Wall clock time and date at job start Mon Mar 30 2020 03:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38835 * 120.34362 * 2 1 4 4 C 1.38357 * 118.49916 * 180.02562 * 3 2 1 5 5 C 1.39090 * 119.09579 * 0.02562 * 4 3 2 6 6 N 1.39224 * 119.69926 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00076 * 174.91560 * 6 5 4 8 8 O 1.21449 * 120.00136 * 5.09017 * 7 6 5 9 9 C 1.48745 * 119.99822 * 185.08456 * 7 6 5 10 10 O 1.21507 * 120.00051 * 359.97438 * 9 7 6 11 11 N 1.34783 * 119.99609 * 180.02562 * 9 7 6 12 12 C 1.36094 * 119.99800 * 179.97438 * 11 9 7 13 13 H 1.08000 * 119.99948 * 0.02562 * 12 11 9 14 14 C 1.39595 * 120.00024 * 180.02562 * 12 11 9 15 15 N 1.31011 * 120.00208 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00202 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47093 * 89.99784 * 16 14 12 18 18 H 1.48499 * 109.47514 * 210.00184 * 16 14 12 19 19 H 1.48503 * 109.47172 * 330.00415 * 16 14 12 20 20 N 1.32376 * 120.59886 * 359.97438 * 5 4 3 21 21 C 1.31925 * 121.63786 * 359.97438 * 20 5 4 22 22 H 1.09008 * 109.47003 * 89.99556 * 1 2 3 23 23 H 1.08996 * 109.47595 * 209.99976 * 1 2 3 24 24 H 1.08998 * 109.47112 * 329.99888 * 1 2 3 25 25 H 1.08004 * 120.75539 * 359.97438 * 3 2 1 26 26 H 1.07998 * 120.45215 * 179.72906 * 4 3 2 27 27 H 0.97008 * 119.99786 * 354.90895 * 6 5 4 28 28 H 0.97001 * 119.99763 * 0.02562 * 11 9 7 29 29 H 0.97002 * 120.00187 * 180.02562 * 15 14 12 30 30 H 1.07999 * 119.57638 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1982 0.0000 4 6 3.5912 1.1536 -0.0005 5 6 4.2281 -0.0829 -0.0016 6 7 5.6191 -0.1424 -0.0016 7 6 6.2427 -1.3327 0.1008 8 8 5.5946 -2.3599 0.0999 9 6 7.7247 -1.3885 0.2147 10 8 8.3732 -0.3609 0.2150 11 7 8.3484 -2.5790 0.3166 12 6 9.7044 -2.6302 0.4203 13 1 10.2807 -1.7168 0.4214 14 6 10.3504 -3.8632 0.5253 15 7 11.6557 -3.9124 0.6257 16 14 9.3537 -5.4430 0.5227 17 1 9.1944 -5.9255 -0.8726 18 1 10.0586 -6.4744 1.3257 19 1 8.0157 -5.1852 1.1130 20 7 3.5237 -1.2037 -0.0016 21 6 2.2045 -1.1919 -0.0001 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6864 2.1437 -0.0004 26 1 4.1683 2.0665 -0.0050 27 1 6.1394 0.6730 -0.0755 28 1 7.8307 -3.3994 0.3153 29 1 12.1046 -4.7692 0.6982 30 1 1.6631 -2.1263 0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:02 Heat of formation + Delta-G solvation = -19.439720 kcal Electronic energy + Delta-G solvation = -17121.674616 eV Core-core repulsion = 14110.748199 eV Total energy + Delta-G solvation = -3010.926417 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72693 -39.28676 -37.39988 -35.19784 -34.18249 -32.88276 -31.97942 -31.37077 -27.22110 -25.84300 -24.14719 -23.00903 -21.53261 -19.60035 -19.10222 -18.04092 -16.76931 -16.06759 -15.48874 -15.27725 -15.25091 -14.78319 -14.26083 -14.16696 -13.55135 -13.26325 -13.09966 -12.90182 -12.61721 -12.51761 -12.47532 -11.87717 -11.31704 -10.80704 -10.63443 -10.46399 -10.16889 -9.82975 -9.82019 -9.30475 -8.47944 -8.37641 -8.07400 -6.64738 -4.05529 1.03977 1.30224 2.29877 2.93587 3.03165 3.06669 3.09371 3.80061 3.91727 4.17468 4.30489 4.65136 4.75884 4.87677 4.94011 5.07070 5.11519 5.36198 5.41249 5.59354 5.71650 5.73818 5.88103 6.18384 6.37427 6.81650 7.18559 7.29483 7.81508 8.01919 8.27594 8.46435 8.67610 9.12332 9.54049 10.44742 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.045296 B = 0.004816 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.006368 B = 5812.107947 C = 6410.839781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.184 4.184 3 C -0.049 4.049 4 C -0.206 4.206 5 C 0.364 3.636 6 N -0.643 5.643 7 C 0.504 3.496 8 O -0.480 6.480 9 C 0.402 3.598 10 O -0.580 6.580 11 N -0.521 5.521 12 C -0.307 4.307 13 H 0.129 0.871 14 C 0.054 3.946 15 N -0.844 5.844 16 Si 0.876 3.124 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.259 1.259 20 N -0.475 5.475 21 C 0.133 3.867 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.428 0.572 28 H 0.385 0.615 29 H 0.283 0.717 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.962 6.459 -1.172 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.188 4.188 3 C -0.075 4.075 4 C -0.230 4.230 5 C 0.133 3.867 6 N -0.290 5.290 7 C 0.288 3.712 8 O -0.350 6.350 9 C 0.187 3.813 10 O -0.467 6.467 11 N -0.157 5.157 12 C -0.437 4.437 13 H 0.147 0.853 14 C -0.155 4.155 15 N -0.481 5.481 16 Si 0.700 3.300 17 H -0.188 1.188 18 H -0.194 1.194 19 H -0.183 1.183 20 N -0.190 5.190 21 C -0.025 4.025 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.155 0.845 27 H 0.266 0.734 28 H 0.220 0.780 29 H 0.094 0.906 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.207 5.396 -1.131 19.023 hybrid contribution -0.697 -0.026 -0.009 0.697 sum -18.903 5.370 -1.139 19.684 Atomic orbital electron populations 1.20605 0.90411 1.02704 1.02138 1.20805 0.97452 0.94227 1.06283 1.21190 0.92968 0.98112 0.95209 1.21493 0.95534 0.97125 1.08838 1.18573 0.84792 0.89747 0.93591 1.43343 1.03178 1.11732 1.70759 1.20913 0.90155 0.83138 0.77019 1.90786 1.67448 1.32694 1.44027 1.18631 0.86146 0.85257 0.91314 1.90629 1.65832 1.32682 1.57521 1.41812 1.08095 1.06836 1.58991 1.19589 0.79677 0.97016 1.47408 0.85342 1.25254 0.95735 0.98548 0.95997 1.69437 1.07724 1.27619 1.43337 0.86667 0.80668 0.82758 0.79874 1.18763 1.19409 1.18325 1.67728 1.07857 1.28588 1.14781 1.22588 0.88773 0.97508 0.93669 0.91414 0.91484 0.91735 0.84735 0.84482 0.73355 0.78048 0.90630 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.03 36.01 0.36 -0.35 16 2 C -0.18 -1.95 5.90 -104.45 -0.62 -2.56 16 3 C -0.05 -0.50 9.85 -39.32 -0.39 -0.88 16 4 C -0.21 -2.48 9.94 -39.22 -0.39 -2.87 16 5 C 0.36 5.89 7.42 -154.84 -1.15 4.74 16 6 N -0.64 -11.28 5.37 -12.04 -0.06 -11.35 16 7 C 0.50 10.81 7.82 -11.92 -0.09 10.71 16 8 O -0.48 -11.08 14.73 5.41 0.08 -11.00 16 9 C 0.40 9.77 7.81 -11.91 -0.09 9.68 16 10 O -0.58 -15.17 16.04 5.36 0.09 -15.09 16 11 N -0.52 -13.16 5.06 -11.62 -0.06 -13.22 16 12 C -0.31 -8.53 10.16 -15.15 -0.15 -8.69 16 13 H 0.13 3.95 7.36 -52.49 -0.39 3.57 16 14 C 0.05 1.42 5.51 -17.40 -0.10 1.33 16 15 N -0.84 -23.27 13.94 55.53 0.77 -22.50 16 16 Si 0.88 19.28 27.74 -169.99 -4.72 14.57 16 17 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.26 -5.56 6.53 56.52 0.37 -5.19 16 20 N -0.48 -8.30 7.88 -12.39 -0.10 -8.40 16 21 C 0.13 1.77 10.85 -17.56 -0.19 1.58 16 22 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 23 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.43 6.54 8.16 -40.82 -0.33 6.21 16 28 H 0.38 9.16 5.22 -40.82 -0.21 8.95 16 29 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 30 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 274.34 15.07 4.13 4.13 Total: -1.00 -32.58 274.34 -5.30 -37.88 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -2.63 Total: 12.27 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -2.81 Total: 12.69 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.55 Total: -55.46 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.17 Total: -26.08 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.72 Total: 14.57 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.58 -5.30 -37.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.441 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds