Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47318 * 2 1 4 4 C 1.50703 * 109.47350 * 120.00643 * 2 1 3 5 5 H 1.08000 * 120.00160 * 119.99662 * 4 2 1 6 6 C 1.37877 * 119.99744 * 299.99747 * 4 2 1 7 7 N 1.31513 * 120.00136 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00110 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46793 * 90.00375 * 8 6 4 10 10 H 1.48502 * 109.47187 * 210.00007 * 8 6 4 11 11 H 1.48494 * 109.47194 * 330.00573 * 8 6 4 12 12 C 1.50703 * 109.46852 * 240.00222 * 2 1 3 13 13 O 1.21281 * 120.00177 * 239.99491 * 12 2 1 14 14 N 1.34776 * 119.99767 * 59.99999 * 12 2 1 15 15 C 1.46502 * 119.99935 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47117 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47165 * 180.02562 * 16 15 14 18 18 C 1.38223 * 119.62264 * 125.02051 * 17 16 15 19 19 C 1.38628 * 119.16031 * 179.97438 * 18 17 16 20 20 C 1.38672 * 118.42475 * 359.97438 * 19 18 17 21 21 C 1.38186 * 119.15778 * 0.02562 * 20 19 18 22 22 N 1.31856 * 119.61279 * 304.99522 * 17 16 15 23 23 H 1.08992 * 109.47423 * 59.99352 * 1 2 3 24 24 H 1.09006 * 109.47199 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46449 * 299.99167 * 1 2 3 26 26 H 0.96993 * 120.00094 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00145 * 359.97438 * 14 12 2 28 28 H 1.09001 * 109.47193 * 60.00100 * 15 14 12 29 29 H 1.08999 * 109.47459 * 300.00027 * 15 14 12 30 30 H 1.08998 * 109.47414 * 60.00347 * 16 15 14 31 31 H 1.09005 * 109.47187 * 299.99620 * 16 15 14 32 32 H 1.07995 * 120.41821 * 359.95030 * 18 17 16 33 33 H 1.08006 * 120.78822 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.42192 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.60956 * 180.27218 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 2.1381 -0.8593 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6995 10 1 0.9774 1.9951 3.9072 11 1 0.8492 2.1771 1.4925 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1194 14 7 1.7066 -0.2498 -2.4546 15 6 2.1953 -0.9401 -3.6508 16 6 1.6857 -0.2184 -4.9000 17 6 2.1879 -0.9288 -6.1305 18 6 1.2871 -1.3588 -7.0867 19 6 1.7596 -2.0108 -8.2151 20 6 3.1267 -2.2063 -8.3406 21 6 3.9666 -1.7484 -7.3434 22 7 3.4817 -1.1325 -6.2829 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3632 0.5137 0.8901 26 1 1.9035 -0.5282 4.4374 27 1 1.1486 0.5386 -2.5435 28 1 1.8324 -1.9679 -3.6511 29 1 3.2853 -0.9397 -3.6508 30 1 2.0490 0.8092 -4.8996 31 1 0.5956 -0.2185 -4.9004 32 1 0.2285 -1.1894 -6.9560 33 1 1.0791 -2.3575 -8.9789 34 1 3.5298 -2.7107 -9.2063 35 1 5.0329 -1.8929 -7.4358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596631638.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -6.424557 kcal Electronic energy + Delta-G solvation = -17111.128796 eV Core-core repulsion = 14302.025765 eV Total energy + Delta-G solvation = -2809.103031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43108 -38.84857 -35.22643 -33.75992 -32.79836 -32.40311 -31.14744 -28.80164 -25.08885 -24.55466 -23.69462 -22.36487 -21.40915 -19.36438 -17.07291 -16.68768 -16.51602 -16.01325 -15.77800 -15.12500 -14.90970 -14.52564 -14.03758 -13.60699 -13.46577 -13.17499 -12.91865 -12.58812 -12.26244 -11.90095 -11.84187 -11.58898 -11.32943 -10.89174 -10.55318 -10.25380 -10.11259 -9.62059 -9.59515 -9.20574 -9.04945 -8.63288 -8.54149 -8.45008 -6.00573 -4.00485 0.86128 1.04633 3.26289 3.33919 3.39478 3.53209 3.67375 3.78857 4.14036 4.41738 4.53495 4.61786 4.80302 4.86554 5.09662 5.15330 5.27056 5.29059 5.46155 5.59646 5.81491 5.83518 5.91782 6.10397 6.15219 6.21862 6.38293 6.45650 6.50433 6.77182 7.03169 7.21379 7.59960 7.80096 8.19661 8.61121 9.15916 9.22423 9.58638 11.12581 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.054198 B = 0.003936 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.497266 B = 7112.367527 C = 7405.761746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 H 0.052 0.948 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.527 3.473 13 O -0.531 6.531 14 N -0.749 5.749 15 C 0.130 3.870 16 C -0.082 4.082 17 C 0.138 3.862 18 C -0.170 4.170 19 C -0.075 4.075 20 C -0.182 4.182 21 C 0.104 3.896 22 N -0.477 5.477 23 H 0.033 0.967 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.394 0.606 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 2.395 -24.257 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.543 4.543 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.192 1.192 12 C 0.315 3.685 13 O -0.405 6.405 14 N -0.404 5.404 15 C 0.005 3.995 16 C -0.120 4.120 17 C 0.000 4.000 18 C -0.190 4.190 19 C -0.101 4.101 20 C -0.202 4.202 21 C -0.053 4.053 22 N -0.187 5.187 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.227 0.773 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.657 1.936 -23.306 23.537 hybrid contribution -1.492 0.822 -0.627 1.816 sum -4.149 2.758 -23.934 24.447 Atomic orbital electron populations 1.22109 0.97384 1.01463 0.99166 1.19313 0.93161 0.97564 0.92660 0.93017 1.20967 1.31971 1.14075 0.87276 0.88895 1.24991 0.95885 0.96589 0.95757 1.69884 1.45559 1.40263 0.97843 0.86898 0.80650 0.83852 0.77037 1.20567 1.22365 1.19234 1.21248 0.78966 0.84337 0.83919 1.90587 1.37079 1.26321 1.86501 1.46236 1.55689 1.32733 1.05757 1.21060 1.00119 0.95671 0.82607 1.20760 1.00907 0.99724 0.90601 1.21112 0.89009 0.94776 0.95129 1.22007 1.01165 1.00550 0.95228 1.21586 0.95746 0.95630 0.97113 1.22148 0.94492 1.02466 1.01058 1.22805 1.00564 0.93067 0.88888 1.67516 1.15080 1.13323 1.22737 0.94830 0.92406 0.93350 0.92612 0.77269 0.92316 0.90804 0.89224 0.89691 0.84689 0.84876 0.84869 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.57 37.16 0.32 -2.65 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.33 16 3 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 4 C -0.50 -14.92 8.96 -34.44 -0.31 -15.23 16 5 H 0.09 3.14 7.00 -52.49 -0.37 2.77 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 8 Si 0.89 21.56 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.30 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 12 C 0.53 11.92 7.15 -10.98 -0.08 11.84 16 13 O -0.53 -14.34 15.46 5.56 0.09 -14.26 16 14 N -0.75 -12.50 5.45 -60.29 -0.33 -12.83 16 15 C 0.13 1.96 5.53 -4.04 -0.02 1.94 16 16 C -0.08 -0.88 5.73 -27.88 -0.16 -1.04 16 17 C 0.14 1.56 6.18 -82.59 -0.51 1.05 16 18 C -0.17 -1.53 9.71 -39.44 -0.38 -1.91 16 19 C -0.07 -0.58 10.18 -39.28 -0.40 -0.98 16 20 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 21 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 22 N -0.48 -6.03 9.88 -9.47 -0.09 -6.12 16 23 H 0.03 0.54 7.56 -51.93 -0.39 0.14 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.39 5.25 7.89 -40.82 -0.32 4.93 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 32 H 0.14 0.91 7.95 -52.49 -0.42 0.49 16 33 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -35.93 294.19 -6.30 -42.23 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.58 Total: 2.92 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.44 Total: -6.39 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.35 Total: -46.35 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.93 -6.30 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596631638.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.805 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds