Wall clock time and date at job start Mon Mar 30 2020 03:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 120.00121 * 2 1 4 4 O 1.21448 * 119.99822 * 188.93626 * 3 2 1 5 5 C 1.48743 * 119.99810 * 8.93674 * 3 2 1 6 6 O 1.21506 * 120.00072 * 359.01168 * 5 3 2 7 7 N 1.34778 * 119.99612 * 179.01063 * 5 3 2 8 8 C 1.36097 * 119.99604 * 179.97438 * 7 5 3 9 9 H 1.07998 * 120.00396 * 0.02562 * 8 7 5 10 10 C 1.39599 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31005 * 119.99884 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00276 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47148 * 90.00263 * 12 10 8 14 14 H 1.48495 * 109.47554 * 210.00540 * 12 10 8 15 15 H 1.48499 * 109.47182 * 330.00795 * 12 10 8 16 16 C 1.39230 * 119.99893 * 180.02562 * 2 1 3 17 17 C 1.39081 * 119.69809 * 195.24422 * 16 2 1 18 18 C 1.38359 * 119.09874 * 180.02562 * 17 16 2 19 19 C 1.38836 * 118.49353 * 359.97438 * 18 17 16 20 20 C 1.38091 * 119.32325 * 0.28095 * 19 18 17 21 21 N 1.31924 * 120.84961 * 359.42398 * 20 19 18 22 22 H 1.09007 * 109.46964 * 276.93191 * 1 2 3 23 23 H 1.09005 * 109.47306 * 36.92570 * 1 2 3 24 24 H 1.08998 * 109.47562 * 156.93379 * 1 2 3 25 25 H 0.96994 * 120.00181 * 0.02562 * 7 5 3 26 26 H 0.97012 * 119.99838 * 179.97438 * 11 10 8 27 27 H 1.08005 * 120.45468 * 0.03203 * 17 16 2 28 28 H 1.07991 * 120.74995 * 180.02562 * 18 17 16 29 29 H 1.07998 * 120.34166 * 180.02562 * 19 18 17 30 30 H 1.08000 * 119.58026 * 179.69758 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3424 1.1735 -0.1634 5 6 1.4087 2.4475 0.2001 6 8 0.2024 2.4426 0.3456 7 7 2.0853 3.6130 0.2200 8 6 1.4171 4.7846 0.4026 9 1 0.3449 4.7803 0.5319 10 6 2.1178 5.9918 0.4238 11 7 3.4185 5.9970 0.2674 12 14 1.2009 7.5997 0.6751 13 1 1.1250 7.9046 2.1265 14 1 1.9207 8.6945 -0.0237 15 1 -0.1720 7.4783 0.1224 16 6 2.1611 -1.2058 -0.0005 17 6 3.5151 -1.2199 0.3171 18 6 4.1949 -2.4250 0.3122 19 6 3.4944 -3.5792 -0.0109 20 6 2.1517 -3.4909 -0.3213 21 7 1.5282 -2.3285 -0.3030 22 1 -0.3633 0.1240 1.0202 23 1 -0.3634 0.8216 -0.6174 24 1 -0.3634 -0.9455 -0.4026 25 1 3.0482 3.6170 0.1035 26 1 3.9054 6.8359 0.2817 27 1 4.0290 -0.3026 0.5643 28 1 5.2463 -2.4668 0.5551 29 1 3.9953 -4.5359 -0.0234 30 1 1.6039 -4.3856 -0.5780 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:03 Heat of formation + Delta-G solvation = -6.664786 kcal Electronic energy + Delta-G solvation = -17563.435292 eV Core-core repulsion = 14553.062838 eV Total energy + Delta-G solvation = -3010.372454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84605 -39.19152 -37.37656 -35.66877 -34.16145 -32.24519 -31.54954 -30.38262 -26.71351 -26.04492 -24.21831 -23.23126 -21.70786 -19.41123 -18.36697 -17.28500 -16.79276 -16.38170 -15.96270 -15.50985 -15.00943 -14.51925 -14.15133 -13.97753 -13.74424 -13.17890 -12.94039 -12.81497 -12.51526 -11.97822 -11.92496 -11.70990 -11.27660 -10.61109 -10.49685 -10.26648 -10.13708 -9.80388 -9.64679 -9.37672 -8.37125 -8.22829 -7.90054 -6.80649 -4.10734 1.16677 1.41221 2.26650 2.81021 3.07386 3.11450 3.17662 3.90133 3.93628 4.17268 4.55811 4.65129 4.95869 5.04996 5.18208 5.23040 5.38097 5.77392 5.82147 6.01050 6.05775 6.10545 6.40244 6.45328 6.53773 7.10540 7.16441 7.19629 7.62473 8.06782 8.15157 8.36592 8.81222 9.15587 9.70124 10.33476 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.050911 B = 0.005048 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.845503 B = 5545.746822 C = 6052.609119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.529 5.529 3 C 0.515 3.485 4 O -0.521 6.521 5 C 0.391 3.609 6 O -0.586 6.586 7 N -0.490 5.490 8 C -0.302 4.302 9 H 0.116 0.884 10 C 0.032 3.968 11 N -0.862 5.862 12 Si 0.942 3.058 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.263 1.263 16 C 0.363 3.637 17 C -0.195 4.195 18 C -0.056 4.056 19 C -0.212 4.212 20 C 0.124 3.876 21 N -0.518 5.518 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.075 0.925 25 H 0.405 0.595 26 H 0.283 0.717 27 H 0.170 0.830 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 -12.239 -0.021 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.254 5.254 3 C 0.304 3.696 4 O -0.397 6.397 5 C 0.176 3.824 6 O -0.475 6.475 7 N -0.124 5.124 8 C -0.432 4.432 9 H 0.134 0.866 10 C -0.176 4.176 11 N -0.499 5.499 12 Si 0.767 3.233 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.187 1.187 16 C 0.134 3.866 17 C -0.217 4.217 18 C -0.083 4.083 19 C -0.234 4.234 20 C -0.034 4.034 21 N -0.233 5.233 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.240 0.760 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.437 -11.926 -0.226 11.936 hybrid contribution 1.113 0.558 0.237 1.267 sum 0.676 -11.368 0.011 11.388 Atomic orbital electron populations 1.22174 0.75771 1.03745 1.03842 1.45158 1.09381 1.02588 1.68271 1.21067 0.87124 0.85318 0.76127 1.90552 1.14927 1.86908 1.47285 1.18462 0.87879 0.83651 0.92426 1.90579 1.13092 1.85511 1.58291 1.41564 1.11188 1.04476 1.55151 1.19955 0.94958 0.82154 1.46175 0.86626 1.25648 0.95627 1.00622 0.95670 1.69478 1.06965 1.29710 1.43794 0.85675 0.79548 0.79234 0.78885 1.19754 1.20403 1.18733 1.18507 0.89084 0.85886 0.93138 1.22736 0.94371 1.01451 1.03155 1.21510 1.00130 0.91743 0.94871 1.21960 0.96105 0.99386 1.05933 1.22383 0.91999 0.94153 0.94883 1.67032 1.40354 0.98179 1.17737 0.91846 0.88140 0.90647 0.75958 0.90653 0.81290 0.84806 0.85153 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 9.08 59.85 0.54 2.08 16 2 N -0.53 -10.41 3.08 -123.52 -0.38 -10.79 16 3 C 0.52 11.33 7.53 -11.92 -0.09 11.24 16 4 O -0.52 -11.70 13.24 5.41 0.07 -11.63 16 5 C 0.39 9.55 7.68 -11.92 -0.09 9.45 16 6 O -0.59 -14.89 12.89 5.36 0.07 -14.82 16 7 N -0.49 -12.56 5.24 -11.62 -0.06 -12.63 16 8 C -0.30 -7.95 9.67 -15.15 -0.15 -8.10 16 9 H 0.12 3.10 7.15 -52.49 -0.38 2.72 16 10 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 11 N -0.86 -22.15 13.03 55.53 0.72 -21.43 16 12 Si 0.94 19.27 29.56 -169.99 -5.02 14.25 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 16 C 0.36 6.59 7.23 -154.83 -1.12 5.47 16 17 C -0.19 -3.29 8.84 -39.22 -0.35 -3.64 16 18 C -0.06 -0.74 10.17 -39.32 -0.40 -1.14 16 19 C -0.21 -2.43 10.11 -39.41 -0.40 -2.83 16 20 C 0.12 1.56 11.18 -17.57 -0.20 1.36 16 21 N -0.52 -8.40 9.02 -12.39 -0.11 -8.51 16 22 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 23 H 0.10 1.92 6.13 -51.93 -0.32 1.60 16 24 H 0.07 1.20 7.06 -51.93 -0.37 0.83 16 25 H 0.40 10.40 7.35 -40.82 -0.30 10.10 16 26 H 0.28 6.73 8.30 -40.81 -0.34 6.39 16 27 H 0.17 3.13 5.22 -52.66 -0.28 2.85 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -28.91 267.78 -5.47 -34.39 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -2.46 Total: 12.53 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -2.34 Total: 14.61 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.17 Total: -53.36 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: 0.14 Total: -26.45 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.91 -5.47 -34.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.721 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds