Wall clock time and date at job start Mon Mar 30 2020 04:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36972 * 120.00169 * 2 1 4 4 H 1.07999 * 120.00325 * 184.41860 * 3 2 1 5 5 C 1.38982 * 119.99610 * 4.42075 * 3 2 1 6 6 N 1.31411 * 119.99859 * 325.29859 * 5 3 2 7 7 Si 1.86794 * 119.99685 * 145.30100 * 5 3 2 8 8 H 1.48504 * 109.47558 * 94.99918 * 7 5 3 9 9 H 1.48507 * 109.46917 * 214.99671 * 7 5 3 10 10 H 1.48499 * 109.47305 * 334.99691 * 7 5 3 11 11 C 1.34778 * 119.99703 * 180.02562 * 2 1 3 12 12 O 1.21654 * 119.99584 * 185.72111 * 11 2 1 13 13 C 1.47182 * 120.00255 * 5.71893 * 11 2 1 14 14 C 1.46709 * 127.02151 * 34.89847 * 13 11 2 15 15 C 1.34451 * 106.39036 * 179.89045 * 14 13 11 16 16 N 1.36415 * 109.08559 * 0.38043 * 15 14 13 17 17 H 0.96999 * 124.82213 * 179.77923 * 16 15 14 18 18 C 1.34705 * 110.36383 * 359.74383 * 16 15 14 19 19 C 1.50698 * 125.90053 * 180.02562 * 18 16 15 20 20 C 1.53784 * 113.61277 * 37.48354 * 19 18 16 21 21 C 1.53783 * 87.08250 * 220.01409 * 20 19 18 22 22 C 1.53781 * 113.61837 * 299.98451 * 19 18 16 23 23 H 1.08996 * 109.47138 * 84.90323 * 1 2 3 24 24 H 1.09004 * 109.46755 * 204.90375 * 1 2 3 25 25 H 1.09000 * 109.46670 * 324.90093 * 1 2 3 26 26 H 0.97008 * 119.99739 * 180.02562 * 6 5 3 27 27 H 1.08001 * 126.80034 * 0.02562 * 14 13 11 28 28 H 1.08003 * 125.45065 * 180.12498 * 15 14 13 29 29 H 1.09000 * 112.85237 * 168.77894 * 19 18 16 30 30 H 1.08999 * 113.61711 * 334.55930 * 20 19 18 31 31 H 1.09004 * 113.61961 * 105.46879 * 20 19 18 32 32 H 1.08997 * 113.61479 * 270.88257 * 21 20 19 33 33 H 1.08999 * 113.61440 * 139.97734 * 21 20 19 34 34 H 1.09000 * 113.61194 * 254.52634 * 22 19 18 35 35 H 1.09000 * 113.61287 * 25.34929 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1500 1.1862 0.0000 4 1 3.2276 1.1876 -0.0721 5 6 1.4581 2.3880 0.0928 6 7 0.2787 2.5126 -0.4733 7 14 2.2048 3.8261 1.0220 8 1 2.9145 4.7167 0.0689 9 1 1.1275 4.5882 1.7032 10 1 3.1660 3.3168 2.0330 11 6 2.1389 -1.1672 -0.0005 12 8 3.3509 -1.1699 0.1045 13 6 1.4085 -2.4387 -0.1281 14 6 0.1980 -2.6865 -0.9191 15 6 -0.1128 -3.9824 -0.7412 16 7 0.8003 -4.5487 0.0993 17 1 0.7901 -5.4757 0.3847 18 6 1.7187 -3.6381 0.4760 19 6 2.8841 -3.8878 1.3983 20 6 3.5323 -5.2698 1.2116 21 6 3.6609 -5.3292 2.7429 22 6 2.4690 -4.3592 2.8019 23 1 -0.3633 0.0913 -1.0236 24 1 -0.3633 -0.9322 0.4328 25 1 -0.3633 0.8408 0.5909 26 1 -0.2040 3.3515 -0.4088 27 1 -0.3361 -1.9703 -1.5260 28 1 -0.9533 -4.4921 -1.1885 29 1 3.6001 -3.0660 1.4076 30 1 2.8545 -6.0182 0.8010 31 1 4.4910 -5.2361 0.6939 32 1 4.5903 -4.9023 3.1198 33 1 3.4450 -6.3122 3.1613 34 1 2.5692 -3.5904 3.5681 35 1 1.4998 -4.8574 2.8263 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336572646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:17 Heat of formation + Delta-G solvation = 21.345783 kcal Electronic energy + Delta-G solvation = -18208.162059 eV Core-core repulsion = 15400.263240 eV Total energy + Delta-G solvation = -2807.898819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17669 -39.78721 -39.03415 -36.58699 -33.76610 -31.74836 -30.51624 -28.20621 -26.84312 -26.52879 -25.61114 -23.08716 -21.73401 -20.32013 -19.62133 -18.94557 -18.55724 -17.18637 -16.42420 -16.15217 -15.96264 -15.82962 -15.25695 -15.00470 -14.33075 -14.09720 -13.82188 -13.48718 -13.40019 -13.23375 -13.15932 -13.07615 -12.93378 -12.51481 -12.28446 -12.10729 -11.61626 -11.36139 -11.18593 -10.77361 -10.33869 -9.82384 -9.51808 -8.91654 -8.49419 -5.76064 1.01367 1.36429 1.40227 1.55272 1.71362 2.26857 2.43408 2.48782 3.07068 3.35425 3.65403 3.77058 3.80802 4.05536 4.28796 4.32375 4.45604 4.68886 4.72542 4.74508 4.79192 4.87937 5.05204 5.06176 5.07881 5.09947 5.20647 5.31553 5.37690 5.48697 5.56391 5.93502 6.04677 6.21486 6.53395 6.84525 7.21253 7.54800 8.17547 8.57033 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.028233 B = 0.006672 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.506966 B = 4195.910678 C = 4870.374027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.454 5.454 3 C -0.367 4.367 4 H 0.072 0.928 5 C 0.013 3.987 6 N -0.865 5.865 7 Si 0.971 3.029 8 H -0.270 1.270 9 H -0.261 1.261 10 H -0.279 1.279 11 C 0.496 3.504 12 O -0.647 6.647 13 C -0.240 4.240 14 C -0.201 4.201 15 C 0.008 3.992 16 N -0.531 5.531 17 H 0.430 0.570 18 C 0.089 3.911 19 C -0.067 4.067 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.130 4.130 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.278 0.722 27 H 0.135 0.865 28 H 0.215 0.785 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -16.593 4.482 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.171 5.171 3 C -0.494 4.494 4 H 0.090 0.910 5 C -0.192 4.192 6 N -0.501 5.501 7 Si 0.794 3.206 8 H -0.195 1.195 9 H -0.185 1.185 10 H -0.204 1.204 11 C 0.288 3.712 12 O -0.537 6.537 13 C -0.250 4.250 14 C -0.226 4.226 15 C -0.120 4.120 16 N -0.128 5.128 17 H 0.270 0.730 18 C -0.029 4.029 19 C -0.087 4.087 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.167 4.167 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.231 0.769 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.693 -16.539 4.508 17.536 hybrid contribution 0.392 1.164 0.002 1.229 sum -3.301 -15.375 4.511 16.359 Atomic orbital electron populations 1.21674 0.79539 1.00208 1.00673 1.43725 1.06686 1.04668 1.62009 1.19464 0.92423 0.83954 1.53565 0.90970 1.25882 0.96516 1.00617 0.96179 1.70298 1.16224 1.27954 1.35667 0.85318 0.78633 0.77506 0.79189 1.19534 1.18545 1.20407 1.17843 0.86434 0.83848 0.83104 1.90479 1.16006 1.88022 1.59219 1.20602 1.01746 0.93231 1.09420 1.22202 0.97660 0.97447 1.05276 1.22138 0.97692 0.93281 0.98928 1.41238 1.21504 1.11915 1.38192 0.72975 1.20188 0.94123 0.88265 1.00331 1.21356 0.93547 0.99416 0.94339 1.22978 1.01060 0.94387 0.97857 1.22756 0.97954 1.00347 0.95150 1.23020 0.99928 0.99231 0.94563 0.94420 0.91784 0.92083 0.91204 0.84704 0.76887 0.90174 0.88265 0.91661 0.90269 0.88386 0.92385 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.09 7.63 127.77 0.97 7.06 16 2 N -0.45 -26.39 3.02 -662.86 -2.00 -28.39 16 3 C -0.37 -22.79 9.38 84.07 0.79 -22.00 16 4 H 0.07 4.83 7.38 -2.91 -0.02 4.81 16 5 C 0.01 0.71 4.85 84.93 0.41 1.13 16 6 N -0.86 -47.45 10.80 21.67 0.23 -47.22 16 7 Si 0.97 44.08 29.67 68.60 2.04 46.11 16 8 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 9 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 C 0.50 28.19 7.43 86.59 0.64 28.83 16 12 O -0.65 -41.03 15.07 -4.20 -0.06 -41.10 16 13 C -0.24 -10.68 5.37 -18.81 -0.10 -10.78 16 14 C -0.20 -7.22 8.84 23.62 0.21 -7.01 16 15 C 0.01 0.19 11.87 83.11 0.99 1.18 16 16 N -0.53 -12.63 5.72 -181.97 -1.04 -13.68 16 17 H 0.43 6.25 8.22 -92.71 -0.76 5.49 16 18 C 0.09 3.10 6.26 42.02 0.26 3.36 16 19 C -0.07 -2.18 4.03 -11.01 -0.04 -2.22 16 20 C -0.13 -2.83 7.62 31.12 0.24 -2.59 16 21 C -0.12 -2.40 8.08 31.12 0.25 -2.15 16 22 C -0.13 -3.17 7.63 31.12 0.24 -2.93 16 23 H 0.04 1.87 7.51 -2.39 -0.02 1.86 16 24 H 0.06 2.81 5.78 -2.38 -0.01 2.80 16 25 H 0.06 3.17 6.10 -2.39 -0.01 3.16 16 26 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 27 H 0.14 4.91 6.84 -2.91 -0.02 4.89 16 28 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.08 3.44 6.53 -2.39 -0.02 3.42 16 30 H 0.10 1.66 7.22 -2.39 -0.02 1.64 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.91 8.09 -2.39 -0.02 1.90 16 Total: -1.00 -78.42 287.19 4.37 -74.06 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.35 Total: 18.33 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.86 Total: -8.12 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.81 Total: -89.28 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.06 Total: -41.10 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.04 Total: 46.11 kcal Total: -78.42 4.37 -74.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336572646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.403 kcal (2) G-P(sol) polarization free energy of solvation -78.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds