 8 C -0.04 -0.51 10.03 -39.55 -0.40 -0.90 16 9 C -0.21 -3.29 9.30 -39.42 -0.37 -3.66 16 10 C 0.29 5.07 6.65 -83.61 -0.56 4.51 16 11 N -0.71 -14.59 5.59 -58.45 -0.33 -14.92 16 12 C 0.11 2.49 4.88 -4.04 -0.02 2.47 16 13 C 0.01 0.37 5.09 -27.88 -0.14 0.22 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.40 3.17 6.89 -40.82 -0.28 2.89 16 26 H 0.12 0.94 6.45 -52.48 -0.34 0.60 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.13 1.97 6.72 -52.49 -0.35 1.62 16 30 H 0.42 9.29 4.99 -40.94 -0.20 9.09 16 31 H 0.05 1.10 7.72 -51.93 -0.40 0.69 16 32 H 0.05 1.11 8.13 -51.93 -0.42 0.68 16 33 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -33.05 297.20 -7.68 -40.73 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.50 Total: 7.44 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.74 Total: -8.46 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.02 Total: -50.07 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.05 -7.68 -40.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309675248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.908 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds