Wall clock time and date at job start Mon Mar 30 2020 04:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34290 * 125.24706 * 2 1 4 4 C 1.46741 * 107.47432 * 180.25325 * 3 2 1 5 5 N 1.30897 * 126.85142 * 179.73875 * 4 3 2 6 6 C 1.46507 * 119.99673 * 0.02562 * 5 4 3 7 7 H 1.08996 * 109.47101 * 0.02562 * 6 5 4 8 8 C 1.52993 * 109.47149 * 240.00257 * 6 5 4 9 9 C 1.53003 * 109.46930 * 120.00420 * 6 5 4 10 10 C 1.47200 * 109.46877 * 295.00080 * 9 6 5 11 11 N 4.95539 * 120.48577 * 51.94267 * 2 1 3 12 12 N 1.38424 * 106.30371 * 359.75693 * 4 3 2 13 13 H 0.96999 * 126.32898 * 179.97438 * 12 4 3 14 14 N 1.36884 * 125.24678 * 179.83092 * 2 1 3 15 15 C 1.46507 * 125.31003 * 0.02562 * 14 2 1 16 16 C 1.50697 * 109.47006 * 84.71746 * 15 14 2 17 17 H 1.07991 * 120.00449 * 359.72165 * 16 15 14 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00035 * 179.72339 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 359.72191 * 18 16 15 21 21 H 1.48500 * 109.46986 * 90.00256 * 20 18 16 22 22 H 1.48496 * 109.47029 * 210.00273 * 20 18 16 23 23 H 1.48499 * 109.47352 * 330.00102 * 20 18 16 24 24 H 1.08996 * 109.47539 * 270.17126 * 1 2 3 25 25 H 1.09004 * 109.47272 * 30.16726 * 1 2 3 26 26 H 1.09002 * 109.47323 * 150.16792 * 1 2 3 27 27 H 1.08009 * 126.26160 * 0.03084 * 3 2 1 28 28 H 1.09006 * 109.47407 * 300.00222 * 8 6 5 29 29 H 1.09000 * 109.47077 * 60.00149 * 8 6 5 30 30 H 1.09000 * 109.47254 * 180.02562 * 8 6 5 31 31 H 1.08995 * 109.47300 * 54.99857 * 9 6 5 32 32 H 1.08996 * 109.47152 * 174.99831 * 9 6 5 33 33 H 1.08998 * 109.47049 * 324.71175 * 15 14 2 34 34 H 1.09001 * 109.46896 * 204.71446 * 15 14 2 35 35 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2820 1.0967 0.0000 4 6 3.6793 0.6488 -0.0062 5 7 4.7466 1.4066 -0.0129 6 6 4.6092 2.8652 -0.0142 7 1 3.5521 3.1306 -0.0086 8 6 5.2728 3.4388 -1.2678 9 6 5.2862 3.4424 1.2306 10 6 4.5722 2.9850 2.4339 11 7 4.0210 2.6324 3.3624 12 7 3.6439 -0.7350 -0.0040 13 1 4.4103 -1.3295 -0.0072 14 7 2.2969 -1.1179 0.0033 15 6 1.8093 -2.4994 0.0068 16 6 1.5192 -2.9333 -1.4069 17 1 1.6776 -2.2472 -2.2256 18 6 1.0467 -4.2048 -1.6545 19 7 0.7884 -4.5817 -2.8877 20 14 0.7734 -5.3919 -0.2383 21 1 -0.6136 -5.2440 0.2709 22 1 0.9810 -6.7839 -0.7122 23 1 1.7357 -5.0916 0.8521 24 1 -0.3634 0.0031 1.0276 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3634 -0.8915 -0.5112 27 1 1.9394 2.1210 0.0005 28 1 6.3301 3.1734 -1.2731 29 1 4.7906 3.0276 -2.1546 30 1 5.1710 4.5240 -1.2686 31 1 6.3213 3.1033 1.2715 32 1 5.2620 4.5311 1.1856 33 1 0.8971 -2.5612 0.6003 34 1 2.5685 -3.1516 0.4385 35 1 0.4563 -5.4763 -3.0619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381644753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:07 Heat of formation + Delta-G solvation = 112.528051 kcal Electronic energy + Delta-G solvation = -17504.900352 eV Core-core repulsion = 14733.248244 eV Total energy + Delta-G solvation = -2771.652108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12411 -37.13214 -35.35446 -33.67772 -32.64584 -31.76064 -29.87642 -27.90849 -27.27284 -26.37038 -22.41730 -21.84120 -19.41929 -19.21085 -17.32842 -17.25294 -17.13329 -15.36551 -14.81957 -14.51228 -14.27044 -13.70516 -13.59536 -13.15132 -13.11639 -12.75215 -12.69238 -12.52895 -12.25632 -12.13715 -11.95108 -11.74675 -11.54655 -11.35687 -11.14584 -10.90384 -10.79153 -10.48861 -9.89778 -9.26084 -8.93621 -8.67126 -8.37700 -6.41878 -6.32950 -4.46552 2.31447 2.45984 3.03503 3.04002 3.06681 3.10477 3.14515 3.64458 4.07678 4.28615 4.42093 4.87995 5.09688 5.12738 5.29782 5.49797 5.58807 5.68210 5.74698 5.82172 5.86997 5.90832 6.16423 6.18312 6.23848 6.29938 6.42707 6.47143 6.50449 6.76370 7.11521 7.47649 7.84933 8.01580 8.03420 8.31878 8.64917 8.95594 9.14415 10.70942 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.005198 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.742661 B = 5385.771179 C = 5597.778153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.202 3.798 3 C -0.374 4.374 4 C 0.446 3.554 5 N -0.665 5.665 6 C 0.115 3.885 7 H 0.048 0.952 8 C -0.136 4.136 9 C -0.020 4.020 10 C 0.216 3.784 11 N -0.451 5.451 12 N -0.503 5.503 13 H 0.439 0.561 14 N -0.368 5.368 15 C 0.234 3.766 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.081 3.919 19 N -0.882 5.882 20 Si 0.871 3.129 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 11.854 4.837 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.081 3.919 3 C -0.410 4.410 4 C 0.178 3.822 5 N -0.405 5.405 6 C 0.001 3.999 7 H 0.066 0.934 8 C -0.194 4.194 9 C -0.061 4.061 10 C -0.101 4.101 11 N -0.128 5.128 12 N -0.233 5.233 13 H 0.285 0.715 14 N -0.156 5.156 15 C 0.115 3.885 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.124 4.124 19 N -0.518 5.518 20 Si 0.697 3.303 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.538 10.669 6.111 12.794 hybrid contribution -0.318 -0.698 0.108 0.775 sum 3.220 9.971 6.219 12.184 Atomic orbital electron populations 1.20639 0.87482 1.04885 1.03056 1.20527 0.93478 0.85609 0.92264 1.21859 0.91848 0.97846 1.29401 1.20270 0.90486 0.83000 0.88409 1.72192 1.24474 1.02437 1.41402 1.20936 0.97642 0.89338 0.91950 0.93380 1.21776 1.01463 0.99016 0.97163 1.19544 0.99548 1.00635 0.86412 1.29234 0.93629 0.92971 0.94273 1.81143 1.09799 1.09279 1.12629 1.43920 0.97317 1.04274 1.77784 0.71516 1.46770 0.92943 1.06355 1.69559 1.20032 0.95128 0.73990 0.99367 1.21329 1.46577 1.00081 0.91262 0.89862 1.24833 0.94257 0.97567 0.95724 1.69869 1.43055 1.19801 1.19051 0.86931 0.79506 0.81256 0.82579 1.19469 1.20440 1.19002 0.90441 0.89811 0.89102 0.83912 0.92103 0.92578 0.92800 0.87368 0.87883 0.93281 0.94034 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.87 36.00 0.36 -1.15 16 2 C 0.20 3.68 6.89 -81.73 -0.56 3.12 16 3 C -0.37 -6.67 9.95 -37.54 -0.37 -7.04 16 4 C 0.45 8.35 8.29 -153.75 -1.28 7.07 16 5 N -0.67 -11.41 9.95 -52.13 -0.52 -11.93 16 6 C 0.12 1.52 2.89 -67.93 -0.20 1.33 16 7 H 0.05 0.66 5.99 -51.93 -0.31 0.35 16 8 C -0.14 -1.51 9.52 37.15 0.35 -1.15 16 9 C -0.02 -0.22 5.39 -29.52 -0.16 -0.38 16 10 C 0.22 3.16 15.14 -20.76 -0.31 2.85 16 11 N -0.45 -7.92 18.54 42.15 0.78 -7.14 16 12 N -0.50 -9.68 7.40 32.39 0.24 -9.44 16 13 H 0.44 7.71 8.96 -182.65 -1.64 6.07 16 14 N -0.37 -7.38 3.63 -58.09 -0.21 -7.59 16 15 C 0.23 4.98 4.70 -5.19 -0.02 4.95 16 16 C -0.55 -14.11 9.94 -34.44 -0.34 -14.45 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.88 -24.78 13.96 55.43 0.77 -24.00 16 20 Si 0.87 18.91 27.47 -169.99 -4.67 14.24 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.49 6.54 56.52 0.37 -5.12 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.48 7.73 -51.93 -0.40 1.07 16 27 H 0.14 2.25 6.91 -52.48 -0.36 1.89 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.98 7.25 -51.93 -0.38 0.61 16 34 H 0.04 0.88 7.19 -51.93 -0.37 0.50 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -30.71 307.15 -7.62 -38.34 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.01 Total: 5.74 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.64 Total: -2.84 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 1.07 Total: -60.10 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.67 Total: 14.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.71 -7.62 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381644753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.863 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds