Wall clock time and date at job start Mon Mar 30 2020 04:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48494 * 109.47056 * 240.00121 * 3 2 1 5 5 H 1.48504 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46742 * 119.99754 * 3 2 1 7 7 C 1.37879 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46892 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47332 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00158 * 179.97438 * 11 10 9 13 13 O 1.20828 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99748 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47009 * 180.02562 * 14 12 11 16 16 C 1.38133 * 120.03523 * 265.00221 * 15 14 12 17 17 C 1.38265 * 120.07407 * 180.29677 * 16 15 14 18 18 C 1.38306 * 120.14784 * 359.44555 * 17 16 15 19 19 C 1.38089 * 120.07673 * 0.55309 * 18 17 16 20 20 C 1.38886 * 120.04213 * 85.01862 * 15 14 12 21 21 N 1.39676 * 120.07159 * 359.96227 * 20 15 14 22 22 H 0.96994 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47288 * 59.99957 * 9 7 2 24 24 H 1.09000 * 109.46567 * 299.99626 * 9 7 2 25 25 H 1.09008 * 109.47616 * 59.99508 * 10 9 7 26 26 H 1.09000 * 109.47537 * 300.00030 * 10 9 7 27 27 H 1.08997 * 109.47250 * 60.00036 * 14 12 11 28 28 H 1.09000 * 109.47074 * 300.00102 * 14 12 11 29 29 H 1.08002 * 119.95961 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.92315 * 179.69829 * 17 16 15 31 31 H 1.08003 * 119.96002 * 180.27453 * 18 17 16 32 32 H 1.07998 * 120.03790 * 179.70139 * 19 18 17 33 33 H 0.96994 * 120.00263 * 359.97438 * 21 20 15 34 34 H 0.97003 * 119.99650 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9196 0.0011 12 6 2.2506 -6.0452 0.0007 13 8 3.4572 -5.9820 0.0003 14 6 1.5664 -7.3880 0.0019 15 6 2.6044 -8.4806 0.0017 16 6 3.0042 -9.0542 -1.1896 17 6 3.9519 -10.0610 -1.1901 18 6 4.5111 -10.4892 0.0001 19 6 4.1160 -9.9200 1.1946 20 6 3.1598 -8.9122 1.1993 21 7 2.7581 -8.3340 2.4056 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8722 -3.6043 0.8905 26 1 2.8721 -3.6043 -0.8894 27 1 0.9427 -7.4788 -0.8874 28 1 0.9446 -7.4782 0.8926 29 1 2.5728 -8.7190 -2.1212 30 1 4.2592 -10.5111 -2.1225 31 1 5.2544 -11.2727 -0.0042 32 1 4.5496 -10.2582 2.1242 33 1 2.0909 -7.6300 2.4076 34 1 3.1470 -8.6360 3.2414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041047921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:06 Heat of formation + Delta-G solvation = -77.132685 kcal Electronic energy + Delta-G solvation = -17210.482541 eV Core-core repulsion = 14300.594713 eV Total energy + Delta-G solvation = -2909.887828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28722 -39.10716 -36.05253 -34.60613 -33.35858 -32.73391 -30.32751 -29.05356 -27.58712 -24.94739 -22.58052 -22.00771 -20.90859 -20.16014 -17.37465 -17.28553 -17.08541 -16.15407 -15.96779 -15.82065 -15.23646 -14.50594 -14.20383 -13.92392 -13.44470 -13.25574 -13.12665 -12.46147 -12.35400 -12.20275 -11.35974 -11.18208 -11.08030 -11.05442 -10.73631 -10.70213 -10.69424 -10.18256 -9.63254 -9.62252 -9.32111 -8.82131 -8.44717 -7.56681 -6.11005 -4.15481 1.33428 1.62254 2.62310 3.22883 3.29643 3.33642 3.38173 3.76376 3.96862 4.39364 4.62179 4.78045 5.02572 5.14998 5.25393 5.34042 5.39690 5.45562 5.56155 5.82575 5.97902 6.09440 6.12132 6.24263 6.47156 6.60201 6.64188 6.84728 7.03530 7.40028 7.55651 7.61748 7.64178 7.86606 8.20591 8.30327 8.89913 9.48915 11.00454 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048418 B = 0.003691 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.160976 B = 7584.556960 C = 7606.397300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.360 6.360 12 C 0.449 3.551 13 O -0.506 6.506 14 C -0.068 4.068 15 C -0.151 4.151 16 C -0.056 4.056 17 C -0.181 4.181 18 C -0.071 4.071 19 C -0.201 4.201 20 C 0.236 3.764 21 N -0.875 5.875 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.397 0.603 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -20.190 1.680 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.277 6.277 12 C 0.291 3.709 13 O -0.394 6.394 14 C -0.106 4.106 15 C -0.156 4.156 16 C -0.075 4.075 17 C -0.201 4.201 18 C -0.089 4.089 19 C -0.224 4.224 20 C 0.131 3.869 21 N -0.414 5.414 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.226 0.774 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.020 -20.001 1.657 20.468 hybrid contribution 0.512 1.221 0.345 1.368 sum 4.532 -18.780 2.002 19.423 Atomic orbital electron populations 1.69964 1.06087 1.27106 1.49730 1.24983 0.94920 0.99373 0.94845 0.86530 0.79487 0.82466 0.78802 1.20041 1.21102 1.20075 1.20953 0.93147 0.90176 1.52290 0.92337 1.19159 0.94175 0.89056 0.98823 1.23610 0.96323 0.78906 1.00838 1.86523 1.42499 1.15825 1.82823 1.23555 0.86803 0.87117 0.73446 1.90651 1.15682 1.88172 1.44870 1.20104 0.97186 0.87309 1.06013 1.18775 1.03170 1.01057 0.92620 1.20790 0.95603 0.94621 0.96488 1.20826 1.00702 1.00675 0.97943 1.20854 0.97828 0.98171 0.92093 1.20509 1.02196 1.00923 0.98735 1.17547 0.92051 0.91361 0.85980 1.42557 1.48810 1.44304 1.05732 0.92647 0.95362 0.95407 0.92493 0.92403 0.86913 0.87943 0.86111 0.86422 0.86341 0.86368 0.77370 0.77414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.66 5.35 -27.89 -0.15 0.51 16 10 C 0.08 1.71 5.40 37.15 0.20 1.91 16 11 O -0.36 -7.18 10.22 -39.25 -0.40 -7.58 16 12 C 0.45 7.82 7.95 36.01 0.29 8.11 16 13 O -0.51 -10.28 15.78 -18.75 -0.30 -10.58 16 14 C -0.07 -0.86 5.38 -29.03 -0.16 -1.01 16 15 C -0.15 -1.95 4.39 -104.42 -0.46 -2.41 16 16 C -0.06 -0.68 9.68 -39.61 -0.38 -1.06 16 17 C -0.18 -2.00 10.04 -39.55 -0.40 -2.40 16 18 C -0.07 -0.75 10.04 -39.61 -0.40 -1.15 16 19 C -0.20 -2.24 9.90 -39.38 -0.39 -2.63 16 20 C 0.24 2.89 6.73 -83.79 -0.56 2.33 16 21 N -0.88 -8.94 8.99 32.41 0.29 -8.65 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.28 8.13 -51.92 -0.42 0.85 16 26 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 27 H 0.11 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.10 1.06 6.82 -51.93 -0.35 0.71 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.40 4.02 6.94 -40.82 -0.28 3.74 16 34 H 0.40 3.14 8.84 -40.82 -0.36 2.78 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -32.75 300.06 -7.33 -40.08 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.34 Total: 2.87 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.82 Total: -11.43 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 1.03 Total: -34.34 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.70 Total: -18.16 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.75 -7.33 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.055 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds