Wall clock time and date at job start Mon Mar 30 2020 03:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47543 * 16.12680 * 3 2 1 5 5 C 1.37101 * 119.99351 * 264.23028 * 4 3 2 6 6 H 1.08001 * 119.99565 * 197.71693 * 5 4 3 7 7 C 1.38949 * 120.00334 * 17.72011 * 5 4 3 8 8 N 1.31414 * 119.99906 * 21.39793 * 7 5 4 9 9 Si 1.86796 * 119.99894 * 201.39689 * 7 5 4 10 10 H 1.48498 * 109.47230 * 89.99955 * 9 7 5 11 11 H 1.48501 * 109.47104 * 210.00182 * 9 7 5 12 12 H 1.48499 * 109.47234 * 329.99824 * 9 7 5 13 13 C 1.34775 * 120.00271 * 84.22661 * 4 3 2 14 14 O 1.21289 * 119.99689 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00065 * 0.02562 * 13 4 3 16 16 N 1.46498 * 109.47263 * 179.97438 * 15 13 4 17 17 C 1.35961 * 126.07185 * 124.99763 * 16 15 13 18 18 C 1.35705 * 107.55431 * 180.02562 * 17 16 15 19 19 N 1.40798 * 126.06852 * 180.02562 * 18 17 16 20 20 C 1.40218 * 107.86094 * 0.02562 * 18 17 16 21 21 N 1.30867 * 108.36674 * 359.71789 * 20 18 17 22 22 H 1.09007 * 109.47086 * 256.11920 * 3 2 1 23 23 H 1.09005 * 109.46950 * 136.12573 * 3 2 1 24 24 H 0.96997 * 119.99524 * 179.97438 * 8 7 5 25 25 H 1.08998 * 109.46866 * 300.00091 * 15 13 4 26 26 H 1.08996 * 109.47005 * 59.99355 * 15 13 4 27 27 H 1.08002 * 126.22347 * 359.96388 * 17 16 15 28 28 H 0.96995 * 119.99991 * 359.97438 * 19 18 17 29 29 H 0.97004 * 120.00022 * 180.02562 * 19 18 17 30 30 H 1.08005 * 125.81836 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0970 -1.3259 -0.3836 5 6 3.4384 -2.2364 0.5828 6 1 4.0552 -3.0863 0.3303 7 6 2.9910 -2.0659 1.8872 8 7 1.9372 -1.3185 2.1280 9 14 3.8873 -2.8990 3.2985 10 1 4.9516 -1.9983 3.8095 11 1 2.9247 -3.1966 4.3894 12 1 4.4981 -4.1647 2.8186 13 6 3.2111 -1.6513 -1.6865 14 8 3.6164 -2.7495 -2.0040 15 6 2.8363 -0.6503 -2.7488 16 7 3.0488 -1.2404 -4.0727 17 6 2.1220 -1.3414 -5.0623 18 6 2.7175 -1.9471 -6.1206 19 7 2.1098 -2.2446 -7.3553 20 6 4.0456 -2.2242 -5.7661 21 7 4.2443 -1.7968 -4.5453 22 1 2.9712 0.2474 0.9977 23 1 2.9709 0.7417 -0.7123 24 1 1.6247 -1.1998 3.0385 25 1 1.7870 -0.3772 -2.6365 26 1 3.4565 0.2398 -2.6443 27 1 1.0977 -1.0021 -5.0145 28 1 1.1802 -2.0128 -7.5066 29 1 2.6206 -2.6820 -8.0544 30 1 4.7806 -2.7044 -6.3951 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035320954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:13 Heat of formation + Delta-G solvation = 98.680052 kcal Electronic energy + Delta-G solvation = -17623.331594 eV Core-core repulsion = 14649.819986 eV Total energy + Delta-G solvation = -2973.511608 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67105 -38.77472 -35.88044 -34.52122 -34.09364 -32.32537 -31.67929 -28.70168 -27.54774 -26.49211 -24.43614 -21.29578 -20.43835 -19.28862 -18.02158 -16.85263 -16.62660 -16.37449 -15.82308 -15.05746 -14.81502 -14.27428 -14.04002 -13.71417 -13.51263 -13.09489 -12.67045 -12.36218 -12.17326 -11.84681 -11.65576 -11.35224 -11.19390 -10.66213 -10.49297 -10.42548 -10.37969 -10.22745 -9.31690 -9.18891 -8.52121 -8.10778 -6.92107 -6.55680 -4.05139 2.31621 2.84398 3.07328 3.20881 3.25355 3.34097 3.47205 3.67825 3.85994 4.06480 4.29218 4.61116 4.82963 5.04923 5.10116 5.21552 5.41960 5.42698 5.57109 5.87531 5.98004 6.13844 6.42341 6.77825 7.29739 7.43192 7.80540 7.84392 8.01046 8.22397 8.25145 8.62518 8.93970 9.11526 9.64050 10.50268 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.032562 B = 0.006054 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.679854 B = 4624.006103 C = 5222.120366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.242 3.758 3 C 0.217 3.783 4 N -0.442 5.442 5 C -0.311 4.311 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.878 5.878 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.443 3.557 14 O -0.542 6.542 15 C 0.124 3.876 16 N -0.346 5.346 17 C -0.033 4.033 18 C 0.052 3.948 19 N -0.880 5.880 20 C -0.009 4.009 21 N -0.235 5.235 22 H 0.131 0.869 23 H 0.084 0.916 24 H 0.274 0.726 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.164 0.836 28 H 0.392 0.608 29 H 0.394 0.606 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 4.980 -10.437 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.076 4.076 3 C 0.090 3.910 4 N -0.164 5.164 5 C -0.438 4.438 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.517 5.517 9 Si 0.756 3.244 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.229 3.771 14 O -0.421 6.421 15 C -0.001 4.001 16 N -0.134 5.134 17 C -0.180 4.180 18 C -0.057 4.057 19 N -0.427 5.427 20 C -0.197 4.197 21 N -0.058 5.058 22 H 0.149 0.851 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.182 0.818 28 H 0.219 0.781 29 H 0.221 0.779 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.143 4.653 -9.242 10.410 hybrid contribution -0.296 -0.548 0.028 0.623 sum 0.847 4.105 -9.214 10.123 Atomic orbital electron populations 1.80917 1.13543 1.09030 1.11407 1.29346 0.95385 0.92067 0.90834 1.18804 0.81605 0.86258 1.04371 1.43624 1.56970 1.11605 1.04190 1.19738 1.29816 1.07466 0.86742 0.87296 1.25280 0.94955 0.97748 0.99155 1.69847 1.19825 1.40011 1.22041 0.85862 0.78986 0.79724 0.79850 1.20051 1.21101 1.19309 1.20047 0.85187 0.88735 0.83119 1.90632 1.48344 1.22679 1.80468 1.21511 1.03122 0.96176 0.79340 1.47612 1.07512 1.47417 1.10837 1.21610 0.96526 1.10334 0.89513 1.17627 0.93080 1.05895 0.89080 1.41402 1.14284 1.73680 1.13334 1.23490 0.95682 1.05917 0.94650 1.77346 1.05184 1.13109 1.10129 0.85095 0.89792 0.91551 0.87478 0.88061 0.81838 0.78150 0.77902 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.60 18.54 42.15 0.78 -9.82 16 2 C 0.24 5.04 12.95 -20.76 -0.27 4.77 16 3 C 0.22 4.04 4.91 -6.83 -0.03 4.01 16 4 N -0.44 -10.02 2.60 -117.93 -0.31 -10.33 16 5 C -0.31 -7.90 9.32 -14.93 -0.14 -8.04 16 6 H 0.11 2.98 7.39 -52.49 -0.39 2.59 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.70 16 8 N -0.88 -21.64 9.48 55.50 0.53 -21.11 16 9 Si 0.93 19.48 29.60 -169.99 -5.03 14.45 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.44 10.02 7.60 -10.99 -0.08 9.94 16 14 O -0.54 -14.66 15.37 5.55 0.09 -14.57 16 15 C 0.12 2.15 5.60 -5.20 -0.03 2.13 16 16 N -0.35 -6.34 3.43 -62.18 -0.21 -6.55 16 17 C -0.03 -0.52 11.52 -16.63 -0.19 -0.71 16 18 C 0.05 0.76 7.26 -83.90 -0.61 0.15 16 19 N -0.88 -9.31 9.20 32.29 0.30 -9.01 16 20 C -0.01 -0.14 12.03 -17.22 -0.21 -0.35 16 21 N -0.24 -4.60 11.65 30.70 0.36 -4.24 16 22 H 0.13 2.51 6.46 -51.93 -0.34 2.18 16 23 H 0.08 1.12 6.68 -51.93 -0.35 0.78 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.11 1.66 7.44 -51.93 -0.39 1.27 16 26 H 0.10 1.43 7.42 -51.93 -0.39 1.04 16 27 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.39 3.43 8.96 -40.82 -0.37 3.07 16 29 H 0.39 3.35 8.96 -40.82 -0.37 2.98 16 30 H 0.18 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -33.52 274.97 -3.56 -37.08 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -2.55 Total: 7.38 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -1.65 Total: 12.59 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 1.44 Total: -61.07 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.52 -3.56 -37.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035320954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.763 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds