Wall clock time and date at job start Mon Mar 30 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46801 * 2 1 4 4 C 1.35002 * 116.99865 * 180.02562 * 3 2 1 5 5 O 1.21730 * 120.00279 * 359.97438 * 4 3 2 6 6 C 1.41247 * 120.00257 * 180.02562 * 4 3 2 7 7 C 1.38815 * 125.95058 * 180.11864 * 6 4 3 8 8 N 1.38439 * 126.94773 * 0.03188 * 7 6 4 9 9 C 1.46643 * 106.09948 * 180.25045 * 7 6 4 10 10 C 1.43207 * 126.69856 * 179.79762 * 9 7 6 11 11 N 8.45442 * 134.24210 * 0.12122 * 2 1 3 12 12 C 1.38052 * 106.60239 * 359.78427 * 9 7 6 13 13 N 1.35414 * 109.05983 * 359.97438 * 12 9 7 14 14 C 1.36988 * 124.93685 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00228 * 204.44518 * 14 13 12 16 16 C 1.39087 * 119.99666 * 24.43658 * 14 13 12 17 17 N 1.31262 * 119.99970 * 9.70031 * 16 14 13 18 18 Si 1.86797 * 119.99702 * 189.69613 * 16 14 13 19 19 H 1.48496 * 109.47121 * 265.13254 * 18 16 14 20 20 H 1.48496 * 109.47238 * 25.13777 * 18 16 14 21 21 H 1.48505 * 109.46819 * 145.13618 * 18 16 14 22 22 H 1.09001 * 109.46738 * 299.99730 * 1 2 3 23 23 H 1.08991 * 109.47924 * 59.99892 * 1 2 3 24 24 H 1.09004 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46738 * 240.00270 * 2 1 3 26 26 H 1.08988 * 109.47427 * 120.00051 * 2 1 3 27 27 H 0.97000 * 119.99825 * 180.23776 * 8 7 6 28 28 H 0.96996 * 120.00086 * 0.24218 * 8 7 6 29 29 H 1.08003 * 125.46606 * 180.02562 * 12 9 7 30 30 H 0.96994 * 120.00312 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3446 1.5242 -0.0005 5 8 4.0862 0.5589 -0.0005 6 6 3.8845 2.8294 0.0000 7 6 5.2344 3.1530 -0.0028 8 7 6.3015 2.2710 -0.0072 9 6 5.3015 4.6179 0.0052 10 6 6.4877 5.4202 0.0097 11 7 7.4286 6.0567 0.0128 12 6 3.9980 5.0724 0.0072 13 7 3.1590 4.0095 0.0006 14 6 1.7915 4.0895 0.0009 15 1 1.2026 3.2686 0.3828 16 6 1.1614 5.2279 -0.4905 17 7 1.8580 6.1410 -1.1261 18 14 -0.6763 5.4573 -0.2461 19 1 -1.4003 4.9667 -1.4461 20 1 -1.1167 4.6895 0.9462 21 1 -0.9726 6.8984 -0.0441 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 7.2105 2.6096 -0.0054 28 1 6.1402 1.3146 -0.0122 29 1 3.6959 6.1093 0.0124 30 1 1.4186 6.9347 -1.4691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034620055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:46 Heat of formation + Delta-G solvation = -43.440489 kcal Electronic energy + Delta-G solvation = -17888.418577 eV Core-core repulsion = 14876.451409 eV Total energy + Delta-G solvation = -3011.967168 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07739 -40.58517 -37.63337 -37.22980 -35.96127 -34.46759 -32.60077 -31.53441 -29.71917 -26.84281 -24.95176 -23.27741 -23.10730 -20.93358 -20.29155 -18.77064 -17.92581 -17.48400 -17.32989 -16.77783 -16.25060 -15.91607 -15.59413 -15.20730 -14.62788 -14.42452 -14.09367 -13.98024 -13.66195 -13.47917 -13.37873 -12.89869 -12.86369 -12.66586 -12.50873 -12.24602 -12.05974 -11.85879 -11.41998 -11.29026 -10.88199 -9.21719 -8.65472 -8.40432 -6.32364 0.62451 1.13584 1.47562 1.55501 1.63336 1.86242 2.16234 2.17897 2.35165 2.80083 2.88137 3.05068 3.17598 3.73611 4.12613 4.20234 4.27731 4.44226 4.57810 4.79094 4.99017 5.01611 5.16303 5.23841 5.31233 5.53877 5.70765 5.81060 6.49485 6.63268 6.80567 6.93366 7.04800 7.18234 7.38369 8.35514 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.011157 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.893584 B = 2509.074831 C = 4308.007886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.548 3.452 5 O -0.567 6.567 6 C -0.211 4.211 7 C 0.266 3.734 8 N -0.830 5.830 9 C -0.260 4.260 10 C 0.329 3.671 11 N -0.513 5.513 12 C 0.094 3.906 13 N -0.210 5.210 14 C -0.346 4.346 15 H 0.132 0.868 16 C 0.011 3.989 17 N -0.858 5.858 18 Si 1.008 2.992 19 H -0.267 1.267 20 H -0.251 1.251 21 H -0.270 1.270 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.406 0.594 28 H 0.411 0.589 29 H 0.174 0.826 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 -7.209 1.801 9.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.403 3.597 5 O -0.463 6.463 6 C -0.319 4.319 7 C 0.149 3.851 8 N -0.373 5.373 9 C -0.276 4.276 10 C 0.020 3.980 11 N -0.194 5.194 12 C -0.065 4.065 13 N 0.133 4.867 14 C -0.474 4.474 15 H 0.150 0.850 16 C -0.198 4.198 17 N -0.488 5.488 18 Si 0.828 3.172 19 H -0.192 1.192 20 H -0.174 1.174 21 H -0.194 1.194 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.235 0.765 28 H 0.244 0.756 29 H 0.191 0.809 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.754 -6.494 1.686 8.223 hybrid contribution -0.512 -0.261 -0.225 0.617 sum -5.265 -6.755 1.461 8.688 Atomic orbital electron populations 1.21809 0.90733 1.04167 1.03353 1.22815 0.96996 0.80679 1.01844 1.86403 1.23403 1.32312 1.84608 1.18145 0.80732 0.87822 0.73008 1.90677 1.60379 1.41969 1.53273 1.17583 0.89743 0.85646 1.38960 1.17967 0.86174 0.87846 0.93160 1.41544 1.05116 1.08014 1.82580 1.15533 0.87715 0.88134 1.36217 1.24594 0.91380 0.91850 0.90224 1.81116 1.11509 1.09612 1.17168 1.22005 0.85913 0.93816 1.04726 1.39856 1.05791 1.02896 1.38152 1.20791 0.78771 1.05920 1.41947 0.85025 1.26592 1.06354 0.94398 0.92478 1.69860 1.40066 1.09791 1.29043 0.84693 0.74159 0.78556 0.79836 1.19161 1.17449 1.19449 0.91608 0.91914 0.87783 0.92167 0.91810 0.76503 0.75587 0.80932 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.05 1.52 6.10 71.98 0.44 1.95 16 3 O -0.35 -13.83 7.37 -59.21 -0.44 -14.27 16 4 C 0.55 23.72 7.70 68.56 0.53 24.24 16 5 O -0.57 -24.07 14.71 19.08 0.28 -23.79 16 6 C -0.21 -9.62 6.67 38.96 0.26 -9.36 16 7 C 0.27 11.21 7.48 40.43 0.30 11.51 16 8 N -0.83 -28.69 9.04 -47.09 -0.43 -29.11 16 9 C -0.26 -11.32 6.15 -19.88 -0.12 -11.44 16 10 C 0.33 13.89 15.87 88.33 1.40 15.30 16 11 N -0.51 -22.03 18.54 19.01 0.35 -21.68 16 12 C 0.09 4.35 9.89 84.10 0.83 5.18 16 13 N -0.21 -10.01 2.87 -340.35 -0.98 -10.99 16 14 C -0.35 -16.11 9.25 84.09 0.78 -15.33 16 15 H 0.13 5.94 5.92 -2.91 -0.02 5.92 16 16 C 0.01 0.48 5.35 84.98 0.45 0.94 16 17 N -0.86 -39.81 10.97 21.68 0.24 -39.57 16 18 Si 1.01 34.05 29.56 68.60 2.03 36.08 16 19 H -0.27 -8.85 7.11 99.48 0.71 -8.15 16 20 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 21 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 26 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 27 H 0.41 12.11 8.95 -92.71 -0.83 11.28 16 28 H 0.41 13.87 6.90 -92.71 -0.64 13.23 16 29 H 0.17 8.16 6.51 -2.91 -0.02 8.14 16 30 H 0.29 12.45 8.31 -92.71 -0.77 11.68 16 Total: -1.00 -54.62 276.39 6.42 -48.20 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.25 Total: 34.60 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 5.61 Total: 20.52 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -0.81 Total: -101.35 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.16 Total: -38.06 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.03 Total: 36.08 kcal Total: -54.62 6.42 -48.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034620055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.756 kcal (2) G-P(sol) polarization free energy of solvation -54.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds