Wall clock time and date at job start Mon Mar 30 2020 03:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47298 * 321.90739 * 3 2 1 5 5 C 1.37098 * 120.00012 * 263.94987 * 4 3 2 6 6 H 1.08006 * 120.00144 * 200.21561 * 5 4 3 7 7 C 1.38952 * 119.99742 * 20.22012 * 5 4 3 8 8 N 1.31406 * 120.00055 * 21.42297 * 7 5 4 9 9 Si 1.86798 * 119.99724 * 201.41847 * 7 5 4 10 10 H 1.48502 * 109.47135 * 60.00206 * 9 7 5 11 11 H 1.48506 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47631 * 300.00227 * 9 7 5 13 13 C 1.34776 * 119.99913 * 83.95639 * 4 3 2 14 14 O 1.21294 * 119.99776 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99995 * 359.97438 * 13 4 3 16 16 N 1.46502 * 109.47109 * 180.02562 * 15 13 4 17 17 C 1.34957 * 125.97328 * 124.99775 * 16 15 13 18 18 C 1.35255 * 107.86276 * 179.69905 * 17 16 15 19 19 C 1.40423 * 107.85873 * 0.26759 * 18 17 16 20 20 N 1.39990 * 125.97330 * 179.97438 * 19 18 17 21 21 N 1.31223 * 108.05348 * 359.97438 * 19 18 17 22 22 H 1.09003 * 109.47042 * 201.90801 * 3 2 1 23 23 H 1.09000 * 109.47123 * 81.90963 * 3 2 1 24 24 H 0.96998 * 120.00131 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.47224 * 60.00593 * 15 13 4 26 26 H 1.09003 * 109.46847 * 300.00003 * 15 13 4 27 27 H 1.07997 * 126.06714 * 359.96736 * 17 16 15 28 28 H 1.07998 * 126.06798 * 180.28235 * 18 17 16 29 29 H 0.97005 * 119.99784 * 359.97438 * 20 19 18 30 30 H 0.97005 * 120.00168 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -1.0861 0.8521 5 6 3.4432 -0.8334 2.1543 6 1 4.0928 -1.5157 2.6825 7 6 2.9584 0.3006 2.7945 8 7 1.8755 0.8954 2.3471 9 14 3.8461 0.9793 4.2915 10 1 5.2365 1.3443 3.9191 11 1 3.1328 2.1844 4.7857 12 1 3.8743 -0.0516 5.3600 13 6 3.2061 -2.3344 0.3558 14 8 3.6105 -3.2343 1.0615 15 6 2.8250 -2.6123 -1.0755 16 7 3.0320 -4.0326 -1.3690 17 6 2.1059 -4.8844 -1.8570 18 6 2.6890 -6.0971 -1.9942 19 6 4.0222 -5.9846 -1.5678 20 7 4.9694 -7.0152 -1.5492 21 7 4.2250 -4.7444 -1.1900 22 1 2.9708 0.9543 0.3835 23 1 2.9713 -0.1438 -1.0174 24 1 1.5369 1.6868 2.7942 25 1 3.4442 -2.0097 -1.7399 26 1 1.7757 -2.3594 -1.2276 27 1 1.0823 -4.6400 -2.0995 28 1 2.2137 -6.9928 -2.3658 29 1 4.7244 -7.9045 -1.8495 30 1 5.8707 -6.8401 -1.2361 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050465914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:44 Heat of formation + Delta-G solvation = 98.998153 kcal Electronic energy + Delta-G solvation = -17663.039326 eV Core-core repulsion = 14689.541512 eV Total energy + Delta-G solvation = -2973.497814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68277 -38.75508 -35.86764 -34.60509 -34.23229 -32.08745 -31.13003 -29.48996 -27.60046 -26.63797 -24.34171 -21.00613 -20.46926 -19.23155 -17.99666 -16.88622 -16.54377 -16.38768 -15.96649 -15.03016 -14.94753 -14.35175 -13.92070 -13.80944 -13.09911 -13.02563 -12.70292 -12.56859 -12.23386 -11.83642 -11.65831 -11.33727 -11.15560 -10.67743 -10.59008 -10.45642 -10.37447 -9.98857 -9.29232 -8.70577 -8.33695 -8.08008 -7.46575 -6.54810 -4.05497 2.37084 2.80715 3.09982 3.20298 3.23039 3.46373 3.48402 3.68308 3.86380 4.05822 4.20218 4.63792 4.83825 5.02913 5.07604 5.20298 5.42136 5.55179 5.78379 5.97613 5.99560 6.18806 6.38563 6.68230 7.38230 7.43762 7.68575 7.82975 7.86057 8.23565 8.54910 8.63597 8.94964 9.12305 9.65782 10.51438 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.029842 B = 0.006348 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.045867 B = 4409.637905 C = 5150.062684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.241 3.759 3 C 0.218 3.782 4 N -0.442 5.442 5 C -0.313 4.313 6 H 0.107 0.893 7 C 0.034 3.966 8 N -0.877 5.877 9 Si 0.928 3.072 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.444 3.556 14 O -0.539 6.539 15 C 0.121 3.879 16 N -0.348 5.348 17 C 0.074 3.926 18 C -0.315 4.315 19 C 0.318 3.682 20 N -0.852 5.852 21 N -0.313 5.313 22 H 0.128 0.872 23 H 0.085 0.915 24 H 0.274 0.726 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.404 0.596 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -5.306 -9.808 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.165 5.165 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.170 4.170 8 N -0.516 5.516 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.231 3.769 14 O -0.418 6.418 15 C -0.005 4.005 16 N -0.129 5.129 17 C -0.073 4.073 18 C -0.348 4.348 19 C 0.057 3.943 20 N -0.404 5.404 21 N -0.144 5.144 22 H 0.145 0.855 23 H 0.103 0.897 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.186 0.814 28 H 0.157 0.843 29 H 0.233 0.767 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.217 -4.534 -8.882 10.216 hybrid contribution 0.114 -0.261 0.599 0.664 sum 2.332 -4.795 -8.283 9.851 Atomic orbital electron populations 1.80911 1.13522 1.08923 1.11417 1.29321 0.95374 0.92478 0.90548 1.18744 0.81664 0.96075 0.94457 1.43593 1.57175 1.04389 1.11311 1.19643 1.27886 1.08765 0.87656 0.87507 1.25287 0.94778 0.97719 0.99258 1.69817 1.17988 1.21325 1.42420 0.85950 0.79408 0.78283 0.80880 1.19624 1.20989 1.19810 1.20057 0.85063 0.83272 0.88531 1.90640 1.48111 1.43196 1.59820 1.21565 1.03050 0.77855 0.98043 1.47561 1.07499 1.08001 1.49836 1.22342 0.95886 0.90122 0.98998 1.20893 0.94399 0.98933 1.20538 1.19267 0.89664 0.89263 0.96082 1.41178 1.12320 1.08994 1.77898 1.77568 1.04592 1.03396 1.28863 0.85465 0.89736 0.91515 0.88057 0.87395 0.81394 0.84255 0.76730 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.52 18.54 42.15 0.78 -9.74 16 2 C 0.24 4.99 12.82 -20.76 -0.27 4.73 16 3 C 0.22 4.04 4.91 -6.83 -0.03 4.01 16 4 N -0.44 -10.05 2.60 -117.93 -0.31 -10.36 16 5 C -0.31 -7.97 9.27 -14.93 -0.14 -8.11 16 6 H 0.11 2.92 7.43 -52.48 -0.39 2.53 16 7 C 0.03 0.82 4.84 -17.47 -0.08 0.73 16 8 N -0.88 -21.73 9.58 55.50 0.53 -21.20 16 9 Si 0.93 19.53 29.60 -169.99 -5.03 14.50 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.44 10.10 7.59 -10.99 -0.08 10.01 16 14 O -0.54 -14.69 15.37 5.55 0.09 -14.61 16 15 C 0.12 2.08 5.59 -5.19 -0.03 2.06 16 16 N -0.35 -6.40 3.40 -62.56 -0.21 -6.61 16 17 C 0.07 1.14 11.43 -17.24 -0.20 0.95 16 18 C -0.31 -4.73 10.83 -39.82 -0.43 -5.16 16 19 C 0.32 5.37 8.46 -154.55 -1.31 4.06 16 20 N -0.85 -10.68 9.15 31.39 0.29 -10.39 16 21 N -0.31 -6.30 11.65 31.41 0.37 -5.93 16 22 H 0.13 2.42 6.63 -51.93 -0.34 2.07 16 23 H 0.08 1.13 6.69 -51.93 -0.35 0.78 16 24 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 25 H 0.10 1.43 7.42 -51.93 -0.39 1.05 16 26 H 0.11 1.63 7.42 -51.93 -0.39 1.25 16 27 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 28 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.40 3.71 8.96 -40.82 -0.37 3.35 16 30 H 0.40 4.68 8.96 -40.82 -0.37 4.31 16 LS Contribution 274.88 15.07 4.14 4.14 Total: -1.00 -34.29 274.88 -4.49 -38.78 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -2.56 Total: 8.16 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -2.57 Total: 13.27 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 1.45 Total: -64.23 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.61 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.29 -4.49 -38.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050465914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.775 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds