Wall clock time and date at job start Mon Mar 30 2020 04:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36972 * 120.00169 * 2 1 4 4 H 1.07999 * 120.00325 * 184.41860 * 3 2 1 5 5 C 1.38982 * 119.99610 * 4.42075 * 3 2 1 6 6 N 1.31411 * 119.99859 * 325.29859 * 5 3 2 7 7 Si 1.86794 * 119.99685 * 145.30100 * 5 3 2 8 8 H 1.48504 * 109.47558 * 94.99918 * 7 5 3 9 9 H 1.48507 * 109.46917 * 214.99671 * 7 5 3 10 10 H 1.48499 * 109.47305 * 334.99691 * 7 5 3 11 11 C 1.34778 * 119.99703 * 180.02562 * 2 1 3 12 12 O 1.21654 * 119.99584 * 185.72111 * 11 2 1 13 13 C 1.47182 * 120.00255 * 5.71893 * 11 2 1 14 14 C 1.46709 * 127.02151 * 34.89847 * 13 11 2 15 15 C 1.34451 * 106.39036 * 179.89045 * 14 13 11 16 16 N 1.36415 * 109.08559 * 0.38043 * 15 14 13 17 17 H 0.96999 * 124.82213 * 179.77923 * 16 15 14 18 18 C 1.34705 * 110.36383 * 359.74383 * 16 15 14 19 19 C 1.50698 * 125.90053 * 180.02562 * 18 16 15 20 20 C 1.53784 * 113.61277 * 37.48354 * 19 18 16 21 21 C 1.53783 * 87.08250 * 220.01409 * 20 19 18 22 22 C 1.53781 * 113.61837 * 299.98451 * 19 18 16 23 23 H 1.08996 * 109.47138 * 84.90323 * 1 2 3 24 24 H 1.09004 * 109.46755 * 204.90375 * 1 2 3 25 25 H 1.09000 * 109.46670 * 324.90093 * 1 2 3 26 26 H 0.97008 * 119.99739 * 180.02562 * 6 5 3 27 27 H 1.08001 * 126.80034 * 0.02562 * 14 13 11 28 28 H 1.08003 * 125.45065 * 180.12498 * 15 14 13 29 29 H 1.09000 * 112.85237 * 168.77894 * 19 18 16 30 30 H 1.08999 * 113.61711 * 334.55930 * 20 19 18 31 31 H 1.09004 * 113.61961 * 105.46879 * 20 19 18 32 32 H 1.08997 * 113.61479 * 270.88257 * 21 20 19 33 33 H 1.08999 * 113.61440 * 139.97734 * 21 20 19 34 34 H 1.09000 * 113.61194 * 254.52634 * 22 19 18 35 35 H 1.09000 * 113.61287 * 25.34929 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1500 1.1862 0.0000 4 1 3.2276 1.1876 -0.0721 5 6 1.4581 2.3880 0.0928 6 7 0.2787 2.5126 -0.4733 7 14 2.2048 3.8261 1.0220 8 1 2.9145 4.7167 0.0689 9 1 1.1275 4.5882 1.7032 10 1 3.1660 3.3168 2.0330 11 6 2.1389 -1.1672 -0.0005 12 8 3.3509 -1.1699 0.1045 13 6 1.4085 -2.4387 -0.1281 14 6 0.1980 -2.6865 -0.9191 15 6 -0.1128 -3.9824 -0.7412 16 7 0.8003 -4.5487 0.0993 17 1 0.7901 -5.4757 0.3847 18 6 1.7187 -3.6381 0.4760 19 6 2.8841 -3.8878 1.3983 20 6 3.5323 -5.2698 1.2116 21 6 3.6609 -5.3292 2.7429 22 6 2.4690 -4.3592 2.8019 23 1 -0.3633 0.0913 -1.0236 24 1 -0.3633 -0.9322 0.4328 25 1 -0.3633 0.8408 0.5909 26 1 -0.2040 3.3515 -0.4088 27 1 -0.3361 -1.9703 -1.5260 28 1 -0.9533 -4.4921 -1.1885 29 1 3.6001 -3.0660 1.4076 30 1 2.8545 -6.0182 0.8010 31 1 4.4910 -5.2361 0.6939 32 1 4.5903 -4.9023 3.1198 33 1 3.4450 -6.3122 3.1613 34 1 2.5692 -3.5904 3.5681 35 1 1.4998 -4.8574 2.8263 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336572646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:17 Heat of formation + Delta-G solvation = 42.766339 kcal Electronic energy + Delta-G solvation = -18207.233194 eV Core-core repulsion = 15400.263240 eV Total energy + Delta-G solvation = -2806.969954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83653 -38.06478 -37.67515 -34.48171 -31.70418 -30.24278 -29.22776 -26.19623 -25.51743 -25.15094 -24.09008 -21.36702 -20.48556 -19.16913 -17.92916 -17.42579 -16.67346 -15.30716 -15.25837 -14.39418 -14.19173 -14.06678 -13.89587 -13.46110 -12.69907 -12.50593 -12.43008 -12.30702 -11.97437 -11.88171 -11.45448 -11.25050 -11.17990 -10.66559 -10.53665 -10.34765 -10.30952 -10.10953 -10.02418 -8.66872 -8.31492 -8.08762 -7.71258 -7.53191 -6.39858 -3.56564 2.51586 3.04672 3.26164 3.32574 3.43282 3.61827 4.24282 4.40695 4.71108 4.78558 4.83497 5.11237 5.15804 5.29525 5.45272 5.49194 5.67119 5.73785 5.93976 5.98755 6.00522 6.10338 6.11482 6.31230 6.46374 6.60996 6.63900 6.77799 7.03785 7.31803 7.39411 7.53119 7.64748 7.93217 8.27057 8.62788 9.32705 9.60907 10.23131 10.66640 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.028233 B = 0.006672 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.506966 B = 4195.910678 C = 4870.374027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.436 5.436 3 C -0.316 4.316 4 H 0.106 0.894 5 C 0.039 3.961 6 N -0.852 5.852 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.506 3.494 12 O -0.602 6.602 13 C -0.179 4.179 14 C -0.169 4.169 15 C -0.033 4.033 16 N -0.556 5.556 17 H 0.405 0.595 18 C 0.073 3.927 19 C -0.042 4.042 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.136 4.136 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.267 0.733 27 H 0.142 0.858 28 H 0.160 0.840 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -14.041 3.741 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.153 5.153 3 C -0.443 4.443 4 H 0.124 0.876 5 C -0.166 4.166 6 N -0.490 5.490 7 Si 0.727 3.273 8 H -0.205 1.205 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.296 3.704 12 O -0.490 6.490 13 C -0.189 4.189 14 C -0.194 4.194 15 C -0.161 4.161 16 N -0.152 5.152 17 H 0.240 0.760 18 C -0.042 4.042 19 C -0.060 4.060 20 C -0.175 4.175 21 C -0.177 4.177 22 C -0.174 4.174 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.177 0.823 29 H 0.148 0.852 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.849 -13.963 3.777 14.583 hybrid contribution -0.159 0.436 0.279 0.541 sum -2.009 -13.527 4.056 14.265 Atomic orbital electron populations 1.21835 0.81199 0.99724 1.01312 1.43510 1.05559 1.04776 1.61427 1.19592 0.93379 0.81966 1.49336 0.87601 1.25149 0.95853 0.98724 0.96831 1.70292 1.15567 1.26721 1.36406 0.86339 0.79157 0.80870 0.80951 1.20509 1.20793 1.19251 1.16953 0.86487 0.82246 0.84745 1.90544 1.13851 1.86992 1.57564 1.20804 0.99033 0.94084 1.04966 1.22200 0.97999 0.95222 1.03980 1.21506 0.97957 0.94946 1.01648 1.41297 1.23074 1.11335 1.39498 0.75994 1.20113 0.93815 0.88767 1.01554 1.21321 0.94141 0.98661 0.91926 1.22961 1.01226 0.96773 0.96493 1.22815 0.99155 0.99421 0.96340 1.23000 0.97836 0.99056 0.97521 0.93750 0.94220 0.90527 0.92250 0.83989 0.82265 0.85185 0.91148 0.90933 0.89817 0.91721 0.90941 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.48 7.63 59.85 0.46 2.93 16 2 N -0.44 -11.92 3.02 -123.49 -0.37 -12.30 16 3 C -0.32 -9.20 9.38 -14.98 -0.14 -9.34 16 4 H 0.11 3.24 7.38 -52.49 -0.39 2.86 16 5 C 0.04 1.07 4.85 -17.46 -0.08 0.98 16 6 N -0.85 -23.03 10.80 55.50 0.60 -22.43 16 7 Si 0.90 20.95 29.67 -169.99 -5.04 15.91 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 C 0.51 13.44 7.43 -12.63 -0.09 13.35 16 12 O -0.60 -17.55 15.07 5.23 0.08 -17.47 16 13 C -0.18 -3.88 5.37 -102.99 -0.55 -4.43 16 14 C -0.17 -3.10 8.84 -37.50 -0.33 -3.43 16 15 C -0.03 -0.48 11.87 -16.85 -0.20 -0.68 16 16 N -0.56 -7.72 5.72 -8.87 -0.05 -7.77 16 17 H 0.40 4.12 8.22 -40.82 -0.34 3.78 16 18 C 0.07 1.30 6.26 -81.48 -0.51 0.79 16 19 C -0.04 -0.67 4.03 -90.96 -0.37 -1.04 16 20 C -0.14 -1.70 7.62 -25.92 -0.20 -1.90 16 21 C -0.14 -1.54 8.08 -25.91 -0.21 -1.75 16 22 C -0.14 -1.78 7.63 -25.91 -0.20 -1.98 16 23 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 24 H 0.04 0.85 5.78 -51.93 -0.30 0.55 16 25 H 0.08 1.93 6.10 -51.93 -0.32 1.62 16 26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.14 2.57 6.84 -52.49 -0.36 2.21 16 28 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.13 2.57 6.53 -51.93 -0.34 2.23 16 30 H 0.07 0.75 7.22 -51.93 -0.37 0.38 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.88 8.09 -51.93 -0.42 0.45 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -32.67 287.19 -7.36 -40.04 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.47 Total: 6.19 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.43 Total: -6.49 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.18 Total: -42.50 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.08 Total: -17.47 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.04 Total: 15.91 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.67 -7.36 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336572646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.802 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds