Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48506 * 109.46831 * 239.99716 * 3 2 1 5 5 H 1.48493 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46856 * 120.00134 * 3 2 1 7 7 C 1.38808 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99702 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00536 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00589 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47125 * 179.97438 * 11 10 9 13 13 C 1.38255 * 119.94670 * 89.99827 * 12 11 10 14 14 C 1.38196 * 120.11173 * 180.31458 * 13 12 11 15 15 C 1.38702 * 120.06979 * 359.51950 * 14 13 12 16 16 C 1.38976 * 119.81854 * 0.36316 * 15 14 13 17 17 C 1.38201 * 119.94410 * 269.97635 * 12 11 10 18 18 O 1.36106 * 120.78195 * 180.02562 * 16 15 14 19 19 C 1.43170 * 116.71819 * 342.81004 * 18 16 15 20 20 C 1.53473 * 108.24794 * 46.16489 * 19 18 16 21 21 O 1.36101 * 119.39791 * 180.02562 * 15 14 13 22 22 H 0.97004 * 119.99424 * 0.02562 * 1 2 3 23 23 H 0.97007 * 119.99903 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47389 * 59.99751 * 10 9 7 25 25 H 1.09005 * 109.46295 * 300.00126 * 10 9 7 26 26 H 1.08997 * 109.47396 * 59.99307 * 11 10 9 27 27 H 1.09005 * 109.47110 * 299.99178 * 11 10 9 28 28 H 1.08002 * 119.93919 * 0.02892 * 13 12 11 29 29 H 1.07998 * 119.96440 * 179.75357 * 14 13 12 30 30 H 1.08008 * 119.96288 * 359.96279 * 17 12 11 31 31 H 1.09002 * 109.70738 * 165.84852 * 19 18 16 32 32 H 1.08992 * 109.70951 * 286.47831 * 19 18 16 33 33 H 1.08997 * 109.71202 * 59.95098 * 20 19 18 34 34 H 1.09000 * 109.70748 * 180.57584 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.0637 -4.8197 0.0031 12 6 1.8172 -6.1248 0.0037 13 6 2.1622 -6.7220 1.2019 14 6 2.8588 -7.9156 1.2063 15 6 3.2050 -8.5227 0.0083 16 6 2.8561 -7.9236 -1.1962 17 6 2.1617 -6.7229 -1.1936 18 8 3.1855 -8.5023 -2.3832 19 6 4.2019 -9.5100 -2.3479 20 6 3.8955 -10.4611 -1.1830 21 8 3.8906 -9.6982 0.0286 22 1 -0.4849 0.8401 -0.0004 23 1 0.3555 -2.3880 0.0016 24 1 2.6846 -3.7138 0.8927 25 1 2.6846 -3.7153 -0.8873 26 1 0.4373 -4.7625 -0.8870 27 1 0.4368 -4.7614 0.8929 28 1 1.8908 -6.2526 2.1359 29 1 3.1306 -8.3780 2.1437 30 1 1.8901 -6.2547 -2.1283 31 1 4.2015 -10.0655 -3.2858 32 1 5.1757 -9.0446 -2.1960 33 1 2.9189 -10.9217 -1.3316 34 1 4.6624 -11.2337 -1.1279 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020048383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -41.757350 kcal Electronic energy + Delta-G solvation = -17342.823296 eV Core-core repulsion = 14434.469458 eV Total energy + Delta-G solvation = -2908.353838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27450 -38.17517 -37.30981 -34.99389 -32.59431 -31.04926 -30.56896 -29.17360 -27.06247 -24.82944 -23.60675 -22.56420 -21.41783 -20.26696 -18.62452 -17.36858 -17.26642 -16.85014 -15.48833 -15.17956 -14.74237 -14.51312 -14.47310 -14.21414 -13.84160 -13.49457 -13.24806 -13.12537 -12.84033 -11.89312 -11.63823 -11.45937 -11.24528 -10.91782 -10.88003 -10.62309 -10.54989 -10.47294 -10.04718 -9.66618 -8.82985 -8.53848 -7.94522 -6.88272 -5.72519 -3.01207 1.35402 1.36819 2.91847 3.11642 3.47539 3.51337 3.52796 3.76049 4.04795 4.56700 4.59734 4.63149 4.66706 4.97833 5.03636 5.20793 5.26949 5.42767 5.47773 5.58696 5.70549 5.96321 6.01532 6.10288 6.17703 6.30289 6.37106 6.64393 6.72806 6.82231 6.89340 6.99882 7.38515 7.73765 8.46643 9.57472 10.15390 10.50482 11.50472 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.046084 B = 0.003813 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.441221 B = 7340.841019 C = 7518.805646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.160 3.840 11 C -0.089 4.089 12 C -0.057 4.057 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.035 3.965 16 C 0.049 3.951 17 C -0.109 4.109 18 O -0.308 6.308 19 C 0.021 3.979 20 C 0.021 3.979 21 O -0.311 6.311 22 H 0.255 0.745 23 H 0.384 0.616 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -22.168 -1.891 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.032 3.968 11 C -0.126 4.126 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.130 4.130 15 C -0.009 4.009 16 C 0.005 3.995 17 C -0.128 4.128 18 O -0.223 6.223 19 C -0.055 4.055 20 C -0.054 4.054 21 O -0.226 6.226 22 H 0.065 0.935 23 H 0.217 0.783 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.626 -22.084 -1.926 23.137 hybrid contribution 0.336 0.696 -0.167 0.791 sum 6.962 -21.387 -2.093 22.589 Atomic orbital electron populations 1.69658 1.05108 1.25736 1.57867 1.24742 0.95541 0.97682 1.03087 0.86251 0.78504 0.83482 0.77866 1.21270 1.21677 1.21253 1.19201 0.91049 0.84171 1.42613 0.91225 1.42370 1.05908 1.00003 1.89598 1.20610 0.93175 0.84891 0.98114 1.20801 0.97963 0.90549 1.03300 1.19742 0.97929 0.96358 0.91809 1.20906 0.98878 0.94718 0.98386 1.20383 1.00320 0.96685 0.95635 1.18838 1.00517 0.87976 0.93619 1.18851 1.02165 0.94720 0.83782 1.20381 1.00826 0.92298 0.99293 1.86309 1.55283 1.52806 1.27909 1.23590 0.91330 0.89815 1.00779 1.23576 1.03896 0.93831 0.84137 1.86283 1.69744 1.31036 1.35496 0.93481 0.78258 0.96137 0.96220 0.90725 0.90550 0.84824 0.85033 0.84688 0.86317 0.90590 0.90704 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -19.20 5.60 -59.91 -0.34 -19.54 16 10 C 0.16 3.35 6.24 -4.04 -0.03 3.32 16 11 C -0.09 -1.49 5.46 -27.89 -0.15 -1.64 16 12 C -0.06 -0.87 5.13 -104.63 -0.54 -1.40 16 13 C -0.11 -1.51 9.69 -39.59 -0.38 -1.90 16 14 C -0.11 -1.46 9.96 -39.43 -0.39 -1.85 16 15 C 0.03 0.48 6.49 -39.14 -0.25 0.23 16 16 C 0.05 0.71 6.49 -39.14 -0.25 0.46 16 17 C -0.11 -1.63 9.61 -39.42 -0.38 -2.01 16 18 O -0.31 -4.01 10.42 -32.86 -0.34 -4.36 16 19 C 0.02 0.18 7.26 37.40 0.27 0.45 16 20 C 0.02 0.17 7.26 37.40 0.27 0.45 16 21 O -0.31 -3.79 10.42 -32.85 -0.34 -4.13 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 28 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.14 1.95 8.06 -52.48 -0.42 1.52 16 31 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -33.04 292.47 -7.50 -40.53 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.50 Total: 4.81 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.08 Total: -11.48 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.39 Total: -47.53 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.68 Total: -8.49 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.04 -7.50 -40.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020048383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.225 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds